Wall clock time and date at job start Tue Mar 31 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.45781 * 2 1 4 4 C 1.54478 * 110.51408 * 122.75330 * 2 1 3 5 5 O 1.44426 * 104.80584 * 142.62126 * 4 2 1 6 6 C 1.44430 * 105.27284 * 319.49192 * 5 4 2 7 7 H 1.09002 * 110.46481 * 281.62759 * 6 5 4 8 8 C 1.50703 * 110.37108 * 159.34077 * 6 5 4 9 9 O 1.21274 * 120.00014 * 359.61715 * 8 6 5 10 10 N 1.34776 * 119.99898 * 179.61752 * 8 6 5 11 11 C 1.47884 * 134.34247 * 180.02562 * 10 8 6 12 12 C 1.52372 * 85.59120 * 156.54800 * 11 10 8 13 13 C 1.47886 * 134.34351 * 0.04507 * 10 8 6 14 14 C 1.53655 * 116.38965 * 141.36089 * 12 11 10 15 15 C 1.54602 * 102.73413 * 95.49238 * 14 12 11 16 16 N 1.47130 * 107.36507 * 20.74920 * 15 14 12 17 17 C 1.36945 * 125.58629 * 180.93094 * 16 15 14 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47727 * 108.82992 * 1.19767 * 16 15 14 26 26 C 1.54478 * 104.80801 * 40.50798 * 6 5 4 27 27 H 1.09004 * 109.46547 * 182.60643 * 1 2 3 28 28 H 1.09003 * 109.46780 * 302.60371 * 1 2 3 29 29 H 1.08999 * 109.47269 * 62.60677 * 1 2 3 30 30 H 1.08998 * 110.37221 * 261.45497 * 4 2 1 31 31 H 1.09007 * 110.37108 * 23.68384 * 4 2 1 32 32 H 1.09009 * 113.85626 * 42.38014 * 11 10 8 33 33 H 1.08998 * 113.85699 * 270.71678 * 11 10 8 34 34 H 1.09004 * 113.85484 * 89.28443 * 13 10 8 35 35 H 1.09001 * 113.85754 * 317.62248 * 13 10 8 36 36 H 1.08993 * 110.75778 * 337.17662 * 14 12 11 37 37 H 1.09004 * 110.91534 * 213.87587 * 14 12 11 38 38 H 1.09002 * 109.86373 * 261.30662 * 15 14 12 39 39 H 1.08995 * 109.86843 * 140.19823 * 15 14 12 40 40 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 41 41 H 1.08992 * 110.40513 * 96.06980 * 25 16 15 42 42 H 1.08997 * 110.40257 * 218.48910 * 25 16 15 43 43 H 1.09000 * 110.51289 * 94.66242 * 26 6 5 44 44 H 1.08994 * 110.51618 * 217.23915 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0714 -0.7828 1.2168 5 8 3.2399 -1.4723 0.7219 6 6 2.8757 -1.9414 -0.5947 7 1 2.2570 -2.8359 -0.5229 8 6 4.1105 -2.2231 -1.4114 9 8 5.2094 -2.0388 -0.9325 10 7 3.9937 -2.6798 -2.6740 11 6 4.9576 -3.0518 -3.7320 12 6 3.8301 -3.9087 -4.2943 13 6 2.8504 -3.0079 -3.5529 14 6 3.6995 -3.9470 -5.8248 15 6 4.4806 -5.2268 -6.2016 16 7 4.5494 -6.0697 -4.9976 17 6 5.1754 -7.2846 -4.9100 18 1 5.1697 -7.8289 -3.9773 19 6 5.8171 -7.8163 -6.0201 20 7 5.8245 -7.1526 -7.1567 21 14 6.6716 -9.4731 -5.9004 22 1 8.0843 -9.2729 -5.4890 23 1 5.9777 -10.3164 -4.8941 24 1 6.6320 -10.1471 -7.2231 25 6 3.8271 -5.3938 -3.9005 26 6 2.0713 -0.7798 -1.2192 27 1 -0.3632 -1.0267 0.0467 28 1 -0.3633 0.5538 0.8658 29 1 -0.3634 0.4728 -0.9124 30 1 2.3465 -0.0964 2.0176 31 1 1.3279 -1.4977 1.5694 32 1 5.8098 -3.6270 -3.3696 33 1 5.2451 -2.2223 -4.3780 34 1 2.4927 -2.1648 -4.1441 35 1 2.0486 -3.5484 -3.0499 36 1 4.1599 -3.0670 -6.2739 37 1 2.6547 -4.0298 -6.1242 38 1 5.4870 -4.9640 -6.5277 39 1 3.9586 -5.7588 -6.9969 40 1 6.2733 -7.5240 -7.9323 41 1 2.8062 -5.7689 -3.8299 42 1 4.3514 -5.5367 -2.9557 43 1 2.7218 -0.1447 -1.8205 44 1 1.2505 -1.1653 -1.8238 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688118059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:10 Heat of formation + Delta-G solvation = -38.375009 kcal Electronic energy + Delta-G solvation = -24390.386739 eV Core-core repulsion = 20922.829324 eV Total energy + Delta-G solvation = -3467.557415 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.94868 -40.70859 -39.04325 -37.23698 -34.55601 -34.12631 -32.08149 -30.99609 -29.52277 -27.60446 -27.30261 -27.08880 -25.56332 -24.19383 -22.12026 -21.43572 -20.56889 -19.62518 -18.79746 -18.30928 -17.59834 -17.10943 -16.78941 -16.31040 -16.21739 -16.10808 -15.58677 -15.39594 -14.82958 -14.75520 -14.21283 -14.04835 -13.85473 -13.74179 -13.67304 -13.24899 -13.13884 -12.89166 -12.79870 -12.68053 -12.44301 -12.18163 -12.02764 -11.93813 -11.80443 -11.66280 -11.64671 -11.57651 -11.27719 -10.98939 -10.69179 -10.57649 -9.76083 -8.87368 -7.84962 -5.19348 1.44500 1.46217 1.49318 1.54452 1.57153 2.48612 2.90828 3.24309 3.29117 3.42184 3.58604 3.65504 3.76763 3.84887 3.90789 4.13139 4.17131 4.19422 4.25271 4.39756 4.55059 4.58005 4.65428 4.66265 4.70700 4.76626 4.80244 4.83799 4.87206 4.90439 5.00105 5.07835 5.12740 5.16016 5.25557 5.25953 5.40852 5.45649 5.74344 5.75070 5.82848 6.22213 6.64787 7.04745 7.12665 7.79332 8.41970 9.24639 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029867 B = 0.003325 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.268926 B = 8418.650657 C = 8763.261392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 H 0.084 0.916 4 C 0.037 3.963 5 O -0.389 6.389 6 C 0.066 3.934 7 H 0.114 0.886 8 C 0.529 3.471 9 O -0.590 6.590 10 N -0.636 5.636 11 C 0.123 3.877 12 C -0.098 4.098 13 C 0.133 3.867 14 C -0.109 4.109 15 C 0.182 3.818 16 N -0.628 5.628 17 C -0.243 4.243 18 H 0.075 0.925 19 C -0.063 4.063 20 N -0.947 5.947 21 Si 0.973 3.027 22 H -0.290 1.290 23 H -0.270 1.270 24 H -0.291 1.291 25 C 0.158 3.842 26 C -0.131 4.131 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.007 0.993 39 H 0.009 0.991 40 H 0.247 0.753 41 H 0.043 0.957 42 H 0.021 0.979 43 H 0.068 0.932 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.526 16.381 9.819 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 H 0.103 0.897 4 C -0.039 4.039 5 O -0.308 6.308 6 C 0.005 3.995 7 H 0.131 0.869 8 C 0.319 3.681 9 O -0.471 6.471 10 N -0.372 5.372 11 C 0.001 3.999 12 C -0.099 4.099 13 C 0.012 3.988 14 C -0.148 4.148 15 C 0.057 3.943 16 N -0.355 5.355 17 C -0.372 4.372 18 H 0.093 0.907 19 C -0.256 4.256 20 N -0.596 5.596 21 Si 0.802 3.198 22 H -0.218 1.218 23 H -0.195 1.195 24 H -0.217 1.217 25 C 0.033 3.967 26 C -0.169 4.169 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.149 0.851 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.025 0.975 39 H 0.027 0.973 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.087 0.913 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.632 16.380 10.280 24.866 hybrid contribution 1.281 -1.272 -0.190 1.815 sum -14.351 15.108 10.090 23.152 Atomic orbital electron populations 1.21806 0.91621 1.02994 1.03176 1.22525 0.98284 0.99990 0.93120 0.89721 1.23868 0.87078 0.95578 0.97384 1.89252 1.37494 1.74532 1.29498 1.22891 0.92071 1.00594 0.83935 0.86898 1.20648 0.90783 0.75538 0.81153 1.90683 1.30541 1.54261 1.71572 1.50210 1.12289 1.64159 1.10507 1.22991 0.93784 0.96813 0.86286 1.22335 0.96541 0.94439 0.96608 1.23359 0.89847 0.97394 0.88237 1.22514 1.01756 0.97865 0.92652 1.21018 0.96283 0.88975 0.88025 1.44859 1.62528 1.19533 1.08548 1.19385 1.26507 0.94778 0.96521 0.90725 1.25564 1.02080 1.02284 0.95686 1.70170 1.48774 1.39323 1.01334 0.85157 0.78246 0.79685 0.76729 1.21752 1.19522 1.21719 1.21255 0.95329 0.89812 0.90337 1.23021 1.00055 0.95049 0.98770 0.91561 0.91471 0.91078 0.88147 0.90164 0.93631 0.87625 0.85071 0.87172 0.89211 0.88720 0.97516 0.97273 0.94413 0.93965 0.96090 0.91282 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.97 71.98 0.65 -0.28 16 2 C -0.12 -1.45 3.72 -9.77 -0.04 -1.48 16 3 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.04 0.59 7.18 72.48 0.52 1.11 16 5 O -0.39 -10.70 10.91 -130.60 -1.43 -12.13 16 6 C 0.07 1.49 3.48 30.35 0.11 1.60 16 7 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 8 C 0.53 16.89 7.31 87.66 0.64 17.53 16 9 O -0.59 -25.74 17.28 15.36 0.27 -25.47 16 10 N -0.64 -17.42 3.61 -863.68 -3.12 -20.53 16 11 C 0.12 3.88 8.16 85.91 0.70 4.58 16 12 C -0.10 -2.83 0.99 -52.08 -0.05 -2.88 16 13 C 0.13 2.44 7.66 85.90 0.66 3.09 16 14 C -0.11 -3.28 6.36 31.36 0.20 -3.08 16 15 C 0.18 8.48 5.39 86.80 0.47 8.95 16 16 N -0.63 -31.70 3.41 -692.89 -2.36 -34.06 16 17 C -0.24 -13.78 10.28 84.03 0.86 -12.92 16 18 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 19 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 20 N -0.95 -56.79 10.30 21.65 0.22 -56.56 16 21 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 C 0.16 6.11 6.65 86.36 0.57 6.69 16 26 C -0.13 -1.87 5.91 31.61 0.19 -1.69 16 27 H 0.07 0.39 8.08 -2.39 -0.02 0.37 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 0.99 7.83 -2.38 -0.02 0.98 16 32 H 0.05 1.80 8.13 -2.38 -0.02 1.78 16 33 H 0.11 2.85 8.04 -2.39 -0.02 2.83 16 34 H 0.13 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.11 1.52 8.12 -2.39 -0.02 1.50 16 36 H 0.09 2.29 7.99 -2.39 -0.02 2.27 16 37 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.01 0.35 7.38 -2.39 -0.02 0.34 16 39 H 0.01 0.48 7.50 -2.39 -0.02 0.46 16 40 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 42 H 0.02 0.88 8.08 -2.39 -0.02 0.86 16 43 H 0.07 1.15 7.86 -2.39 -0.02 1.13 16 44 H 0.12 0.95 7.74 -2.39 -0.02 0.93 16 Total: -1.00 -80.88 351.93 2.52 -78.36 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 0.96 Total: 3.77 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 5.94 Total: 18.07 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -5.25 Total: -111.16 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -1.16 Total: -37.60 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -80.88 2.52 -78.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688118059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.986 kcal (2) G-P(sol) polarization free energy of solvation -80.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds