Wall clock time and date at job start Tue Mar 31 2020 07:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47196 * 2 1 4 4 C 1.52998 * 109.47307 * 120.00379 * 2 1 3 5 5 C 1.52998 * 109.47519 * 184.99669 * 4 2 1 6 6 N 1.46499 * 109.47661 * 180.02562 * 5 4 2 7 7 C 1.34775 * 120.00044 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00074 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99888 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47505 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.46636 * 54.99863 * 10 9 7 12 12 C 1.52999 * 109.47169 * 295.00341 * 10 9 7 13 13 C 1.50697 * 109.47363 * 174.99579 * 10 9 7 14 14 C 1.34515 * 125.79159 * 239.99820 * 13 10 9 15 15 C 1.41385 * 106.84000 * 180.02562 * 14 13 10 16 16 C 1.34507 * 106.84104 * 0.02562 * 15 14 13 17 17 O 1.34300 * 108.42410 * 359.97438 * 16 15 14 18 18 N 1.46506 * 109.46997 * 240.00016 * 2 1 3 19 19 C 1.36932 * 119.99919 * 84.99788 * 18 2 1 20 20 H 1.08002 * 120.00084 * 0.02562 * 19 18 2 21 21 C 1.38810 * 120.00080 * 180.02562 * 19 18 2 22 22 N 1.31625 * 119.99916 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99855 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46834 * 90.00287 * 23 21 19 25 25 H 1.48504 * 109.47086 * 209.99881 * 23 21 19 26 26 H 1.48496 * 109.47260 * 330.00082 * 23 21 19 27 27 H 1.08991 * 109.47477 * 59.99444 * 1 2 3 28 28 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46790 * 299.99466 * 1 2 3 30 30 H 1.09003 * 109.47676 * 64.99399 * 4 2 1 31 31 H 1.09002 * 109.47006 * 304.99693 * 4 2 1 32 32 H 1.08997 * 109.47066 * 59.99648 * 5 4 2 33 33 H 1.09002 * 109.47002 * 300.00028 * 5 4 2 34 34 H 0.96999 * 119.99905 * 359.97438 * 6 5 4 35 35 H 1.09003 * 109.47680 * 59.99353 * 9 7 6 36 36 H 1.09002 * 109.47017 * 299.99639 * 9 7 6 37 37 H 1.09007 * 109.46496 * 299.99609 * 12 10 9 38 38 H 1.08996 * 109.47143 * 59.99368 * 12 10 9 39 39 H 1.09003 * 109.47255 * 179.97438 * 12 10 9 40 40 H 1.08001 * 126.57671 * 0.29417 * 14 13 10 41 41 H 1.08003 * 126.57418 * 180.02562 * 15 14 13 42 42 H 1.08001 * 125.78847 * 180.02562 * 16 15 14 43 43 H 0.97001 * 120.00163 * 265.00107 * 18 2 1 44 44 H 0.96998 * 119.99786 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6135 1.3136 6 7 4.0533 -1.3046 2.5094 7 6 5.3741 -1.3401 2.7749 8 8 6.1584 -0.8003 2.0238 9 6 5.8765 -2.0506 4.0053 10 6 7.4013 -1.9429 4.0697 11 1 7.6936 -0.8937 4.0238 12 6 8.0161 -2.6957 2.8881 13 6 7.8935 -2.5454 5.3603 14 6 8.5868 -1.9004 6.3156 15 6 8.8404 -2.8391 7.3421 16 6 8.2874 -4.0016 6.9523 17 8 7.7150 -3.8179 5.7514 18 7 2.0183 -0.6906 -1.1962 19 6 2.1490 -0.0075 -2.3758 20 1 1.8925 1.0405 -2.4242 21 6 2.6112 -0.6620 -3.5093 22 7 2.7373 -0.0052 -4.6430 23 14 3.0541 -2.4748 -3.4258 24 1 1.8562 -3.2922 -3.7453 25 1 4.1293 -2.7674 -4.4075 26 1 3.5289 -2.8058 -2.0583 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.7516 -1.7716 1.2056 31 1 1.6054 -0.2618 2.1369 32 1 3.8532 0.4368 1.3573 33 1 3.9994 -1.0730 0.4258 34 1 3.4260 -1.7361 3.1104 35 1 5.5884 -3.1010 3.9615 36 1 5.4417 -1.5914 4.8931 37 1 7.7238 -3.7448 2.9340 38 1 7.6601 -2.2598 1.9547 39 1 9.1025 -2.6186 2.9337 40 1 8.8879 -0.8633 6.3031 41 1 9.3755 -2.6574 8.2624 42 1 8.3006 -4.9259 7.5109 43 1 2.2490 -1.6318 -1.1527 44 1 3.0606 -0.4624 -5.4350 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001503577648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:40 Heat of formation + Delta-G solvation = -26.348737 kcal Electronic energy + Delta-G solvation = -23121.742099 eV Core-core repulsion = 19654.706182 eV Total energy + Delta-G solvation = -3467.035917 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.83821 -39.81896 -36.90212 -35.36900 -34.40075 -33.17459 -32.26320 -30.13837 -29.24028 -28.58792 -27.41482 -23.93007 -23.21889 -22.30094 -21.96914 -20.72536 -20.15150 -19.69525 -17.77026 -17.53446 -16.83902 -16.23445 -15.97836 -15.59791 -15.17596 -14.77401 -14.42263 -14.01469 -13.78410 -13.41345 -13.29177 -13.07558 -12.97067 -12.89711 -12.56783 -12.45868 -12.18533 -11.94858 -11.62798 -11.50927 -11.22380 -11.15334 -11.04750 -10.77989 -10.65010 -10.41332 -10.17717 -10.02729 -9.67799 -9.56146 -8.95848 -8.88751 -8.71387 -7.25682 -5.74334 -3.09923 1.47836 2.35945 2.67021 2.73521 3.23596 3.39684 3.41940 3.47881 4.34180 4.48894 4.61573 4.69464 4.77433 4.81678 4.95894 5.13902 5.17704 5.22324 5.39790 5.40852 5.48477 5.53732 5.58970 5.62872 5.64527 5.76369 5.87170 5.93481 5.95602 6.06752 6.21548 6.23633 6.24181 6.28040 6.38077 6.48979 6.59423 6.77972 6.89771 6.97294 7.54074 8.01503 8.27614 8.44621 9.22802 9.95365 10.14491 11.44143 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022074 B = 0.002851 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.158631 B = 9818.235637 C =10497.771795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.179 3.821 3 H 0.058 0.942 4 C -0.136 4.136 5 C 0.120 3.880 6 N -0.730 5.730 7 C 0.509 3.491 8 O -0.533 6.533 9 C -0.138 4.138 10 C 0.008 3.992 11 H 0.109 0.891 12 C -0.155 4.155 13 C 0.001 3.999 14 C -0.213 4.213 15 C -0.214 4.214 16 C -0.048 4.048 17 O -0.173 6.173 18 N -0.748 5.748 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.883 3.117 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.397 0.603 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.201 0.799 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.124 -7.071 26.182 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.174 4.174 5 C -0.003 4.003 6 N -0.381 5.381 7 C 0.295 3.705 8 O -0.410 6.410 9 C -0.178 4.178 10 C -0.011 4.011 11 H 0.127 0.873 12 C -0.212 4.212 13 C -0.050 4.050 14 C -0.232 4.232 15 C -0.233 4.233 16 C -0.115 4.115 17 O -0.069 6.069 18 N -0.391 5.391 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.582 5.582 23 Si 0.714 3.286 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.230 0.770 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.217 0.783 43 H 0.193 0.807 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.548 -6.700 25.256 27.198 hybrid contribution 0.114 -1.494 0.522 1.587 sum 7.662 -8.194 25.778 28.113 Atomic orbital electron populations 1.22393 0.98616 1.00843 1.00526 1.20125 0.92056 0.95877 0.84987 0.92412 1.22106 0.94028 1.01666 0.99643 1.21462 0.94318 0.97510 0.87025 1.46145 1.07317 1.57105 1.27580 1.20476 0.82477 0.80520 0.87013 1.90716 1.54967 1.45586 1.49721 1.21760 0.96163 1.02605 0.97298 1.19532 0.93261 1.00333 0.87989 0.87316 1.21997 1.00790 0.99846 0.98603 1.22531 1.02383 0.82082 0.97979 1.21638 1.05271 1.01351 0.94978 1.21833 1.06181 0.93537 1.01720 1.24020 1.00720 1.00771 0.86009 1.84012 1.61527 1.29317 1.32082 1.42823 1.79681 1.09419 1.07219 1.19056 1.36935 0.95580 0.85550 0.89188 1.24662 1.01430 0.97414 0.95603 1.69699 1.52707 1.35527 1.00264 0.86567 0.78023 0.86957 0.77057 1.21241 1.21777 1.20374 0.92221 0.93646 0.94235 0.91776 0.91451 0.91383 0.90258 0.76984 0.88462 0.88636 0.92718 0.89320 0.92397 0.83475 0.83569 0.78254 0.80715 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.18 3.24 2.89 -67.93 -0.20 3.04 16 3 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 4 C -0.14 -1.88 4.87 -26.73 -0.13 -2.01 16 5 C 0.12 1.82 5.56 -4.04 -0.02 1.80 16 6 N -0.73 -8.74 5.56 -60.30 -0.33 -9.07 16 7 C 0.51 6.63 7.55 -10.99 -0.08 6.54 16 8 O -0.53 -9.16 13.97 5.56 0.08 -9.08 16 9 C -0.14 -1.30 5.16 -27.89 -0.14 -1.44 16 10 C 0.01 0.08 2.44 -91.77 -0.22 -0.15 16 11 H 0.11 1.14 7.91 -51.93 -0.41 0.73 16 12 C -0.16 -1.76 8.92 37.16 0.33 -1.43 16 13 C 0.00 0.01 5.83 -35.63 -0.21 -0.20 16 14 C -0.21 -2.01 10.78 -39.70 -0.43 -2.44 16 15 C -0.21 -1.76 10.91 -39.70 -0.43 -2.19 16 16 C -0.05 -0.38 12.09 29.41 0.36 -0.02 16 17 O -0.17 -1.76 10.65 5.71 0.06 -1.70 16 18 N -0.75 -17.13 4.38 -53.43 -0.23 -17.36 16 19 C -0.24 -6.73 10.41 -15.06 -0.16 -6.89 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 22 N -0.93 -29.56 13.97 55.49 0.78 -28.78 16 23 Si 0.88 22.39 27.74 -169.99 -4.71 17.67 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.50 7.75 -51.93 -0.40 1.10 16 34 H 0.40 3.40 8.47 -40.82 -0.35 3.05 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.21 5.95 -51.93 -0.31 0.90 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.20 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.36 8.18 5.66 -40.82 -0.23 7.95 16 44 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -34.14 365.17 -7.16 -41.29 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.21 Total: 9.22 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.08 Total: -7.69 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.21 Total: -55.22 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.14 Total: -10.78 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.14 -7.16 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503577648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.942 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds