Wall clock time and date at job start Tue Mar 31 2020 07:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46610 * 2 1 4 4 C 1.53004 * 109.46851 * 120.00010 * 2 1 3 5 5 N 1.46499 * 109.46939 * 294.99988 * 4 2 1 6 6 C 1.36932 * 119.99549 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00354 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.00011 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00154 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99635 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 269.99668 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99848 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99841 * 10 8 6 14 14 C 1.53003 * 109.46907 * 239.99997 * 2 1 3 15 15 N 1.46493 * 109.47209 * 65.00438 * 14 2 1 16 16 C 1.34777 * 119.99878 * 180.02562 * 15 14 2 17 17 O 1.21277 * 120.00385 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99915 * 179.97438 * 16 15 14 19 19 H 1.08999 * 110.66930 * 61.75373 * 18 16 15 20 20 C 1.55011 * 110.74629 * 298.53719 * 18 16 15 21 21 C 1.55811 * 102.78974 * 241.67637 * 20 18 16 22 22 H 1.09002 * 115.38878 * 158.10992 * 21 20 18 23 23 O 1.46534 * 101.24491 * 32.42176 * 21 20 18 24 24 C 1.46541 * 99.68124 * 305.83854 * 23 21 20 25 25 H 1.09000 * 116.26058 * 179.97438 * 24 23 21 26 26 C 1.58367 * 101.08915 * 306.46194 * 24 23 21 27 27 H 1.09004 * 119.08999 * 171.88830 * 26 24 23 28 28 C 1.52995 * 116.85137 * 329.91729 * 26 24 23 29 29 C 1.53002 * 60.86967 * 89.17628 * 28 26 24 30 30 H 1.08998 * 120.88245 * 112.79878 * 29 28 26 31 31 H 1.08998 * 109.47354 * 299.99708 * 1 2 3 32 32 H 1.09000 * 109.47462 * 60.00256 * 1 2 3 33 33 H 1.09007 * 109.46794 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.46680 * 175.00297 * 4 2 1 35 35 H 1.08994 * 109.47425 * 55.00226 * 4 2 1 36 36 H 0.96993 * 120.00302 * 0.02562 * 5 4 2 37 37 H 0.96998 * 119.99442 * 179.97438 * 9 8 6 38 38 H 1.09007 * 109.46455 * 184.99949 * 14 2 1 39 39 H 1.09002 * 109.47326 * 304.99587 * 14 2 1 40 40 H 0.97005 * 120.00215 * 359.97438 * 15 14 2 41 41 H 1.08997 * 110.74602 * 0.02562 * 20 18 16 42 42 H 1.08997 * 110.74599 * 123.34900 * 20 18 16 43 43 H 1.09000 * 117.41447 * 341.43349 * 28 26 24 44 44 H 1.09003 * 117.41034 * 196.91235 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.0018 -0.4203 3.6855 7 1 2.5636 -1.3372 3.7864 8 6 1.6351 0.2969 4.8160 9 7 1.9714 -0.1408 6.0109 10 14 0.6641 1.8831 4.6415 11 1 1.6029 3.0278 4.5239 12 1 -0.1973 2.0703 5.8365 13 1 -0.1851 1.8125 3.4253 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0353 -2.4424 16 6 1.9956 -0.4137 -3.6659 17 8 2.6255 -1.4438 -3.7793 18 6 1.5965 0.3644 -4.8933 19 1 2.0467 1.3570 -4.8828 20 6 0.0534 0.4623 -5.0037 21 6 -0.2432 -0.2678 -6.3479 22 1 -1.2585 -0.6487 -6.4587 23 8 0.8190 -1.2771 -6.3653 24 6 1.9865 -0.4093 -6.1884 25 1 2.9566 -0.9056 -6.1616 26 6 1.7720 0.6326 -7.3615 27 1 2.4200 1.5074 -7.4184 28 6 1.0494 0.1268 -8.6116 29 6 0.2274 0.7140 -7.4625 30 1 -0.3132 1.6526 -7.5840 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1264 -0.7994 1.2056 35 1 1.6054 -1.7198 1.2952 36 1 1.1482 0.8590 2.3518 37 1 1.7154 0.3606 6.8008 38 1 3.1264 -0.7994 -1.2056 39 1 1.6054 -1.7199 -1.2952 40 1 1.1484 0.8591 -2.3518 41 1 -0.4266 -0.0513 -4.1708 42 1 -0.2649 1.5036 -5.0514 43 1 1.0025 -0.9518 -8.7623 44 1 1.1402 0.7231 -9.5195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698756594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:04 Heat of formation + Delta-G solvation = -23.344743 kcal Electronic energy + Delta-G solvation = -23631.130833 eV Core-core repulsion = 20164.225179 eV Total energy + Delta-G solvation = -3466.905654 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.88854 -39.46274 -36.98397 -34.73427 -34.52982 -32.94835 -32.07184 -30.48709 -29.74152 -26.82116 -25.83152 -24.26999 -23.11559 -21.92023 -20.86150 -20.68683 -20.36136 -19.75815 -17.82821 -17.42529 -16.96364 -16.65763 -15.94307 -15.31067 -14.99820 -14.59007 -14.41193 -14.28538 -13.79954 -13.58898 -13.19104 -13.02123 -12.85140 -12.66265 -12.50098 -12.27505 -12.09687 -11.90276 -11.67559 -11.57530 -11.46797 -11.06073 -10.78084 -10.69887 -10.63746 -10.61545 -10.38187 -10.15793 -10.11721 -9.79122 -9.59186 -9.10873 -8.91873 -7.25029 -5.78077 -3.13787 2.51810 2.89647 3.16571 3.33723 3.36187 3.42116 3.43173 4.04130 4.07024 4.17706 4.34154 4.35912 4.56778 4.60035 4.72035 4.75322 4.85342 4.96883 5.06865 5.09777 5.15486 5.21377 5.34796 5.38424 5.41446 5.52531 5.56575 5.64191 5.66556 5.72031 5.80646 5.85771 5.88317 6.06622 6.11761 6.21468 6.38374 6.43451 6.63903 6.73315 7.38764 7.98307 8.11898 8.40827 9.19604 9.91615 10.11350 11.40396 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039902 B = 0.002607 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.543410 B =10738.692212 C =11094.549066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.075 0.925 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.127 3.873 15 N -0.725 5.725 16 C 0.522 3.478 17 O -0.534 6.534 18 C -0.137 4.137 19 H 0.111 0.889 20 C -0.135 4.135 21 C 0.089 3.911 22 H 0.133 0.867 23 O -0.360 6.360 24 C 0.119 3.881 25 H 0.142 0.858 26 C -0.199 4.199 27 H 0.125 0.875 28 C -0.133 4.133 29 C -0.198 4.198 30 H 0.123 0.877 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.030 0.970 35 H 0.031 0.969 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.399 0.601 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.785 5.456 -30.081 30.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.377 5.377 16 C 0.307 3.693 17 O -0.410 6.410 18 C -0.159 4.159 19 H 0.129 0.871 20 C -0.173 4.173 21 C 0.031 3.969 22 H 0.150 0.850 23 O -0.278 6.278 24 C 0.061 3.939 25 H 0.159 0.841 26 C -0.217 4.217 27 H 0.142 0.858 28 C -0.170 4.170 29 C -0.216 4.216 30 H 0.141 0.859 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.233 0.767 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.119 0.881 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.239 4.292 -29.958 30.560 hybrid contribution -0.942 2.006 0.234 2.228 sum -5.181 6.298 -29.724 30.823 Atomic orbital electron populations 1.21816 0.94789 1.02282 1.01179 1.21603 0.96612 1.00501 0.94617 0.90637 1.20555 0.97228 0.94248 0.84285 1.42681 1.67649 1.27321 1.02367 1.19069 1.29328 1.07201 0.81752 0.89165 1.24685 1.00810 0.98670 0.95112 1.69703 1.51317 1.40233 0.96932 0.86537 0.80225 0.84825 0.76824 1.21115 1.21721 1.20409 1.21401 1.00299 0.95327 0.82681 1.46043 1.57909 1.27853 1.05913 1.20238 0.79296 0.85539 0.84217 1.90719 1.39657 1.24058 1.86559 1.22960 0.97866 1.00916 0.94160 0.87116 1.23193 0.93351 1.02150 0.98619 1.24212 0.93687 0.86692 0.92340 0.84974 1.90172 1.16051 1.28233 1.93388 1.24481 0.92076 0.87824 0.89555 0.84055 1.24834 0.95739 1.02503 0.98656 0.85758 1.22809 1.00324 1.02228 0.91651 1.24318 0.94600 1.02239 1.00474 0.85868 0.91786 0.93724 0.92365 0.95209 0.95136 0.80654 0.93050 0.91153 0.91156 0.76680 0.89814 0.89411 0.88101 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.94 37.16 0.33 -1.57 16 2 C -0.11 -1.61 2.46 -90.61 -0.22 -1.83 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 5 N -0.75 -17.63 5.13 -59.91 -0.31 -17.94 16 6 C -0.24 -6.91 10.47 -15.06 -0.16 -7.06 16 7 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 8 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 9 N -0.93 -29.41 13.97 55.49 0.78 -28.63 16 10 Si 0.89 21.87 27.73 -169.99 -4.71 17.16 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 14 C 0.13 1.64 5.06 -4.04 -0.02 1.62 16 15 N -0.73 -7.77 5.20 -60.29 -0.31 -8.08 16 16 C 0.52 6.24 7.01 -10.98 -0.08 6.17 16 17 O -0.53 -8.67 15.89 5.56 0.09 -8.58 16 18 C -0.14 -1.16 2.88 -89.20 -0.26 -1.42 16 19 H 0.11 0.70 8.04 -51.93 -0.42 0.28 16 20 C -0.14 -0.94 6.11 -24.17 -0.15 -1.08 16 21 C 0.09 0.68 5.61 -23.73 -0.13 0.55 16 22 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 23 O -0.36 -4.11 10.82 -35.23 -0.38 -4.49 16 24 C 0.12 1.13 4.70 -22.27 -0.10 1.02 16 25 H 0.14 1.46 7.74 -51.93 -0.40 1.06 16 26 C -0.20 -1.39 6.73 -86.60 -0.58 -1.97 16 27 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 28 C -0.13 -0.89 9.81 -26.73 -0.26 -1.15 16 29 C -0.20 -1.26 6.62 -88.06 -0.58 -1.84 16 30 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.98 7.18 -51.93 -0.37 0.61 16 32 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.36 8.12 4.71 -40.82 -0.19 7.93 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 38 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.40 3.29 7.65 -40.82 -0.31 2.97 16 41 H 0.08 0.64 7.73 -51.93 -0.40 0.24 16 42 H 0.09 0.41 8.02 -51.93 -0.42 0.00 16 43 H 0.10 0.80 7.67 -51.93 -0.40 0.40 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -34.57 350.74 -9.01 -43.58 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.10 Total: 7.20 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.34 Total: -5.50 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.15 Total: -54.65 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.29 Total: -13.07 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.57 -9.01 -43.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698756594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.236 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds