Wall clock time and date at job start Tue Mar 31 2020 07:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47089 * 2 1 4 4 C 1.52999 * 109.46817 * 239.99993 * 2 1 3 5 5 N 1.46503 * 109.47180 * 65.00239 * 4 2 1 6 6 C 1.36935 * 119.99772 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00263 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99936 * 179.97438 * 6 5 4 9 9 N 1.31615 * 119.99915 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00132 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47121 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47362 * 120.00284 * 10 8 6 13 13 H 1.48507 * 109.46904 * 240.00034 * 10 8 6 14 14 C 1.52999 * 109.47116 * 119.99937 * 2 1 3 15 15 N 1.46497 * 109.46992 * 294.99847 * 14 2 1 16 16 C 1.34777 * 119.99525 * 179.97438 * 15 14 2 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 14 19 19 H 1.08999 * 110.66895 * 62.03935 * 18 16 15 20 20 C 1.54999 * 110.74838 * 298.82276 * 18 16 15 21 21 C 1.55821 * 102.78881 * 241.67449 * 20 18 16 22 22 H 1.09004 * 115.38886 * 158.10963 * 21 20 18 23 23 O 1.46534 * 101.24314 * 32.42081 * 21 20 18 24 24 C 1.46536 * 99.68228 * 305.83748 * 23 21 20 25 25 H 1.09002 * 116.26216 * 179.97438 * 24 23 21 26 26 C 1.58369 * 101.09318 * 306.46569 * 24 23 21 27 27 H 1.08996 * 119.09655 * 171.88911 * 26 24 23 28 28 C 1.53008 * 116.84770 * 329.91686 * 26 24 23 29 29 C 1.53001 * 60.86565 * 89.17246 * 28 26 24 30 30 H 1.09003 * 120.87555 * 112.80591 * 29 28 26 31 31 H 1.08999 * 109.47089 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46783 * 300.00261 * 1 2 3 33 33 H 1.09001 * 109.46899 * 59.99692 * 1 2 3 34 34 H 1.08999 * 109.46816 * 184.99911 * 4 2 1 35 35 H 1.09001 * 109.47584 * 304.99852 * 4 2 1 36 36 H 0.96993 * 119.99976 * 359.97438 * 5 4 2 37 37 H 0.97004 * 120.00367 * 179.97438 * 9 8 6 38 38 H 1.08995 * 109.46838 * 174.99735 * 14 2 1 39 39 H 1.09001 * 109.46617 * 55.00070 * 14 2 1 40 40 H 0.97000 * 120.00580 * 0.02562 * 15 14 2 41 41 H 1.08999 * 110.75324 * 0.02562 * 20 18 16 42 42 H 1.09000 * 110.75265 * 123.35130 * 20 18 16 43 43 H 1.08998 * 117.40673 * 341.43638 * 28 26 24 44 44 H 1.08992 * 117.41049 * 196.91718 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 2.0019 -0.4203 -3.6855 7 1 2.5629 -1.3376 -3.7864 8 6 1.6342 0.2964 -4.8161 9 7 0.9493 1.4135 -4.6932 10 14 2.1104 -0.3255 -6.5120 11 1 2.8713 -1.5938 -6.3785 12 1 0.8836 -0.5657 -7.3136 13 1 2.9553 0.6889 -7.1920 14 6 2.0400 -0.7212 1.2492 15 7 1.6525 0.0354 2.4423 16 6 1.9957 -0.4136 3.6659 17 8 2.6257 -1.4438 3.7792 18 6 1.6024 0.3679 4.8929 19 1 0.5175 0.4325 4.9766 20 6 2.2364 1.7821 4.8698 21 6 3.1382 1.7766 6.1405 22 1 3.9521 2.5017 6.1392 23 8 3.5419 0.3691 6.1983 24 6 2.2220 -0.2670 6.1739 25 1 2.2110 -1.3564 6.2074 26 6 1.5056 0.4715 7.3778 27 1 0.4399 0.3102 7.5398 28 6 2.3971 0.9416 8.5290 29 6 2.1543 1.8789 7.3444 30 1 1.5853 2.8005 7.4677 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 3.1263 -0.7995 -1.2056 35 1 1.6054 -1.7198 -1.2952 36 1 1.1483 0.8591 -2.3518 37 1 0.6927 1.9146 -5.4832 38 1 3.1263 -0.7995 1.2055 39 1 1.6054 -1.7198 1.2951 40 1 1.1483 0.8591 2.3518 41 1 2.8365 1.9217 3.9706 42 1 1.4678 2.5513 4.9452 43 1 3.3846 0.4885 8.6161 44 1 1.9101 1.1885 9.4723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698756595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:06 Heat of formation + Delta-G solvation = -51.222437 kcal Electronic energy + Delta-G solvation = -23531.678119 eV Core-core repulsion = 20063.563597 eV Total energy + Delta-G solvation = -3468.114522 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.51664 -40.40761 -38.22468 -35.98152 -35.30807 -34.26492 -33.12434 -31.75581 -30.33689 -27.85508 -27.21229 -25.24414 -24.25810 -23.46699 -21.61385 -21.41174 -21.12668 -20.65214 -19.20920 -18.29352 -17.69572 -17.43739 -16.88589 -16.59319 -16.39508 -15.60724 -15.43488 -15.41200 -15.20010 -14.79049 -14.23542 -14.21650 -13.68440 -13.64024 -13.53037 -13.37451 -12.97107 -12.86066 -12.81052 -12.42335 -12.26712 -12.19635 -12.13611 -12.07940 -12.00186 -11.71455 -11.66992 -11.26391 -11.02015 -10.96621 -10.71658 -10.61089 -10.11091 -9.00575 -7.96722 -5.24890 1.47301 1.47504 1.57869 1.60678 2.07601 2.55462 2.65663 2.79593 3.37057 3.39423 3.48861 3.61534 3.71389 3.81576 3.86735 3.94594 3.98915 4.07834 4.17273 4.23228 4.33348 4.40758 4.53352 4.61013 4.66857 4.69022 4.77428 4.84163 4.88984 4.92792 4.94170 4.97911 5.04088 5.11617 5.15108 5.32291 5.32936 5.40485 5.48188 5.49454 5.55317 6.26321 6.53667 7.23222 7.33170 8.07788 8.32683 9.26882 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044136 B = 0.002405 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.250631 B =11640.791044 C =11779.889709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 H 0.079 0.921 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.072 0.928 8 C -0.074 4.074 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.138 3.862 15 N -0.712 5.712 16 C 0.518 3.482 17 O -0.585 6.585 18 C -0.128 4.128 19 H 0.143 0.857 20 C -0.129 4.129 21 C 0.076 3.924 22 H 0.141 0.859 23 O -0.400 6.400 24 C 0.104 3.896 25 H 0.120 0.880 26 C -0.196 4.196 27 H 0.146 0.854 28 C -0.141 4.141 29 C -0.184 4.184 30 H 0.150 0.850 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.017 0.983 35 H 0.021 0.979 36 H 0.377 0.623 37 H 0.252 0.748 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.415 0.585 41 H 0.072 0.928 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 3.799 28.021 28.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.097 0.903 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.090 0.910 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.013 3.987 15 N -0.364 5.364 16 C 0.305 3.695 17 O -0.465 6.465 18 C -0.149 4.149 19 H 0.160 0.840 20 C -0.167 4.167 21 C 0.019 3.981 22 H 0.159 0.841 23 O -0.319 6.319 24 C 0.046 3.954 25 H 0.138 0.862 26 C -0.214 4.214 27 H 0.164 0.836 28 C -0.178 4.178 29 C -0.202 4.202 30 H 0.168 0.832 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.039 0.961 36 H 0.210 0.790 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.252 0.748 41 H 0.091 0.909 42 H 0.140 0.860 43 H 0.098 0.902 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.762 2.831 27.960 28.158 hybrid contribution -0.146 0.194 -1.445 1.465 sum -1.908 3.025 26.515 26.755 Atomic orbital electron populations 1.21722 0.93664 1.01935 1.01866 1.21319 0.97301 0.99983 0.92572 0.90279 1.20727 0.96424 0.94176 0.85790 1.42501 1.66759 1.27841 1.01302 1.19653 1.27780 1.05282 0.85072 0.90963 1.25540 1.01698 0.97932 1.01489 1.69802 1.45017 1.17892 1.29071 0.85086 0.77124 0.77589 0.80033 1.19337 1.21870 1.21928 1.21104 0.99212 0.95111 0.83232 1.45886 1.57454 1.28109 1.04949 1.20957 0.78181 0.85021 0.85317 1.90696 1.41572 1.26888 1.87296 1.22978 1.04253 0.96165 0.91497 0.83979 1.23225 1.00165 0.94859 0.98408 1.24512 0.96202 0.83912 0.93433 0.84113 1.90136 1.27518 1.19592 1.94697 1.24518 0.81041 0.98069 0.91767 0.86243 1.24801 1.00327 0.97732 0.98519 0.83619 1.22886 1.00683 1.00952 0.93252 1.24388 1.02510 0.95506 0.97753 0.83216 0.93038 0.90331 0.93832 0.96495 0.96146 0.79014 0.93918 0.92743 0.91936 0.74798 0.90885 0.86005 0.90248 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 8.94 71.98 0.64 -3.06 16 2 C -0.09 -2.75 2.46 -10.79 -0.03 -2.78 16 3 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 4 C 0.16 6.21 5.65 86.38 0.49 6.70 16 5 N -0.74 -37.35 5.33 -343.44 -1.83 -39.18 16 6 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 7 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 8 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 9 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 10 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 13 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 14 C 0.14 3.73 5.06 86.38 0.44 4.17 16 15 N -0.71 -15.17 5.19 -463.07 -2.40 -17.57 16 16 C 0.52 12.56 7.02 87.66 0.62 13.17 16 17 O -0.58 -20.02 15.89 -3.04 -0.05 -20.06 16 18 C -0.13 -2.02 2.88 -9.88 -0.03 -2.05 16 19 H 0.14 1.36 8.04 -2.39 -0.02 1.34 16 20 C -0.13 -1.59 6.10 32.25 0.20 -1.39 16 21 C 0.08 1.13 5.61 32.54 0.18 1.31 16 22 H 0.14 1.71 8.14 -2.38 -0.02 1.69 16 23 O -0.40 -9.55 10.82 -148.98 -1.61 -11.17 16 24 C 0.10 2.01 4.70 33.49 0.16 2.16 16 25 H 0.12 2.71 7.74 -2.39 -0.02 2.69 16 26 C -0.20 -2.40 6.73 -8.19 -0.06 -2.45 16 27 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 28 C -0.14 -1.71 9.81 30.60 0.30 -1.41 16 29 C -0.18 -1.92 6.62 -9.14 -0.06 -1.98 16 30 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.58 7.18 -2.39 -0.02 1.56 16 33 H 0.04 1.45 7.18 -2.39 -0.02 1.43 16 34 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.38 19.80 6.85 -92.71 -0.63 19.17 16 37 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.41 6.34 7.64 -92.71 -0.71 5.63 16 41 H 0.07 1.08 7.73 -2.39 -0.02 1.07 16 42 H 0.12 0.71 8.02 -2.39 -0.02 0.69 16 43 H 0.08 1.31 7.67 -2.39 -0.02 1.29 16 44 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.37 353.84 0.24 -74.13 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -0.34 Total: 28.28 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 4.16 Total: -4.42 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -3.95 Total: -115.09 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.66 Total: -31.23 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -74.37 0.24 -74.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698756595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.907 kcal (2) G-P(sol) polarization free energy of solvation -74.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds