Wall clock time and date at job start Tue Mar 31 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.45781 * 2 1 4 4 C 1.54478 * 110.51408 * 122.75330 * 2 1 3 5 5 O 1.44426 * 104.80584 * 142.62126 * 4 2 1 6 6 C 1.44430 * 105.27284 * 319.49192 * 5 4 2 7 7 H 1.09002 * 110.46481 * 281.62759 * 6 5 4 8 8 C 1.50703 * 110.37108 * 159.34077 * 6 5 4 9 9 O 1.21274 * 120.00014 * 359.61715 * 8 6 5 10 10 N 1.34776 * 119.99898 * 179.61752 * 8 6 5 11 11 C 1.47884 * 134.34247 * 180.02562 * 10 8 6 12 12 C 1.52372 * 85.59120 * 156.54800 * 11 10 8 13 13 C 1.47886 * 134.34351 * 0.04507 * 10 8 6 14 14 C 1.53655 * 116.38965 * 141.36089 * 12 11 10 15 15 C 1.54602 * 102.73413 * 95.49238 * 14 12 11 16 16 N 1.47130 * 107.36507 * 20.74920 * 15 14 12 17 17 C 1.36945 * 125.58629 * 180.93094 * 16 15 14 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47727 * 108.82992 * 1.19767 * 16 15 14 26 26 C 1.54478 * 104.80801 * 40.50798 * 6 5 4 27 27 H 1.09004 * 109.46547 * 182.60643 * 1 2 3 28 28 H 1.09003 * 109.46780 * 302.60371 * 1 2 3 29 29 H 1.08999 * 109.47269 * 62.60677 * 1 2 3 30 30 H 1.08998 * 110.37221 * 261.45497 * 4 2 1 31 31 H 1.09007 * 110.37108 * 23.68384 * 4 2 1 32 32 H 1.09009 * 113.85626 * 42.38014 * 11 10 8 33 33 H 1.08998 * 113.85699 * 270.71678 * 11 10 8 34 34 H 1.09004 * 113.85484 * 89.28443 * 13 10 8 35 35 H 1.09001 * 113.85754 * 317.62248 * 13 10 8 36 36 H 1.08993 * 110.75778 * 337.17662 * 14 12 11 37 37 H 1.09004 * 110.91534 * 213.87587 * 14 12 11 38 38 H 1.09002 * 109.86373 * 261.30662 * 15 14 12 39 39 H 1.08995 * 109.86843 * 140.19823 * 15 14 12 40 40 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 41 41 H 1.08992 * 110.40513 * 96.06980 * 25 16 15 42 42 H 1.08997 * 110.40257 * 218.48910 * 25 16 15 43 43 H 1.09000 * 110.51289 * 94.66242 * 26 6 5 44 44 H 1.08994 * 110.51618 * 217.23915 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0714 -0.7828 1.2168 5 8 3.2399 -1.4723 0.7219 6 6 2.8757 -1.9414 -0.5947 7 1 2.2570 -2.8359 -0.5229 8 6 4.1105 -2.2231 -1.4114 9 8 5.2094 -2.0388 -0.9325 10 7 3.9937 -2.6798 -2.6740 11 6 4.9576 -3.0518 -3.7320 12 6 3.8301 -3.9087 -4.2943 13 6 2.8504 -3.0079 -3.5529 14 6 3.6995 -3.9470 -5.8248 15 6 4.4806 -5.2268 -6.2016 16 7 4.5494 -6.0697 -4.9976 17 6 5.1754 -7.2846 -4.9100 18 1 5.1697 -7.8289 -3.9773 19 6 5.8171 -7.8163 -6.0201 20 7 5.8245 -7.1526 -7.1567 21 14 6.6716 -9.4731 -5.9004 22 1 8.0843 -9.2729 -5.4890 23 1 5.9777 -10.3164 -4.8941 24 1 6.6320 -10.1471 -7.2231 25 6 3.8271 -5.3938 -3.9005 26 6 2.0713 -0.7798 -1.2192 27 1 -0.3632 -1.0267 0.0467 28 1 -0.3633 0.5538 0.8658 29 1 -0.3634 0.4728 -0.9124 30 1 2.3465 -0.0964 2.0176 31 1 1.3279 -1.4977 1.5694 32 1 5.8098 -3.6270 -3.3696 33 1 5.2451 -2.2223 -4.3780 34 1 2.4927 -2.1648 -4.1441 35 1 2.0486 -3.5484 -3.0499 36 1 4.1599 -3.0670 -6.2739 37 1 2.6547 -4.0298 -6.1242 38 1 5.4870 -4.9640 -6.5277 39 1 3.9586 -5.7588 -6.9969 40 1 6.2733 -7.5240 -7.9323 41 1 2.8062 -5.7689 -3.8299 42 1 4.3514 -5.5367 -2.9557 43 1 2.7218 -0.1447 -1.8205 44 1 1.2505 -1.1653 -1.8238 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688118059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:11 Heat of formation + Delta-G solvation = -15.896662 kcal Electronic energy + Delta-G solvation = -24389.412005 eV Core-core repulsion = 20922.829324 eV Total energy + Delta-G solvation = -3466.582681 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77998 -39.71553 -37.76077 -35.59865 -33.85664 -32.29654 -30.89449 -29.43878 -28.15016 -26.62961 -26.21266 -25.82753 -24.06373 -23.08401 -20.81153 -20.32612 -19.38829 -18.31248 -17.31989 -16.86969 -16.53118 -16.09525 -15.34747 -15.17075 -14.99460 -14.66994 -14.35310 -14.03311 -13.71734 -13.52979 -13.36256 -12.96684 -12.63838 -12.52315 -12.38288 -11.92380 -11.81566 -11.77098 -11.54156 -11.19149 -11.09097 -11.01189 -10.93544 -10.75671 -10.41796 -10.24012 -10.10062 -10.06780 -9.88137 -9.67953 -9.36111 -8.60615 -8.54674 -6.85152 -5.72210 -3.05727 2.66639 2.68708 3.40984 3.46315 3.47598 3.74979 4.07685 4.32736 4.46199 4.47568 4.59346 4.65847 4.85293 4.88942 5.00646 5.08859 5.19036 5.21586 5.30216 5.41270 5.44105 5.44480 5.50690 5.51586 5.65743 5.66761 5.67391 5.70414 5.83900 5.89251 5.99728 6.15224 6.20447 6.44820 6.47767 6.51812 6.65018 6.69482 7.54516 7.59099 7.80081 7.81444 8.24218 8.26011 9.21244 9.80849 10.45780 11.39430 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029867 B = 0.003325 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.268926 B = 8418.650657 C = 8763.261392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 H 0.086 0.914 4 C 0.045 3.955 5 O -0.345 6.345 6 C 0.064 3.936 7 H 0.093 0.907 8 C 0.538 3.462 9 O -0.527 6.527 10 N -0.639 5.639 11 C 0.133 3.867 12 C -0.104 4.104 13 C 0.112 3.888 14 C -0.131 4.131 15 C 0.178 3.822 16 N -0.605 5.605 17 C -0.228 4.228 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.281 1.281 24 H -0.291 1.291 25 C 0.161 3.839 26 C -0.138 4.138 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.252 0.748 41 H 0.025 0.975 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.214 14.936 9.459 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 H 0.104 0.896 4 C -0.032 4.032 5 O -0.263 6.263 6 C 0.003 3.997 7 H 0.111 0.889 8 C 0.326 3.674 9 O -0.402 6.402 10 N -0.376 5.376 11 C 0.011 3.989 12 C -0.106 4.106 13 C -0.011 4.011 14 C -0.170 4.170 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.356 4.356 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.207 1.207 24 H -0.217 1.217 25 C 0.035 3.965 26 C -0.176 4.176 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.256 14.924 9.912 21.707 hybrid contribution 0.210 -0.796 -0.127 0.833 sum -12.046 14.128 9.786 20.987 Atomic orbital electron populations 1.21825 0.93698 1.02306 1.02273 1.22545 0.96741 1.00589 0.94638 0.89607 1.23594 0.88020 0.95077 0.96508 1.89286 1.34768 1.73680 1.28536 1.22763 0.93947 0.98392 0.84632 0.88919 1.19785 0.90166 0.76639 0.80841 1.90722 1.27917 1.51364 1.70205 1.50160 1.11428 1.65220 1.10785 1.22964 0.94476 0.96182 0.85240 1.22510 0.94598 0.96606 0.96840 1.23125 0.91119 0.97158 0.89652 1.22671 1.01026 1.00853 0.92451 1.21210 0.97787 0.86489 0.89150 1.44552 1.62344 1.19806 1.06420 1.19049 1.26550 0.93382 0.96643 0.90478 1.24784 1.00881 0.98904 0.95780 1.69956 1.47936 1.38083 1.00997 0.86121 0.79568 0.83329 0.76763 1.21582 1.20706 1.21685 1.21095 0.95654 0.87170 0.92568 1.22972 0.99929 0.96449 0.98260 0.92183 0.92214 0.92043 0.88738 0.91823 0.89485 0.89835 0.89512 0.90026 0.91757 0.91701 0.93443 0.93820 0.93763 0.95759 0.94146 0.90286 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 8.97 37.16 0.33 -0.46 16 2 C -0.13 -0.96 3.72 -89.05 -0.33 -1.29 16 3 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 4 C 0.04 0.41 7.18 37.93 0.27 0.68 16 5 O -0.34 -4.87 10.91 -54.45 -0.59 -5.47 16 6 C 0.06 0.79 3.48 -27.11 -0.09 0.70 16 7 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 8 C 0.54 8.77 7.31 -10.98 -0.08 8.69 16 9 O -0.53 -11.08 17.28 -13.66 -0.24 -11.32 16 10 N -0.64 -9.39 3.61 -186.92 -0.67 -10.06 16 11 C 0.13 2.13 8.16 -3.60 -0.03 2.10 16 12 C -0.10 -1.63 0.99 -154.73 -0.15 -1.78 16 13 C 0.11 1.32 7.66 -3.62 -0.03 1.29 16 14 C -0.13 -2.15 6.36 -25.55 -0.16 -2.31 16 15 C 0.18 4.09 5.39 -2.86 -0.02 4.07 16 16 N -0.60 -14.96 3.41 -170.36 -0.58 -15.54 16 17 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -26.66 10.30 55.49 0.57 -26.09 16 21 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.16 3.18 6.65 -3.03 -0.02 3.16 16 26 C -0.14 -1.25 5.91 -25.16 -0.15 -1.39 16 27 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.48 7.83 -51.92 -0.41 0.08 16 32 H 0.09 1.63 8.13 -51.92 -0.42 1.21 16 33 H 0.08 1.19 8.04 -51.93 -0.42 0.78 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.83 8.12 -51.93 -0.42 0.40 16 36 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 39 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 43 H 0.08 0.78 7.86 -51.93 -0.41 0.38 16 44 H 0.09 0.61 7.74 -51.93 -0.40 0.21 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -33.88 351.93 -9.37 -43.25 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -7.43 Total: -3.88 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.71 Total: 6.71 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.68 Total: -51.69 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.83 Total: -16.78 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.88 -9.37 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688118059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.354 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds