Wall clock time and date at job start Tue Mar 31 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.45882 * 2 1 4 4 C 1.54480 * 110.51342 * 237.25151 * 2 1 3 5 5 O 1.44419 * 104.80593 * 217.37710 * 4 2 1 6 6 C 1.44420 * 105.27613 * 40.50997 * 5 4 2 7 7 H 1.08993 * 110.37318 * 78.32054 * 6 5 4 8 8 C 1.50704 * 110.37308 * 200.65815 * 6 5 4 9 9 O 1.21282 * 119.99904 * 0.38514 * 8 6 5 10 10 N 1.34774 * 119.99916 * 180.37790 * 8 6 5 11 11 C 1.47393 * 135.85641 * 359.63653 * 10 8 6 12 12 C 1.52070 * 87.41148 * 154.38268 * 11 10 8 13 13 C 1.47394 * 135.85353 * 180.02562 * 10 8 6 14 14 C 1.53509 * 117.21560 * 267.28008 * 12 11 10 15 15 C 1.54636 * 102.70216 * 262.93411 * 14 12 11 16 16 N 1.47153 * 107.37677 * 339.38032 * 15 14 12 17 17 C 1.36934 * 125.58233 * 179.06544 * 16 15 14 18 18 H 1.07994 * 120.00024 * 180.02562 * 17 16 15 19 19 C 1.38812 * 119.99911 * 0.03006 * 17 16 15 20 20 N 1.31619 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47328 * 89.99833 * 21 19 17 23 23 H 1.48506 * 109.47063 * 210.00019 * 21 19 17 24 24 H 1.48500 * 109.47217 * 329.99540 * 21 19 17 25 25 C 1.47758 * 108.83856 * 359.09348 * 16 15 14 26 26 C 1.54478 * 104.80211 * 319.48827 * 6 5 4 27 27 H 1.09002 * 109.47153 * 297.39037 * 1 2 3 28 28 H 1.09001 * 109.46832 * 177.39228 * 1 2 3 29 29 H 1.09004 * 109.47261 * 57.39209 * 1 2 3 30 30 H 1.09004 * 110.36876 * 336.20686 * 4 2 1 31 31 H 1.09008 * 110.37513 * 98.54046 * 4 2 1 32 32 H 1.08999 * 113.54360 * 268.99625 * 11 10 8 33 33 H 1.09004 * 113.54133 * 39.67055 * 11 10 8 34 34 H 1.09007 * 113.53914 * 320.32549 * 13 10 8 35 35 H 1.08996 * 113.54977 * 90.92996 * 13 10 8 36 36 H 1.08995 * 110.76546 * 21.23473 * 14 12 11 37 37 H 1.09002 * 110.76712 * 144.62972 * 14 12 11 38 38 H 1.08997 * 109.86707 * 98.82837 * 15 14 12 39 39 H 1.08999 * 109.86037 * 219.93847 * 15 14 12 40 40 H 0.97000 * 119.99842 * 179.97438 * 20 19 17 41 41 H 1.09000 * 110.40127 * 263.50466 * 25 16 15 42 42 H 1.08996 * 110.40930 * 141.08044 * 25 16 15 43 43 H 1.09001 * 110.51463 * 265.33326 * 26 6 5 44 44 H 1.09000 * 110.51198 * 142.62658 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7827 -1.2169 5 8 3.2398 -1.4722 -0.7221 6 6 2.8757 -1.9414 0.5944 7 1 2.2564 -2.8353 0.5207 8 6 4.1106 -2.2232 1.4110 9 8 5.2095 -2.0388 0.9320 10 7 3.9938 -2.6799 2.6736 11 6 2.8794 -3.0115 3.5796 12 6 3.8302 -3.9628 4.2892 13 6 4.9248 -3.0587 3.7517 14 6 3.8404 -5.4245 3.8204 15 6 2.9029 -6.1146 4.8384 16 7 2.8348 -5.2515 6.0283 17 6 2.0925 -5.5005 7.1517 18 1 2.1090 -4.8024 7.9755 19 6 1.3189 -6.6503 7.2317 20 7 1.2985 -7.5009 6.2276 21 14 0.3069 -6.9903 8.7645 22 1 -1.0431 -6.3916 8.6092 23 1 0.1786 -8.4571 8.9577 24 1 0.9806 -6.3926 9.9452 25 6 3.6980 -4.0720 5.8122 26 6 2.0715 -0.7798 1.2190 27 1 -0.3633 0.4728 0.9125 28 1 -0.3633 -1.0266 -0.0468 29 1 -0.3634 0.5538 -0.8657 30 1 1.3285 -1.4989 -1.5683 31 1 2.3464 -0.0963 -2.0178 32 1 2.5582 -2.1743 4.1992 33 1 2.0490 -3.5134 3.0828 34 1 5.8026 -3.6001 3.3987 35 1 5.1770 -2.2345 4.4188 36 1 3.4420 -5.5089 2.8094 37 1 4.8459 -5.8415 3.8768 38 1 1.9085 -6.2299 4.4071 39 1 3.3060 -7.0900 5.1109 40 1 0.7583 -8.3046 6.2836 41 1 4.6757 -4.2279 6.2682 42 1 3.2269 -3.1767 6.2179 43 1 2.7220 -0.1448 1.8204 44 1 1.2491 -1.1654 1.8217 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688118060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:13 Heat of formation + Delta-G solvation = -33.591903 kcal Electronic energy + Delta-G solvation = -24444.918309 eV Core-core repulsion = 20977.568305 eV Total energy + Delta-G solvation = -3467.350004 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06513 -40.77707 -39.07304 -37.29741 -34.58754 -34.08999 -32.11214 -30.89761 -29.85476 -27.45044 -27.17620 -27.09323 -25.66588 -24.20914 -22.12264 -21.47931 -20.65796 -19.73549 -18.56871 -18.33188 -17.62258 -17.20625 -16.74231 -16.41049 -16.18511 -16.12991 -15.59442 -15.43110 -14.87865 -14.74720 -14.22151 -14.06531 -13.89377 -13.70825 -13.67654 -13.29647 -13.20490 -12.86776 -12.78779 -12.70629 -12.25684 -12.21276 -12.00907 -11.89569 -11.81246 -11.78018 -11.66310 -11.60768 -11.21743 -11.03905 -10.67481 -10.64090 -9.78648 -8.83222 -7.79306 -5.13922 1.44421 1.51131 1.52042 1.55188 1.60613 2.54317 2.87288 3.20244 3.31082 3.44309 3.56244 3.58801 3.79784 3.82952 3.86003 4.06053 4.13308 4.20199 4.23171 4.40976 4.51883 4.55647 4.60116 4.63107 4.70393 4.71583 4.74475 4.81040 4.84804 4.86954 4.94128 5.04921 5.07767 5.18293 5.20986 5.21840 5.36255 5.53123 5.69544 5.70355 5.82317 6.24505 6.60781 7.00997 7.15816 7.83401 8.47601 9.31145 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021045 B = 0.003652 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.148299 B = 7666.092026 C = 8389.657410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 H 0.089 0.911 4 C 0.038 3.962 5 O -0.383 6.383 6 C 0.064 3.936 7 H 0.106 0.894 8 C 0.542 3.458 9 O -0.579 6.579 10 N -0.638 5.638 11 C 0.127 3.873 12 C -0.100 4.100 13 C 0.125 3.875 14 C -0.104 4.104 15 C 0.191 3.809 16 N -0.625 5.625 17 C -0.235 4.235 18 H 0.087 0.913 19 C -0.066 4.066 20 N -0.953 5.953 21 Si 0.974 3.026 22 H -0.285 1.285 23 H -0.301 1.301 24 H -0.269 1.269 25 C 0.153 3.847 26 C -0.134 4.134 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.015 0.985 39 H 0.002 0.998 40 H 0.244 0.756 41 H 0.032 0.968 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 15.356 -10.357 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.138 4.138 3 H 0.108 0.892 4 C -0.038 4.038 5 O -0.302 6.302 6 C 0.003 3.997 7 H 0.123 0.877 8 C 0.332 3.668 9 O -0.459 6.459 10 N -0.373 5.373 11 C 0.005 3.995 12 C -0.102 4.102 13 C 0.003 3.997 14 C -0.142 4.142 15 C 0.066 3.934 16 N -0.352 5.352 17 C -0.364 4.364 18 H 0.105 0.895 19 C -0.259 4.259 20 N -0.602 5.602 21 Si 0.803 3.197 22 H -0.212 1.212 23 H -0.228 1.228 24 H -0.194 1.194 25 C 0.027 3.973 26 C -0.172 4.172 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.033 0.967 39 H 0.021 0.979 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.980 15.365 -10.872 18.848 hybrid contribution -0.528 -0.857 0.811 1.293 sum -1.509 14.508 -10.060 17.719 Atomic orbital electron populations 1.21814 0.92042 1.02766 1.03171 1.22523 0.98005 1.00206 0.93101 0.89226 1.23867 0.87072 0.95550 0.97281 1.89227 1.37316 1.74457 1.29160 1.22835 0.92453 1.00192 0.84206 0.87665 1.20245 0.90548 0.75506 0.80508 1.90680 1.29938 1.54068 1.71226 1.49730 1.12926 1.64254 1.10387 1.23007 0.90780 0.97003 0.88703 1.22001 0.97309 0.94567 0.96282 1.22843 0.94007 0.96971 0.85887 1.22273 1.00048 0.93379 0.98526 1.20907 0.95310 0.91677 0.85543 1.44826 1.52261 1.22311 1.15767 1.19469 1.18523 1.04347 0.94046 0.89496 1.25580 1.02104 0.97431 1.00757 1.70182 1.44786 1.12945 1.32303 0.85140 0.78777 0.76280 0.79509 1.21229 1.22753 1.19395 1.21296 0.93966 0.90279 0.91728 1.23004 0.99941 0.95330 0.98907 0.91432 0.92049 0.91047 0.90460 0.87554 0.86854 0.89825 0.90734 0.87098 0.91144 0.91126 0.96680 0.97935 0.94636 0.94976 0.92112 0.90972 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.97 71.98 0.65 -0.79 16 2 C -0.12 -1.71 3.72 -9.78 -0.04 -1.74 16 3 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.04 0.66 7.18 72.49 0.52 1.18 16 5 O -0.38 -10.58 10.91 -130.61 -1.42 -12.00 16 6 C 0.06 1.55 3.54 30.35 0.11 1.66 16 7 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 8 C 0.54 16.75 7.33 87.66 0.64 17.40 16 9 O -0.58 -23.24 17.32 15.34 0.27 -22.97 16 10 N -0.64 -17.08 3.68 -859.84 -3.17 -20.25 16 11 C 0.13 3.09 7.54 83.76 0.63 3.72 16 12 C -0.10 -2.92 1.06 -52.62 -0.06 -2.98 16 13 C 0.13 3.20 8.03 83.67 0.67 3.87 16 14 C -0.10 -3.61 6.41 31.32 0.20 -3.41 16 15 C 0.19 8.92 5.39 86.81 0.47 9.39 16 16 N -0.63 -29.56 3.41 -693.42 -2.36 -31.92 16 17 C -0.23 -12.33 10.28 84.03 0.86 -11.47 16 18 H 0.09 4.30 7.83 -2.91 -0.02 4.27 16 19 C -0.07 -3.60 5.49 84.86 0.47 -3.13 16 20 N -0.95 -55.64 10.30 21.65 0.22 -55.42 16 21 Si 0.97 44.05 29.55 68.60 2.03 46.07 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 C 0.15 5.32 6.70 86.23 0.58 5.90 16 26 C -0.13 -2.35 6.01 31.61 0.19 -2.16 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.63 8.08 -2.39 -0.02 0.61 16 29 H 0.07 0.57 8.14 -2.38 -0.02 0.56 16 30 H 0.08 1.10 7.83 -2.38 -0.02 1.08 16 31 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.11 2.27 8.06 -2.39 -0.02 2.25 16 33 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.07 2.00 8.13 -2.38 -0.02 1.98 16 35 H 0.11 2.32 8.14 -2.39 -0.02 2.31 16 36 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.01 0.79 7.38 -2.39 -0.02 0.77 16 39 H 0.00 0.13 7.49 -2.39 -0.02 0.11 16 40 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.92 8.00 -2.39 -0.02 1.90 16 43 H 0.07 1.37 7.86 -2.39 -0.02 1.35 16 44 H 0.11 1.50 7.73 -2.39 -0.02 1.48 16 Total: -1.00 -72.17 352.21 2.42 -69.75 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.96 Total: 9.31 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 5.89 Total: 17.43 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -5.31 Total: -107.59 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -1.16 Total: -34.98 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.17 2.42 -69.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688118060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.155 kcal (2) G-P(sol) polarization free energy of solvation -72.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds