Wall clock time and date at job start Tue Mar 31 2020 07:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47706 * 305.51899 * 3 2 1 5 5 C 1.42902 * 114.00354 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46495 * 330.00023 * 5 4 3 7 7 C 1.52998 * 109.47162 * 90.00003 * 5 4 3 8 8 C 1.50702 * 109.46899 * 209.99941 * 5 4 3 9 9 O 1.21273 * 120.00015 * 344.18927 * 8 5 4 10 10 N 1.34778 * 119.99635 * 164.19284 * 8 5 4 11 11 C 1.47481 * 127.03419 * 4.66736 * 10 8 5 12 12 C 1.54007 * 107.07976 * 154.52104 * 11 10 8 13 13 C 1.54618 * 105.04612 * 1.30853 * 12 11 10 14 14 C 1.52998 * 110.73850 * 263.51418 * 13 12 11 15 15 C 1.52999 * 110.74008 * 140.36910 * 13 12 11 16 16 N 1.46504 * 109.47092 * 61.45208 * 15 13 12 17 17 C 1.36931 * 119.99627 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00719 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99852 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99765 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00682 * 21 19 17 23 23 H 1.48505 * 109.46779 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47722 * 300.00330 * 21 19 17 25 25 C 1.48117 * 127.03029 * 184.35809 * 10 8 5 26 26 H 4.38448 * 5.44391 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.47553 * 65.52603 * 3 2 1 28 28 H 1.09005 * 109.47076 * 185.51768 * 3 2 1 29 29 H 1.09006 * 109.47183 * 294.86365 * 7 5 4 30 30 H 1.08994 * 109.47257 * 54.86118 * 7 5 4 31 31 H 1.09000 * 109.46928 * 174.86783 * 7 5 4 32 32 H 1.08999 * 109.91716 * 273.88353 * 11 10 8 33 33 H 1.09001 * 109.91578 * 34.97118 * 11 10 8 34 34 H 1.08998 * 110.32621 * 120.20333 * 12 11 10 35 35 H 1.09005 * 110.32477 * 242.31333 * 12 11 10 36 36 H 1.08996 * 109.47518 * 58.53992 * 14 13 12 37 37 H 1.09000 * 109.47321 * 178.54849 * 14 13 12 38 38 H 1.09008 * 109.46895 * 298.54588 * 14 13 12 39 39 H 1.08994 * 109.47029 * 181.45308 * 15 13 12 40 40 H 1.09000 * 109.46769 * 301.45413 * 15 13 12 41 41 H 0.96998 * 120.00002 * 359.97438 * 16 15 13 42 42 H 0.96999 * 119.99748 * 179.97438 * 20 19 17 43 43 H 1.08999 * 110.66158 * 337.77438 * 25 10 8 44 44 H 1.09003 * 110.65898 * 100.88616 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1227 -0.7818 1.0965 5 6 4.5473 -0.8462 1.1887 6 1 4.9798 -0.7652 0.1914 7 6 5.0546 0.3047 2.0598 8 6 4.9518 -2.1599 1.8065 9 8 4.1305 -2.8328 2.3925 10 7 6.2264 -2.5869 1.7078 11 6 7.3647 -1.8567 1.1194 12 6 8.6433 -2.4022 1.7825 13 6 8.1545 -3.5036 2.7513 14 6 8.0111 -2.9516 4.1710 15 6 9.1043 -4.7029 2.7318 16 7 10.4348 -4.2794 3.1753 17 6 11.4567 -5.1885 3.2390 18 1 11.2819 -6.2179 2.9628 19 6 12.7173 -4.7874 3.6598 20 7 12.9303 -3.5331 3.9969 21 14 14.1113 -6.0279 3.7475 22 1 14.3491 -6.6014 2.3985 23 1 15.3457 -5.3525 4.2222 24 1 13.7475 -7.1156 4.6907 25 6 6.7716 -3.8828 2.1737 26 1 -1.0499 0.0000 0.0003 27 1 3.0095 -0.4249 -0.9353 28 1 3.0088 1.0238 0.0988 29 1 4.8422 1.2539 1.5676 30 1 4.5529 0.2768 3.0270 31 1 6.1301 0.2036 2.2051 32 1 7.4012 -2.0302 0.0440 33 1 7.2652 -0.7900 1.3200 34 1 9.3080 -2.8271 1.0304 35 1 9.1519 -1.6103 2.3324 36 1 7.3079 -2.1188 4.1679 37 1 7.6416 -3.7368 4.8306 38 1 8.9820 -2.6059 4.5262 39 1 8.7271 -5.4759 3.4012 40 1 9.1682 -5.0992 1.7184 41 1 10.5920 -3.3548 3.4230 42 1 13.8111 -3.2529 4.2913 43 1 6.1361 -4.3111 2.9489 44 1 6.8824 -4.5757 1.3395 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699839940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:00 Heat of formation + Delta-G solvation = -7.206781 kcal Electronic energy + Delta-G solvation = -23765.009176 eV Core-core repulsion = 20298.803317 eV Total energy + Delta-G solvation = -3466.205860 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.44617 -38.79921 -37.48085 -34.87750 -33.79616 -32.80530 -31.47336 -30.16222 -29.48787 -27.46674 -26.80438 -25.66421 -24.09469 -22.71845 -22.38845 -19.65507 -19.01057 -18.63550 -17.39019 -17.19488 -16.68942 -16.07148 -15.76619 -15.65470 -14.69723 -14.48793 -14.30984 -13.92342 -13.82148 -13.41372 -13.30550 -12.98672 -12.84926 -12.57623 -12.45472 -12.43302 -12.01925 -11.76954 -11.60717 -11.22699 -11.04180 -11.00270 -10.89048 -10.81000 -10.55206 -10.38030 -10.28285 -10.10993 -9.98631 -9.69446 -9.56066 -8.88553 -8.65944 -6.93253 -5.78336 -3.06315 2.02459 2.46519 2.53732 2.81819 3.43279 3.47992 3.48640 3.65554 4.12982 4.31698 4.53804 4.57499 4.68077 4.72677 4.79688 4.83693 4.99015 5.04925 5.19715 5.30223 5.35891 5.42717 5.50388 5.55537 5.57903 5.75927 5.85723 5.91683 5.92648 5.95408 6.13407 6.20816 6.29984 6.42311 6.52198 6.63800 6.68918 6.76445 6.83702 7.22698 7.50319 7.68737 8.11428 8.40939 9.52493 10.09809 10.45029 11.44495 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.047069 B = 0.002649 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.729434 B =10568.015594 C =10743.708130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.193 4.193 3 C 0.170 3.830 4 O -0.352 6.352 5 C 0.077 3.923 6 H 0.087 0.913 7 C -0.174 4.174 8 C 0.534 3.466 9 O -0.522 6.522 10 N -0.616 5.616 11 C 0.093 3.907 12 C -0.119 4.119 13 C -0.079 4.079 14 C -0.128 4.128 15 C 0.168 3.832 16 N -0.728 5.728 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.117 3.883 26 H 0.222 0.778 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.084 0.916 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.918 10.233 -9.401 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.193 4.193 3 C 0.094 3.906 4 O -0.271 6.271 5 C 0.016 3.984 6 H 0.105 0.895 7 C -0.232 4.232 8 C 0.321 3.679 9 O -0.397 6.397 10 N -0.352 5.352 11 C -0.029 4.029 12 C -0.157 4.157 13 C -0.080 4.080 14 C -0.186 4.186 15 C 0.040 3.960 16 N -0.373 5.373 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.005 4.005 26 H 0.239 0.761 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.496 9.670 -8.959 22.713 hybrid contribution 0.953 -0.185 -0.093 0.975 sum -17.543 9.485 -9.051 21.901 Atomic orbital electron populations 1.24975 0.95891 0.99576 0.98428 1.22423 0.93796 1.01257 1.01788 1.19180 0.85082 0.96045 0.90281 1.88123 1.19097 1.71466 1.48390 1.21870 0.82557 0.93884 1.00101 0.89547 1.22305 1.02447 0.97123 1.01311 1.19835 0.80818 0.86703 0.80581 1.90727 1.49939 1.57200 1.41826 1.48719 1.07115 1.19224 1.60128 1.22358 0.86176 0.96663 0.97742 1.22547 0.95352 0.98699 0.99108 1.21785 0.93839 0.96737 0.95624 1.21698 1.02019 1.00122 0.94714 1.20587 0.85787 0.92539 0.97075 1.42308 1.04539 1.10308 1.80118 1.19180 0.89016 0.91518 1.37260 0.91274 1.24720 0.97674 0.96311 1.02256 1.69639 1.22290 1.14942 1.51404 0.86269 0.81875 0.80334 0.77708 1.21323 1.21747 1.21309 1.22489 0.93952 0.84768 0.99339 0.76094 0.90622 0.90524 0.91086 0.90711 0.90226 0.91452 0.90818 0.89573 0.90182 0.93736 0.92772 0.91253 0.96029 0.96068 0.78088 0.93501 0.89754 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 19.25 29.55 0.57 -0.91 16 2 C -0.19 -1.97 13.73 -37.13 -0.51 -2.48 16 3 C 0.17 1.49 6.22 34.37 0.21 1.71 16 4 O -0.35 -4.39 9.53 -54.63 -0.52 -4.91 16 5 C 0.08 0.81 2.51 -27.88 -0.07 0.74 16 6 H 0.09 0.65 7.62 -51.93 -0.40 0.26 16 7 C -0.17 -1.49 9.37 37.16 0.35 -1.14 16 8 C 0.53 7.59 7.17 -10.98 -0.08 7.51 16 9 O -0.52 -9.75 16.77 -13.83 -0.23 -9.99 16 10 N -0.62 -7.92 3.21 -169.98 -0.55 -8.46 16 11 C 0.09 0.98 6.55 -2.98 -0.02 0.96 16 12 C -0.12 -1.60 5.51 -25.36 -0.14 -1.74 16 13 C -0.08 -1.20 0.64 -152.82 -0.10 -1.29 16 14 C -0.13 -2.03 8.28 37.16 0.31 -1.72 16 15 C 0.17 3.20 5.10 -4.04 -0.02 3.18 16 16 N -0.73 -17.42 5.15 -59.91 -0.31 -17.72 16 17 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 21 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.12 1.64 5.98 -2.32 -0.01 1.63 16 26 H 0.22 1.04 7.80 -54.10 -0.42 0.62 16 27 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.08 0.48 7.99 -51.93 -0.42 0.06 16 29 H 0.07 0.44 7.99 -51.93 -0.42 0.03 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.63 5.85 -51.93 -0.30 0.33 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.62 5.53 -51.93 -0.29 0.34 16 34 H 0.09 1.25 7.85 -51.93 -0.41 0.84 16 35 H 0.08 1.11 7.87 -51.93 -0.41 0.70 16 36 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.22 7.11 -51.92 -0.37 0.85 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 41 H 0.38 9.57 6.38 -40.82 -0.26 9.31 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.08 1.28 7.72 -51.93 -0.40 0.88 16 44 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -34.03 365.15 -7.16 -41.19 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.00 Total: 4.75 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 0.24 Total: -0.68 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.13 Total: -52.90 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.75 Total: -14.89 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.03 -7.16 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699839940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.980 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds