Wall clock time and date at job start Tue Mar 31 2020 07:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47089 * 2 1 4 4 C 1.52999 * 109.46817 * 239.99993 * 2 1 3 5 5 N 1.46503 * 109.47180 * 65.00239 * 4 2 1 6 6 C 1.36935 * 119.99772 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00263 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99936 * 179.97438 * 6 5 4 9 9 N 1.31615 * 119.99915 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00132 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47121 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47362 * 120.00284 * 10 8 6 13 13 H 1.48507 * 109.46904 * 240.00034 * 10 8 6 14 14 C 1.52999 * 109.47116 * 119.99937 * 2 1 3 15 15 N 1.46497 * 109.46992 * 294.99847 * 14 2 1 16 16 C 1.34777 * 119.99525 * 179.97438 * 15 14 2 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 14 19 19 H 1.08999 * 110.66895 * 62.03935 * 18 16 15 20 20 C 1.54999 * 110.74838 * 298.82276 * 18 16 15 21 21 C 1.55821 * 102.78881 * 241.67449 * 20 18 16 22 22 H 1.09004 * 115.38886 * 158.10963 * 21 20 18 23 23 O 1.46534 * 101.24314 * 32.42081 * 21 20 18 24 24 C 1.46536 * 99.68228 * 305.83748 * 23 21 20 25 25 H 1.09002 * 116.26216 * 179.97438 * 24 23 21 26 26 C 1.58369 * 101.09318 * 306.46569 * 24 23 21 27 27 H 1.08996 * 119.09655 * 171.88911 * 26 24 23 28 28 C 1.53008 * 116.84770 * 329.91686 * 26 24 23 29 29 C 1.53001 * 60.86565 * 89.17246 * 28 26 24 30 30 H 1.09003 * 120.87555 * 112.80591 * 29 28 26 31 31 H 1.08999 * 109.47089 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46783 * 300.00261 * 1 2 3 33 33 H 1.09001 * 109.46899 * 59.99692 * 1 2 3 34 34 H 1.08999 * 109.46816 * 184.99911 * 4 2 1 35 35 H 1.09001 * 109.47584 * 304.99852 * 4 2 1 36 36 H 0.96993 * 119.99976 * 359.97438 * 5 4 2 37 37 H 0.97004 * 120.00367 * 179.97438 * 9 8 6 38 38 H 1.08995 * 109.46838 * 174.99735 * 14 2 1 39 39 H 1.09001 * 109.46617 * 55.00070 * 14 2 1 40 40 H 0.97000 * 120.00580 * 0.02562 * 15 14 2 41 41 H 1.08999 * 110.75324 * 0.02562 * 20 18 16 42 42 H 1.09000 * 110.75265 * 123.35130 * 20 18 16 43 43 H 1.08998 * 117.40673 * 341.43638 * 28 26 24 44 44 H 1.08992 * 117.41049 * 196.91718 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 2.0019 -0.4203 -3.6855 7 1 2.5629 -1.3376 -3.7864 8 6 1.6342 0.2964 -4.8161 9 7 0.9493 1.4135 -4.6932 10 14 2.1104 -0.3255 -6.5120 11 1 2.8713 -1.5938 -6.3785 12 1 0.8836 -0.5657 -7.3136 13 1 2.9553 0.6889 -7.1920 14 6 2.0400 -0.7212 1.2492 15 7 1.6525 0.0354 2.4423 16 6 1.9957 -0.4136 3.6659 17 8 2.6257 -1.4438 3.7792 18 6 1.6024 0.3679 4.8929 19 1 0.5175 0.4325 4.9766 20 6 2.2364 1.7821 4.8698 21 6 3.1382 1.7766 6.1405 22 1 3.9521 2.5017 6.1392 23 8 3.5419 0.3691 6.1983 24 6 2.2220 -0.2670 6.1739 25 1 2.2110 -1.3564 6.2074 26 6 1.5056 0.4715 7.3778 27 1 0.4399 0.3102 7.5398 28 6 2.3971 0.9416 8.5290 29 6 2.1543 1.8789 7.3444 30 1 1.5853 2.8005 7.4677 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 3.1263 -0.7995 -1.2056 35 1 1.6054 -1.7198 -1.2952 36 1 1.1483 0.8591 -2.3518 37 1 0.6927 1.9146 -5.4832 38 1 3.1263 -0.7995 1.2055 39 1 1.6054 -1.7198 1.2951 40 1 1.1483 0.8591 2.3518 41 1 2.8365 1.9217 3.9706 42 1 1.4678 2.5513 4.9452 43 1 3.3846 0.4885 8.6161 44 1 1.9101 1.1885 9.4723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698756595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:06 Heat of formation + Delta-G solvation = -27.867854 kcal Electronic energy + Delta-G solvation = -23530.665388 eV Core-core repulsion = 20063.563597 eV Total energy + Delta-G solvation = -3467.101791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.83786 -39.38943 -36.82136 -34.68902 -34.39022 -32.90352 -32.01147 -30.01464 -29.67606 -26.67848 -25.55618 -24.23787 -23.12866 -22.22609 -20.81889 -20.61908 -20.23881 -19.60817 -17.65615 -17.15109 -16.85892 -16.52011 -15.82318 -15.43956 -14.76180 -14.62585 -14.29450 -14.19059 -13.66900 -13.56643 -13.00286 -12.97117 -12.81659 -12.66497 -12.36339 -12.08881 -12.07402 -11.81907 -11.62678 -11.52255 -11.07418 -10.92703 -10.72398 -10.64332 -10.58101 -10.42325 -10.33404 -10.07752 -10.03769 -9.78364 -9.63605 -9.02976 -8.88925 -6.93080 -5.78075 -3.06319 2.57962 2.96050 3.21420 3.43041 3.47811 3.49521 3.51238 4.09669 4.11569 4.22442 4.39479 4.40589 4.58655 4.65254 4.77279 4.81305 4.97350 5.08038 5.14328 5.20165 5.22379 5.37412 5.38645 5.44256 5.46714 5.57150 5.61511 5.71439 5.80311 5.84585 5.95183 5.99592 6.10156 6.16633 6.23154 6.37818 6.48343 6.63765 6.76509 6.85834 7.46847 7.70514 8.18664 8.41127 9.52514 10.09712 10.44569 11.45036 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044136 B = 0.002405 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.250631 B =11640.791044 C =11779.889709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.935 5.935 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.126 3.874 15 N -0.724 5.724 16 C 0.521 3.479 17 O -0.536 6.536 18 C -0.137 4.137 19 H 0.111 0.889 20 C -0.135 4.135 21 C 0.089 3.911 22 H 0.133 0.867 23 O -0.360 6.360 24 C 0.119 3.881 25 H 0.142 0.858 26 C -0.199 4.199 27 H 0.124 0.876 28 C -0.134 4.134 29 C -0.198 4.198 30 H 0.124 0.876 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.022 0.978 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 2.664 26.749 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.376 5.376 16 C 0.307 3.693 17 O -0.412 6.412 18 C -0.159 4.159 19 H 0.129 0.871 20 C -0.173 4.173 21 C 0.031 3.969 22 H 0.150 0.850 23 O -0.279 6.279 24 C 0.061 3.939 25 H 0.159 0.841 26 C -0.218 4.218 27 H 0.142 0.858 28 C -0.170 4.170 29 C -0.216 4.216 30 H 0.141 0.859 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.119 0.881 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.599 1.691 26.664 26.724 hybrid contribution -0.583 0.602 -1.109 1.390 sum -1.182 2.293 25.555 25.685 Atomic orbital electron populations 1.21789 0.94691 1.01921 1.01431 1.21549 0.96677 1.00472 0.94220 0.90582 1.20578 0.96638 0.94209 0.85373 1.42346 1.66897 1.27699 1.00608 1.19290 1.28504 1.05419 0.83640 0.91088 1.24741 1.01055 0.97443 0.97885 1.69664 1.43623 1.16700 1.28374 0.86104 0.77587 0.77851 0.84594 1.20530 1.21880 1.21880 1.21420 1.00164 0.95246 0.82900 1.46050 1.57714 1.27909 1.05895 1.20239 0.79296 0.85489 0.84297 1.90713 1.39354 1.24553 1.86610 1.22955 1.02521 0.96197 0.94210 0.87138 1.23198 0.99698 0.95140 0.99305 1.24218 0.95242 0.85338 0.92133 0.84960 1.90169 1.25932 1.17405 1.94360 1.24478 0.81042 0.98690 0.89727 0.84100 1.24836 0.99658 0.97818 0.99445 0.85771 1.22807 1.01436 1.00648 0.92159 1.24321 1.03393 0.94960 0.98924 0.85852 0.92824 0.93977 0.91151 0.96108 0.95988 0.78229 0.93589 0.91369 0.91369 0.76600 0.89751 0.89370 0.88121 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.16 0.33 -1.71 16 2 C -0.11 -1.68 2.46 -90.62 -0.22 -1.90 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.19 5.65 -4.04 -0.02 3.16 16 5 N -0.73 -18.29 5.33 -59.91 -0.32 -18.61 16 6 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 7 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 10 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 C 0.13 1.75 5.06 -4.04 -0.02 1.73 16 15 N -0.72 -8.33 5.19 -60.30 -0.31 -8.64 16 16 C 0.52 6.56 7.02 -10.98 -0.08 6.48 16 17 O -0.54 -8.98 15.89 5.55 0.09 -8.89 16 18 C -0.14 -1.23 2.88 -89.21 -0.26 -1.49 16 19 H 0.11 0.75 8.04 -51.93 -0.42 0.33 16 20 C -0.14 -1.02 6.10 -24.17 -0.15 -1.17 16 21 C 0.09 0.73 5.61 -23.72 -0.13 0.60 16 22 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 23 O -0.36 -4.28 10.82 -35.23 -0.38 -4.66 16 24 C 0.12 1.18 4.70 -22.26 -0.10 1.07 16 25 H 0.14 1.51 7.74 -51.93 -0.40 1.11 16 26 C -0.20 -1.46 6.73 -86.60 -0.58 -2.04 16 27 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 28 C -0.13 -0.93 9.81 -26.73 -0.26 -1.20 16 29 C -0.20 -1.34 6.62 -88.06 -0.58 -1.92 16 30 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 33 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 9.96 6.85 -40.82 -0.28 9.68 16 37 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.40 3.65 7.64 -40.82 -0.31 3.34 16 41 H 0.08 0.71 7.73 -51.93 -0.40 0.31 16 42 H 0.09 0.47 8.02 -51.93 -0.42 0.05 16 43 H 0.10 0.83 7.67 -51.93 -0.40 0.43 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -33.63 353.84 -9.37 -43.00 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -7.15 Total: 8.15 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.33 Total: -5.75 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.09 Total: -54.64 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.29 Total: -13.55 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.63 -9.37 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698756595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.129 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds