Wall clock time and date at job start Tue Mar 31 2020 07:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47196 * 2 1 4 4 C 1.52998 * 109.47307 * 120.00379 * 2 1 3 5 5 C 1.52998 * 109.47519 * 184.99669 * 4 2 1 6 6 N 1.46499 * 109.47661 * 180.02562 * 5 4 2 7 7 C 1.34775 * 120.00044 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00074 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99888 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47505 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.46636 * 54.99863 * 10 9 7 12 12 C 1.52999 * 109.47169 * 295.00341 * 10 9 7 13 13 C 1.50697 * 109.47363 * 174.99579 * 10 9 7 14 14 C 1.34515 * 125.79159 * 239.99820 * 13 10 9 15 15 C 1.41385 * 106.84000 * 180.02562 * 14 13 10 16 16 C 1.34507 * 106.84104 * 0.02562 * 15 14 13 17 17 O 1.34300 * 108.42410 * 359.97438 * 16 15 14 18 18 N 1.46506 * 109.46997 * 240.00016 * 2 1 3 19 19 C 1.36932 * 119.99919 * 84.99788 * 18 2 1 20 20 H 1.08002 * 120.00084 * 0.02562 * 19 18 2 21 21 C 1.38810 * 120.00080 * 180.02562 * 19 18 2 22 22 N 1.31625 * 119.99916 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99855 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46834 * 90.00287 * 23 21 19 25 25 H 1.48504 * 109.47086 * 209.99881 * 23 21 19 26 26 H 1.48496 * 109.47260 * 330.00082 * 23 21 19 27 27 H 1.08991 * 109.47477 * 59.99444 * 1 2 3 28 28 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46790 * 299.99466 * 1 2 3 30 30 H 1.09003 * 109.47676 * 64.99399 * 4 2 1 31 31 H 1.09002 * 109.47006 * 304.99693 * 4 2 1 32 32 H 1.08997 * 109.47066 * 59.99648 * 5 4 2 33 33 H 1.09002 * 109.47002 * 300.00028 * 5 4 2 34 34 H 0.96999 * 119.99905 * 359.97438 * 6 5 4 35 35 H 1.09003 * 109.47680 * 59.99353 * 9 7 6 36 36 H 1.09002 * 109.47017 * 299.99639 * 9 7 6 37 37 H 1.09007 * 109.46496 * 299.99609 * 12 10 9 38 38 H 1.08996 * 109.47143 * 59.99368 * 12 10 9 39 39 H 1.09003 * 109.47255 * 179.97438 * 12 10 9 40 40 H 1.08001 * 126.57671 * 0.29417 * 14 13 10 41 41 H 1.08003 * 126.57418 * 180.02562 * 15 14 13 42 42 H 1.08001 * 125.78847 * 180.02562 * 16 15 14 43 43 H 0.97001 * 120.00163 * 265.00107 * 18 2 1 44 44 H 0.96998 * 119.99786 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6135 1.3136 6 7 4.0533 -1.3046 2.5094 7 6 5.3741 -1.3401 2.7749 8 8 6.1584 -0.8003 2.0238 9 6 5.8765 -2.0506 4.0053 10 6 7.4013 -1.9429 4.0697 11 1 7.6936 -0.8937 4.0238 12 6 8.0161 -2.6957 2.8881 13 6 7.8935 -2.5454 5.3603 14 6 8.5868 -1.9004 6.3156 15 6 8.8404 -2.8391 7.3421 16 6 8.2874 -4.0016 6.9523 17 8 7.7150 -3.8179 5.7514 18 7 2.0183 -0.6906 -1.1962 19 6 2.1490 -0.0075 -2.3758 20 1 1.8925 1.0405 -2.4242 21 6 2.6112 -0.6620 -3.5093 22 7 2.7373 -0.0052 -4.6430 23 14 3.0541 -2.4748 -3.4258 24 1 1.8562 -3.2922 -3.7453 25 1 4.1293 -2.7674 -4.4075 26 1 3.5289 -2.8058 -2.0583 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.7516 -1.7716 1.2056 31 1 1.6054 -0.2618 2.1369 32 1 3.8532 0.4368 1.3573 33 1 3.9994 -1.0730 0.4258 34 1 3.4260 -1.7361 3.1104 35 1 5.5884 -3.1010 3.9615 36 1 5.4417 -1.5914 4.8931 37 1 7.7238 -3.7448 2.9340 38 1 7.6601 -2.2598 1.9547 39 1 9.1025 -2.6186 2.9337 40 1 8.8879 -0.8633 6.3031 41 1 9.3755 -2.6574 8.2624 42 1 8.3006 -4.9259 7.5109 43 1 2.2490 -1.6318 -1.1527 44 1 3.0606 -0.4624 -5.4350 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503577648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:40 Heat of formation + Delta-G solvation = -49.838179 kcal Electronic energy + Delta-G solvation = -23122.760678 eV Core-core repulsion = 19654.706182 eV Total energy + Delta-G solvation = -3468.054496 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.49049 -40.87774 -38.34772 -36.35992 -35.66506 -34.19083 -33.81839 -31.76152 -30.41485 -29.50426 -28.40445 -25.61330 -24.46057 -23.39932 -22.64806 -21.87683 -21.29499 -20.71103 -19.64719 -18.43440 -17.70651 -17.16136 -16.97362 -16.75190 -16.56349 -15.93399 -15.65420 -15.38499 -15.11425 -14.67418 -14.53560 -14.16825 -14.09337 -13.70595 -13.70025 -13.61875 -13.48760 -13.28123 -12.90588 -12.62145 -12.51411 -12.32635 -12.24896 -12.20551 -12.01818 -11.98396 -11.77587 -11.59475 -11.00615 -10.82546 -10.77650 -10.05591 -9.36443 -9.28880 -8.01092 -5.32650 0.82650 1.35169 1.39387 1.45768 1.65731 1.72859 2.07166 2.27921 2.48422 3.31155 3.58997 3.63652 3.69555 3.97080 3.98664 4.06615 4.16454 4.21128 4.29823 4.33648 4.41517 4.61061 4.65549 4.68905 4.77118 4.83802 4.89277 4.93551 5.02081 5.04488 5.08951 5.12885 5.18337 5.20522 5.34007 5.37449 5.51870 5.59631 5.63444 5.80833 6.23736 6.24971 6.60460 7.10823 7.31659 7.88194 8.05477 9.21013 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022074 B = 0.002851 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.158631 B = 9818.235637 C =10497.771795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 H 0.041 0.959 4 C -0.118 4.118 5 C 0.127 3.873 6 N -0.715 5.715 7 C 0.505 3.495 8 O -0.581 6.581 9 C -0.125 4.125 10 C 0.010 3.990 11 H 0.100 0.900 12 C -0.151 4.151 13 C -0.015 4.015 14 C -0.222 4.222 15 C -0.227 4.227 16 C -0.043 4.043 17 O -0.187 6.187 18 N -0.751 5.751 19 C -0.220 4.220 20 H 0.056 0.944 21 C -0.069 4.069 22 N -0.987 5.987 23 Si 0.953 3.047 24 H -0.276 1.276 25 H -0.302 1.302 26 H -0.255 1.255 27 H 0.027 0.973 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.418 0.582 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.154 0.846 41 H 0.166 0.834 42 H 0.236 0.764 43 H 0.364 0.636 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -9.333 30.071 32.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.059 0.941 4 C -0.157 4.157 5 C 0.003 3.997 6 N -0.368 5.368 7 C 0.293 3.707 8 O -0.461 6.461 9 C -0.165 4.165 10 C -0.008 4.008 11 H 0.118 0.882 12 C -0.208 4.208 13 C -0.065 4.065 14 C -0.241 4.241 15 C -0.246 4.246 16 C -0.110 4.110 17 O -0.083 6.083 18 N -0.395 5.395 19 C -0.352 4.352 20 H 0.074 0.926 21 C -0.260 4.260 22 N -0.638 5.638 23 Si 0.781 3.219 24 H -0.202 1.202 25 H -0.229 1.229 26 H -0.180 1.180 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.255 0.745 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.172 0.828 41 H 0.184 0.816 42 H 0.252 0.748 43 H 0.197 0.803 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.825 -8.980 29.244 31.344 hybrid contribution 0.333 -0.684 -0.583 0.958 sum 7.158 -9.663 28.661 31.082 Atomic orbital electron populations 1.22247 0.96699 1.01578 1.00916 1.20439 0.93324 0.95286 0.85031 0.94088 1.21955 0.92567 1.02441 0.98687 1.21145 0.95329 0.96391 0.86881 1.45930 1.07579 1.56548 1.26741 1.21161 0.82257 0.79802 0.87483 1.90709 1.56216 1.47670 1.51536 1.21729 0.95457 1.03182 0.96104 1.19405 0.93886 0.99723 0.87828 0.88173 1.21916 1.00909 1.00023 0.97978 1.22369 1.03663 0.82479 0.98026 1.21921 1.04815 1.02051 0.95313 1.22153 1.06719 0.93446 1.02318 1.24775 0.99179 1.01976 0.85100 1.83999 1.62057 1.29186 1.33106 1.42853 1.79911 1.09556 1.07152 1.19028 1.34401 0.94371 0.87359 0.92595 1.25473 1.02770 1.02365 0.95351 1.69885 1.55162 1.37605 1.01179 0.85440 0.77578 0.81187 0.77734 1.20189 1.22874 1.18023 0.95329 0.92681 0.90394 0.90088 0.87335 0.93140 0.94384 0.74479 0.86763 0.85979 0.92227 0.92032 0.92328 0.82840 0.81639 0.74828 0.80318 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.49 71.98 0.68 -4.05 16 2 C 0.17 5.80 2.89 44.99 0.13 5.93 16 3 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 4 C -0.12 -2.89 4.87 30.59 0.15 -2.74 16 5 C 0.13 3.72 5.56 86.38 0.48 4.20 16 6 N -0.72 -15.45 5.56 -463.08 -2.57 -18.02 16 7 C 0.51 12.55 7.55 87.66 0.66 13.21 16 8 O -0.58 -20.36 13.97 -3.02 -0.04 -20.40 16 9 C -0.13 -2.07 5.16 29.85 0.15 -1.92 16 10 C 0.01 0.20 2.44 -11.54 -0.03 0.18 16 11 H 0.10 2.11 7.91 -2.38 -0.02 2.09 16 12 C -0.15 -3.42 8.92 71.98 0.64 -2.78 16 13 C -0.02 -0.29 5.83 24.83 0.14 -0.14 16 14 C -0.22 -3.82 10.78 22.19 0.24 -3.58 16 15 C -0.23 -3.18 10.91 22.19 0.24 -2.94 16 16 C -0.04 -0.55 12.09 66.97 0.81 0.25 16 17 O -0.19 -3.34 10.65 -2.50 -0.03 -3.37 16 18 N -0.75 -34.10 4.38 -322.94 -1.41 -35.51 16 19 C -0.22 -12.62 10.41 84.03 0.87 -11.75 16 20 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 22 N -0.99 -64.90 13.97 21.65 0.30 -64.59 16 23 Si 0.95 46.92 27.74 68.60 1.90 48.82 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 26 H -0.26 -11.47 6.52 99.48 0.65 -10.83 16 27 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 34 H 0.42 5.47 8.47 -92.71 -0.79 4.69 16 35 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.06 1.75 5.95 -2.39 -0.01 1.73 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 42 H 0.24 1.01 8.06 -2.91 -0.02 0.99 16 43 H 0.36 15.98 5.66 -92.71 -0.52 15.45 16 44 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -78.57 365.17 3.42 -75.15 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.38 Total: 27.72 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 5.65 Total: -9.79 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -3.68 Total: -118.13 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.07 Total: -23.77 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.90 Total: 48.82 kcal Total: -78.57 3.42 -75.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503577648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.309 kcal (2) G-P(sol) polarization free energy of solvation -78.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds