Wall clock time and date at job start Tue Mar 31 2020 07:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46610 * 2 1 4 4 C 1.53004 * 109.46851 * 120.00010 * 2 1 3 5 5 N 1.46499 * 109.46939 * 294.99988 * 4 2 1 6 6 C 1.36932 * 119.99549 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00354 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.00011 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00154 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99635 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 269.99668 * 10 8 6 12 12 H 1.48503 * 109.47261 * 149.99848 * 10 8 6 13 13 H 1.48500 * 109.47454 * 29.99841 * 10 8 6 14 14 C 1.53003 * 109.46907 * 239.99997 * 2 1 3 15 15 N 1.46493 * 109.47209 * 65.00438 * 14 2 1 16 16 C 1.34777 * 119.99878 * 180.02562 * 15 14 2 17 17 O 1.21277 * 120.00385 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99915 * 179.97438 * 16 15 14 19 19 H 1.08999 * 110.66930 * 61.75373 * 18 16 15 20 20 C 1.55011 * 110.74629 * 298.53719 * 18 16 15 21 21 C 1.55811 * 102.78974 * 241.67637 * 20 18 16 22 22 H 1.09002 * 115.38878 * 158.10992 * 21 20 18 23 23 O 1.46534 * 101.24491 * 32.42176 * 21 20 18 24 24 C 1.46541 * 99.68124 * 305.83854 * 23 21 20 25 25 H 1.09000 * 116.26058 * 179.97438 * 24 23 21 26 26 C 1.58367 * 101.08915 * 306.46194 * 24 23 21 27 27 H 1.09004 * 119.08999 * 171.88830 * 26 24 23 28 28 C 1.52995 * 116.85137 * 329.91729 * 26 24 23 29 29 C 1.53002 * 60.86967 * 89.17628 * 28 26 24 30 30 H 1.08998 * 120.88245 * 112.79878 * 29 28 26 31 31 H 1.08998 * 109.47354 * 299.99708 * 1 2 3 32 32 H 1.09000 * 109.47462 * 60.00256 * 1 2 3 33 33 H 1.09007 * 109.46794 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.46680 * 175.00297 * 4 2 1 35 35 H 1.08994 * 109.47425 * 55.00226 * 4 2 1 36 36 H 0.96993 * 120.00302 * 0.02562 * 5 4 2 37 37 H 0.96998 * 119.99442 * 179.97438 * 9 8 6 38 38 H 1.09007 * 109.46455 * 184.99949 * 14 2 1 39 39 H 1.09002 * 109.47326 * 304.99587 * 14 2 1 40 40 H 0.97005 * 120.00215 * 359.97438 * 15 14 2 41 41 H 1.08997 * 110.74602 * 0.02562 * 20 18 16 42 42 H 1.08997 * 110.74599 * 123.34900 * 20 18 16 43 43 H 1.09000 * 117.41447 * 341.43349 * 28 26 24 44 44 H 1.09003 * 117.41034 * 196.91235 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.0018 -0.4203 3.6855 7 1 2.5636 -1.3372 3.7864 8 6 1.6351 0.2969 4.8160 9 7 1.9714 -0.1408 6.0109 10 14 0.6641 1.8831 4.6415 11 1 1.6029 3.0278 4.5239 12 1 -0.1973 2.0703 5.8365 13 1 -0.1851 1.8125 3.4253 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0353 -2.4424 16 6 1.9956 -0.4137 -3.6659 17 8 2.6255 -1.4438 -3.7793 18 6 1.5965 0.3644 -4.8933 19 1 2.0467 1.3570 -4.8828 20 6 0.0534 0.4623 -5.0037 21 6 -0.2432 -0.2678 -6.3479 22 1 -1.2585 -0.6487 -6.4587 23 8 0.8190 -1.2771 -6.3653 24 6 1.9865 -0.4093 -6.1884 25 1 2.9566 -0.9056 -6.1616 26 6 1.7720 0.6326 -7.3615 27 1 2.4200 1.5074 -7.4184 28 6 1.0494 0.1268 -8.6116 29 6 0.2274 0.7140 -7.4625 30 1 -0.3132 1.6526 -7.5840 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1264 -0.7994 1.2056 35 1 1.6054 -1.7198 1.2952 36 1 1.1482 0.8590 2.3518 37 1 1.7154 0.3606 6.8008 38 1 3.1264 -0.7994 -1.2056 39 1 1.6054 -1.7199 -1.2952 40 1 1.1484 0.8591 -2.3518 41 1 -0.4266 -0.0513 -4.1708 42 1 -0.2649 1.5036 -5.0514 43 1 1.0025 -0.9518 -8.7623 44 1 1.1402 0.7231 -9.5195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698756594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:03 Heat of formation + Delta-G solvation = -48.312721 kcal Electronic energy + Delta-G solvation = -23632.213526 eV Core-core repulsion = 20164.225179 eV Total energy + Delta-G solvation = -3467.988347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.51830 -40.41793 -38.32768 -36.06052 -35.31088 -34.29631 -33.23494 -32.16427 -30.33764 -27.93565 -27.36395 -25.13549 -24.07190 -23.39155 -21.67966 -21.43932 -21.19576 -20.70792 -19.60632 -18.32474 -17.70605 -17.48692 -16.91016 -16.52972 -16.31921 -15.88189 -15.50051 -15.33246 -15.11132 -14.89572 -14.37561 -14.09101 -13.91919 -13.67074 -13.60050 -13.38369 -13.21447 -12.89210 -12.80331 -12.44215 -12.26469 -12.19224 -12.11745 -12.08443 -12.00913 -11.76419 -11.69544 -11.26815 -11.02144 -10.99191 -10.71983 -10.61419 -10.11590 -9.31377 -8.03240 -5.37768 1.37036 1.42717 1.50028 1.60824 2.06657 2.48670 2.65194 2.79190 3.27693 3.38873 3.48493 3.54602 3.61571 3.81348 3.86263 3.91881 3.93592 4.04970 4.12096 4.18438 4.23662 4.39956 4.50808 4.60419 4.66899 4.67494 4.76866 4.83906 4.89025 4.91570 4.93999 4.97636 5.00699 5.08292 5.15165 5.27181 5.32350 5.37190 5.46431 5.55445 5.74472 6.20179 6.53627 7.07100 7.23811 7.81534 8.03105 9.18399 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039902 B = 0.002607 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.543410 B =10738.692212 C =11094.549066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.091 0.909 4 C 0.158 3.842 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.051 0.949 8 C -0.068 4.068 9 N -0.986 5.986 10 Si 0.961 3.039 11 H -0.276 1.276 12 H -0.297 1.297 13 H -0.245 1.245 14 C 0.136 3.864 15 N -0.711 5.711 16 C 0.517 3.483 17 O -0.585 6.585 18 C -0.128 4.128 19 H 0.142 0.858 20 C -0.127 4.127 21 C 0.076 3.924 22 H 0.142 0.858 23 O -0.400 6.400 24 C 0.103 3.897 25 H 0.118 0.882 26 C -0.196 4.196 27 H 0.145 0.855 28 C -0.142 4.142 29 C -0.182 4.182 30 H 0.151 0.849 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.369 0.631 37 H 0.258 0.742 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.416 0.584 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.731 8.999 -32.516 34.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.109 0.891 4 C 0.032 3.968 5 N -0.399 5.399 6 C -0.370 4.370 7 H 0.069 0.931 8 C -0.259 4.259 9 N -0.636 5.636 10 Si 0.787 3.213 11 H -0.202 1.202 12 H -0.223 1.223 13 H -0.169 1.169 14 C 0.011 3.989 15 N -0.364 5.364 16 C 0.305 3.695 17 O -0.465 6.465 18 C -0.149 4.149 19 H 0.160 0.840 20 C -0.165 4.165 21 C 0.019 3.981 22 H 0.160 0.840 23 O -0.320 6.320 24 C 0.045 3.955 25 H 0.136 0.864 26 C -0.214 4.214 27 H 0.163 0.837 28 C -0.179 4.179 29 C -0.200 4.200 30 H 0.168 0.832 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.203 0.797 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.253 0.747 41 H 0.094 0.906 42 H 0.141 0.859 43 H 0.097 0.903 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.208 7.860 -32.450 33.960 hybrid contribution -0.262 0.723 0.963 1.233 sum -6.470 8.584 -31.487 33.271 Atomic orbital electron populations 1.21804 0.93596 1.02206 1.02221 1.21385 0.97388 1.00466 0.92292 0.89124 1.20706 0.96922 0.94165 0.85051 1.42606 1.67601 1.27892 1.01832 1.19028 1.28110 1.05771 0.84085 0.93062 1.25617 1.02671 1.03145 0.94506 1.69907 1.53364 1.42322 0.97996 0.85330 0.78783 0.79408 0.77769 1.20194 1.22338 1.16891 1.21104 0.99496 0.94987 0.83274 1.45854 1.57580 1.28069 1.04849 1.20957 0.78170 0.85062 0.85315 1.90704 1.42002 1.26500 1.87277 1.22979 0.99344 1.01234 0.91349 0.84046 1.23224 0.91619 1.03961 0.97701 1.24522 0.93412 0.86512 0.93637 0.84036 1.90140 1.17623 1.30471 1.93734 1.24510 0.90940 0.88394 0.91631 0.86417 1.24793 0.96779 1.02136 0.97739 0.83712 1.22883 1.00970 1.01419 0.92642 1.24397 0.93912 1.02478 0.99249 0.83178 0.93325 0.89989 0.93116 0.95899 0.96019 0.79693 0.93293 0.92302 0.92455 0.74679 0.90563 0.85929 0.90288 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.94 71.98 0.64 -2.67 16 2 C -0.10 -2.50 2.46 -10.79 -0.03 -2.53 16 3 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.16 5.91 5.65 86.38 0.49 6.40 16 5 N -0.75 -34.57 5.13 -343.44 -1.76 -36.33 16 6 C -0.24 -13.78 10.47 84.04 0.88 -12.90 16 7 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 8 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 9 N -0.99 -63.67 13.97 21.65 0.30 -63.37 16 10 Si 0.96 44.48 27.73 68.60 1.90 46.38 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 13 H -0.24 -9.89 6.52 99.48 0.65 -9.24 16 14 C 0.14 3.37 5.06 86.38 0.44 3.81 16 15 N -0.71 -13.50 5.20 -463.06 -2.41 -15.91 16 16 C 0.52 11.74 7.01 87.66 0.61 12.35 16 17 O -0.59 -19.41 15.89 -3.02 -0.05 -19.46 16 18 C -0.13 -1.84 2.88 -9.88 -0.03 -1.86 16 19 H 0.14 1.17 8.04 -2.39 -0.02 1.15 16 20 C -0.13 -1.30 6.11 32.25 0.20 -1.11 16 21 C 0.08 1.00 5.61 32.54 0.18 1.19 16 22 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 23 O -0.40 -9.10 10.82 -148.98 -1.61 -10.71 16 24 C 0.10 1.90 4.70 33.49 0.16 2.05 16 25 H 0.12 2.60 7.74 -2.39 -0.02 2.59 16 26 C -0.20 -2.25 6.73 -8.19 -0.06 -2.30 16 27 H 0.15 1.06 8.14 -2.38 -0.02 1.04 16 28 C -0.14 -1.63 9.81 30.59 0.30 -1.33 16 29 C -0.18 -1.70 6.62 -9.13 -0.06 -1.76 16 30 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 1.32 7.18 -2.39 -0.02 1.30 16 32 H 0.08 1.32 7.18 -2.39 -0.02 1.30 16 33 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.37 15.65 4.71 -92.71 -0.44 15.21 16 37 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.42 5.10 7.65 -92.70 -0.71 4.39 16 41 H 0.08 0.92 7.73 -2.39 -0.02 0.90 16 42 H 0.12 0.44 8.02 -2.39 -0.02 0.42 16 43 H 0.08 1.25 7.67 -2.39 -0.02 1.23 16 44 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -79.12 350.74 0.37 -78.74 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.20 Total: 24.87 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 4.20 Total: -4.23 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -3.87 Total: -115.60 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.66 Total: -30.17 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.90 Total: 46.38 kcal Total: -79.12 0.37 -78.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698756594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.429 kcal (2) G-P(sol) polarization free energy of solvation -79.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds