Wall clock time and date at job start Tue Mar 31 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.45882 * 2 1 4 4 C 1.54480 * 110.51342 * 237.25151 * 2 1 3 5 5 O 1.44419 * 104.80593 * 217.37710 * 4 2 1 6 6 C 1.44420 * 105.27613 * 40.50997 * 5 4 2 7 7 H 1.08993 * 110.37318 * 78.32054 * 6 5 4 8 8 C 1.50704 * 110.37308 * 200.65815 * 6 5 4 9 9 O 1.21282 * 119.99904 * 0.38514 * 8 6 5 10 10 N 1.34774 * 119.99916 * 180.37790 * 8 6 5 11 11 C 1.47393 * 135.85641 * 359.63653 * 10 8 6 12 12 C 1.52070 * 87.41148 * 154.38268 * 11 10 8 13 13 C 1.47394 * 135.85353 * 180.02562 * 10 8 6 14 14 C 1.53509 * 117.21560 * 267.28008 * 12 11 10 15 15 C 1.54636 * 102.70216 * 262.93411 * 14 12 11 16 16 N 1.47153 * 107.37677 * 339.38032 * 15 14 12 17 17 C 1.36934 * 125.58233 * 179.06544 * 16 15 14 18 18 H 1.07994 * 120.00024 * 180.02562 * 17 16 15 19 19 C 1.38812 * 119.99911 * 0.03006 * 17 16 15 20 20 N 1.31619 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47328 * 89.99833 * 21 19 17 23 23 H 1.48506 * 109.47063 * 210.00019 * 21 19 17 24 24 H 1.48500 * 109.47217 * 329.99540 * 21 19 17 25 25 C 1.47758 * 108.83856 * 359.09348 * 16 15 14 26 26 C 1.54478 * 104.80211 * 319.48827 * 6 5 4 27 27 H 1.09002 * 109.47153 * 297.39037 * 1 2 3 28 28 H 1.09001 * 109.46832 * 177.39228 * 1 2 3 29 29 H 1.09004 * 109.47261 * 57.39209 * 1 2 3 30 30 H 1.09004 * 110.36876 * 336.20686 * 4 2 1 31 31 H 1.09008 * 110.37513 * 98.54046 * 4 2 1 32 32 H 1.08999 * 113.54360 * 268.99625 * 11 10 8 33 33 H 1.09004 * 113.54133 * 39.67055 * 11 10 8 34 34 H 1.09007 * 113.53914 * 320.32549 * 13 10 8 35 35 H 1.08996 * 113.54977 * 90.92996 * 13 10 8 36 36 H 1.08995 * 110.76546 * 21.23473 * 14 12 11 37 37 H 1.09002 * 110.76712 * 144.62972 * 14 12 11 38 38 H 1.08997 * 109.86707 * 98.82837 * 15 14 12 39 39 H 1.08999 * 109.86037 * 219.93847 * 15 14 12 40 40 H 0.97000 * 119.99842 * 179.97438 * 20 19 17 41 41 H 1.09000 * 110.40127 * 263.50466 * 25 16 15 42 42 H 1.08996 * 110.40930 * 141.08044 * 25 16 15 43 43 H 1.09001 * 110.51463 * 265.33326 * 26 6 5 44 44 H 1.09000 * 110.51198 * 142.62658 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7827 -1.2169 5 8 3.2398 -1.4722 -0.7221 6 6 2.8757 -1.9414 0.5944 7 1 2.2564 -2.8353 0.5207 8 6 4.1106 -2.2232 1.4110 9 8 5.2095 -2.0388 0.9320 10 7 3.9938 -2.6799 2.6736 11 6 2.8794 -3.0115 3.5796 12 6 3.8302 -3.9628 4.2892 13 6 4.9248 -3.0587 3.7517 14 6 3.8404 -5.4245 3.8204 15 6 2.9029 -6.1146 4.8384 16 7 2.8348 -5.2515 6.0283 17 6 2.0925 -5.5005 7.1517 18 1 2.1090 -4.8024 7.9755 19 6 1.3189 -6.6503 7.2317 20 7 1.2985 -7.5009 6.2276 21 14 0.3069 -6.9903 8.7645 22 1 -1.0431 -6.3916 8.6092 23 1 0.1786 -8.4571 8.9577 24 1 0.9806 -6.3926 9.9452 25 6 3.6980 -4.0720 5.8122 26 6 2.0715 -0.7798 1.2190 27 1 -0.3633 0.4728 0.9125 28 1 -0.3633 -1.0266 -0.0468 29 1 -0.3634 0.5538 -0.8657 30 1 1.3285 -1.4989 -1.5683 31 1 2.3464 -0.0963 -2.0178 32 1 2.5582 -2.1743 4.1992 33 1 2.0490 -3.5134 3.0828 34 1 5.8026 -3.6001 3.3987 35 1 5.1770 -2.2345 4.4188 36 1 3.4420 -5.5089 2.8094 37 1 4.8459 -5.8415 3.8768 38 1 1.9085 -6.2299 4.4071 39 1 3.3060 -7.0900 5.1109 40 1 0.7583 -8.3046 6.2836 41 1 4.6757 -4.2279 6.2682 42 1 3.2269 -3.1767 6.2179 43 1 2.7220 -0.1448 1.8204 44 1 1.2491 -1.1654 1.8217 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688118060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:13 Heat of formation + Delta-G solvation = -13.549030 kcal Electronic energy + Delta-G solvation = -24444.049185 eV Core-core repulsion = 20977.568305 eV Total energy + Delta-G solvation = -3466.480880 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87128 -39.76669 -37.80811 -35.68486 -33.82024 -32.30686 -30.93460 -29.27823 -28.50532 -26.56691 -26.02330 -25.81927 -24.11674 -23.08899 -20.77211 -20.34680 -19.45826 -18.39275 -17.28878 -16.75127 -16.52498 -16.15734 -15.41605 -15.13905 -15.05874 -14.68807 -14.34971 -14.00722 -13.81554 -13.54166 -13.30268 -12.96875 -12.59195 -12.49880 -12.27135 -12.01394 -11.89358 -11.80470 -11.50140 -11.14595 -11.03800 -10.97369 -10.94611 -10.70877 -10.44249 -10.22415 -10.14361 -10.09291 -9.87664 -9.69456 -9.45703 -8.63938 -8.58078 -6.88136 -5.75323 -3.09151 2.62957 2.65907 3.37036 3.42606 3.44457 3.78380 4.11970 4.35844 4.43640 4.51559 4.59854 4.64983 4.88472 4.90346 5.01217 5.14142 5.22022 5.26162 5.36454 5.43723 5.46238 5.48336 5.52785 5.62865 5.63401 5.72076 5.72854 5.76417 5.79066 5.85296 5.90689 6.13245 6.20208 6.42032 6.48046 6.52711 6.62734 6.67232 7.51593 7.57607 7.77893 7.79549 8.20253 8.21675 9.17434 9.77493 10.42963 11.36208 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021045 B = 0.003652 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.148299 B = 7666.092026 C = 8389.657410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 H 0.085 0.915 4 C 0.045 3.955 5 O -0.346 6.346 6 C 0.065 3.935 7 H 0.095 0.905 8 C 0.546 3.454 9 O -0.530 6.530 10 N -0.642 5.642 11 C 0.119 3.881 12 C -0.105 4.105 13 C 0.121 3.879 14 C -0.117 4.117 15 C 0.180 3.820 16 N -0.605 5.605 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.154 3.846 26 C -0.139 4.139 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.252 0.748 41 H 0.027 0.973 42 H 0.042 0.958 43 H 0.078 0.922 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 13.206 -10.625 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 H 0.104 0.896 4 C -0.032 4.032 5 O -0.264 6.264 6 C 0.004 3.996 7 H 0.112 0.888 8 C 0.335 3.665 9 O -0.406 6.406 10 N -0.378 5.378 11 C -0.003 4.003 12 C -0.107 4.107 13 C -0.001 4.001 14 C -0.156 4.156 15 C 0.055 3.945 16 N -0.332 5.332 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.027 3.973 26 C -0.177 4.177 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.140 13.178 -11.162 17.271 hybrid contribution -0.838 -0.191 0.889 1.236 sum -0.978 12.987 -10.273 16.588 Atomic orbital electron populations 1.21832 0.93629 1.02424 1.02305 1.22538 0.96828 1.00520 0.94567 0.89624 1.23605 0.87958 0.95086 0.96515 1.89261 1.34913 1.73722 1.28510 1.22741 0.93751 0.98594 0.84563 0.88778 1.19646 0.90177 0.76392 0.80306 1.90710 1.27949 1.51727 1.70215 1.49752 1.12420 1.65127 1.10535 1.22925 0.91404 0.96860 0.89131 1.22188 0.94963 0.95371 0.98152 1.22788 0.94819 0.96689 0.85815 1.22474 1.01120 0.92244 0.99726 1.21226 0.96111 0.92638 0.84523 1.44546 1.51885 1.20487 1.16235 1.19045 1.19101 1.04532 0.93052 0.90390 1.24791 1.00365 0.97154 0.98023 1.69959 1.43779 1.12684 1.30470 0.86132 0.80154 0.77246 0.82291 1.21631 1.21701 1.20697 1.21137 0.94696 0.91673 0.89795 1.22983 1.00047 0.96360 0.98308 0.91967 0.92102 0.92225 0.91767 0.88712 0.89431 0.90132 0.90377 0.89714 0.92097 0.91734 0.93516 0.93786 0.93738 0.95531 0.93932 0.90296 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.97 37.16 0.33 -0.62 16 2 C -0.13 -1.05 3.72 -89.05 -0.33 -1.38 16 3 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.05 0.43 7.18 37.93 0.27 0.70 16 5 O -0.35 -4.92 10.91 -54.45 -0.59 -5.52 16 6 C 0.06 0.83 3.54 -27.11 -0.10 0.74 16 7 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 8 C 0.55 8.76 7.33 -10.98 -0.08 8.68 16 9 O -0.53 -10.66 17.32 -13.66 -0.24 -10.89 16 10 N -0.64 -9.29 3.68 -185.71 -0.68 -9.98 16 11 C 0.12 1.63 7.54 -7.33 -0.06 1.57 16 12 C -0.11 -1.65 1.06 -155.21 -0.16 -1.81 16 13 C 0.12 1.70 8.03 -7.47 -0.06 1.64 16 14 C -0.12 -2.07 6.41 -25.61 -0.16 -2.24 16 15 C 0.18 4.11 5.39 -2.83 -0.02 4.09 16 16 N -0.60 -14.41 3.41 -170.53 -0.58 -14.99 16 17 C -0.23 -6.06 10.28 -15.06 -0.15 -6.22 16 18 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -26.13 10.30 55.49 0.57 -25.56 16 21 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.15 2.84 6.70 -3.22 -0.02 2.82 16 26 C -0.14 -1.39 6.01 -25.17 -0.15 -1.54 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 31 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.09 1.06 8.06 -51.93 -0.42 0.64 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.12 8.13 -51.92 -0.42 0.70 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 39 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 43 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 44 H 0.09 0.78 7.73 -51.93 -0.40 0.38 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -32.44 352.21 -9.46 -41.90 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -7.44 Total: -2.74 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.78 Total: 6.15 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.69 Total: -50.53 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.83 Total: -16.41 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.44 -9.46 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688118060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.353 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds