Wall clock time and date at job start Tue Mar 31 2020 07:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47706 * 305.51899 * 3 2 1 5 5 C 1.42902 * 114.00354 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46495 * 330.00023 * 5 4 3 7 7 C 1.52998 * 109.47162 * 90.00003 * 5 4 3 8 8 C 1.50702 * 109.46899 * 209.99941 * 5 4 3 9 9 O 1.21273 * 120.00015 * 344.18927 * 8 5 4 10 10 N 1.34778 * 119.99635 * 164.19284 * 8 5 4 11 11 C 1.47481 * 127.03419 * 4.66736 * 10 8 5 12 12 C 1.54007 * 107.07976 * 154.52104 * 11 10 8 13 13 C 1.54618 * 105.04612 * 1.30853 * 12 11 10 14 14 C 1.52998 * 110.73850 * 263.51418 * 13 12 11 15 15 C 1.52999 * 110.74008 * 140.36910 * 13 12 11 16 16 N 1.46504 * 109.47092 * 61.45208 * 15 13 12 17 17 C 1.36931 * 119.99627 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00719 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99852 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99765 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00682 * 21 19 17 23 23 H 1.48505 * 109.46779 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47722 * 300.00330 * 21 19 17 25 25 C 1.48117 * 127.03029 * 184.35809 * 10 8 5 26 26 H 4.38448 * 5.44391 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.47553 * 65.52603 * 3 2 1 28 28 H 1.09005 * 109.47076 * 185.51768 * 3 2 1 29 29 H 1.09006 * 109.47183 * 294.86365 * 7 5 4 30 30 H 1.08994 * 109.47257 * 54.86118 * 7 5 4 31 31 H 1.09000 * 109.46928 * 174.86783 * 7 5 4 32 32 H 1.08999 * 109.91716 * 273.88353 * 11 10 8 33 33 H 1.09001 * 109.91578 * 34.97118 * 11 10 8 34 34 H 1.08998 * 110.32621 * 120.20333 * 12 11 10 35 35 H 1.09005 * 110.32477 * 242.31333 * 12 11 10 36 36 H 1.08996 * 109.47518 * 58.53992 * 14 13 12 37 37 H 1.09000 * 109.47321 * 178.54849 * 14 13 12 38 38 H 1.09008 * 109.46895 * 298.54588 * 14 13 12 39 39 H 1.08994 * 109.47029 * 181.45308 * 15 13 12 40 40 H 1.09000 * 109.46769 * 301.45413 * 15 13 12 41 41 H 0.96998 * 120.00002 * 359.97438 * 16 15 13 42 42 H 0.96999 * 119.99748 * 179.97438 * 20 19 17 43 43 H 1.08999 * 110.66158 * 337.77438 * 25 10 8 44 44 H 1.09003 * 110.65898 * 100.88616 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1227 -0.7818 1.0965 5 6 4.5473 -0.8462 1.1887 6 1 4.9798 -0.7652 0.1914 7 6 5.0546 0.3047 2.0598 8 6 4.9518 -2.1599 1.8065 9 8 4.1305 -2.8328 2.3925 10 7 6.2264 -2.5869 1.7078 11 6 7.3647 -1.8567 1.1194 12 6 8.6433 -2.4022 1.7825 13 6 8.1545 -3.5036 2.7513 14 6 8.0111 -2.9516 4.1710 15 6 9.1043 -4.7029 2.7318 16 7 10.4348 -4.2794 3.1753 17 6 11.4567 -5.1885 3.2390 18 1 11.2819 -6.2179 2.9628 19 6 12.7173 -4.7874 3.6598 20 7 12.9303 -3.5331 3.9969 21 14 14.1113 -6.0279 3.7475 22 1 14.3491 -6.6014 2.3985 23 1 15.3457 -5.3525 4.2222 24 1 13.7475 -7.1156 4.6907 25 6 6.7716 -3.8828 2.1737 26 1 -1.0499 0.0000 0.0003 27 1 3.0095 -0.4249 -0.9353 28 1 3.0088 1.0238 0.0988 29 1 4.8422 1.2539 1.5676 30 1 4.5529 0.2768 3.0270 31 1 6.1301 0.2036 2.2051 32 1 7.4012 -2.0302 0.0440 33 1 7.2652 -0.7900 1.3200 34 1 9.3080 -2.8271 1.0304 35 1 9.1519 -1.6103 2.3324 36 1 7.3079 -2.1188 4.1679 37 1 7.6416 -3.7368 4.8306 38 1 8.9820 -2.6059 4.5262 39 1 8.7271 -5.4759 3.4012 40 1 9.1682 -5.0992 1.7184 41 1 10.5920 -3.3548 3.4230 42 1 13.8111 -3.2529 4.2913 43 1 6.1361 -4.3111 2.9489 44 1 6.8824 -4.5757 1.3395 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699839940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:59 Heat of formation + Delta-G solvation = -28.924508 kcal Electronic energy + Delta-G solvation = -23765.950928 eV Core-core repulsion = 20298.803317 eV Total energy + Delta-G solvation = -3467.147611 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50308 -39.79131 -38.53954 -36.48054 -34.63272 -34.21131 -32.55448 -31.68852 -30.61788 -28.09863 -28.02463 -27.29368 -25.29329 -24.09530 -23.63938 -20.61610 -20.12759 -19.53373 -19.14168 -18.16599 -17.65413 -17.06679 -16.76608 -16.53143 -16.46960 -15.56206 -15.43228 -15.25752 -15.08593 -14.88606 -14.44262 -14.06704 -13.98908 -13.77933 -13.53253 -13.39869 -13.11133 -12.99111 -12.83624 -12.78553 -12.57576 -12.30655 -12.14839 -12.03667 -11.72413 -11.64377 -11.56484 -11.52450 -11.37858 -10.92416 -10.89388 -10.48886 -9.72736 -8.94072 -7.91492 -5.18479 1.27733 1.49454 1.50440 1.51869 1.57828 1.81120 1.91093 2.58830 2.97153 3.29264 3.42255 3.59225 3.64255 3.67232 3.85711 3.89875 4.02266 4.21588 4.25265 4.29408 4.34973 4.38028 4.46336 4.56925 4.65109 4.72609 4.77585 4.82673 4.85557 4.99144 5.01388 5.04532 5.06377 5.16635 5.22637 5.31998 5.38631 5.46452 5.53740 5.99015 6.30999 6.49321 6.59036 7.06324 7.38738 8.14488 8.39629 9.31547 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.047069 B = 0.002649 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.729434 B =10568.015594 C =10743.708130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.388 6.388 5 C 0.081 3.919 6 H 0.124 0.876 7 C -0.170 4.170 8 C 0.527 3.473 9 O -0.578 6.578 10 N -0.612 5.612 11 C 0.099 3.901 12 C -0.116 4.116 13 C -0.072 4.072 14 C -0.120 4.120 15 C 0.168 3.832 16 N -0.736 5.736 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.073 4.073 20 N -0.966 5.966 21 Si 0.969 3.031 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.282 1.282 25 C 0.121 3.879 26 H 0.252 0.748 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.014 0.986 40 H 0.029 0.971 41 H 0.378 0.622 42 H 0.251 0.749 43 H 0.068 0.932 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.392 11.251 -11.240 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.238 4.238 3 C 0.088 3.912 4 O -0.308 6.308 5 C 0.021 3.979 6 H 0.142 0.858 7 C -0.227 4.227 8 C 0.316 3.684 9 O -0.457 6.457 10 N -0.346 5.346 11 C -0.023 4.023 12 C -0.154 4.154 13 C -0.074 4.074 14 C -0.178 4.178 15 C 0.041 3.959 16 N -0.379 5.379 17 C -0.375 4.375 18 H 0.090 0.910 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.799 3.201 22 H -0.204 1.204 23 H -0.223 1.223 24 H -0.209 1.209 25 C -0.003 4.003 26 H 0.268 0.732 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.047 0.953 41 H 0.211 0.789 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.977 10.685 -10.831 24.323 hybrid contribution 1.007 -0.543 0.477 1.240 sum -17.970 10.142 -10.353 23.086 Atomic orbital electron populations 1.25869 0.96946 0.98398 0.97119 1.23166 0.95116 1.02486 1.03072 1.19489 0.84509 0.97160 0.89992 1.88075 1.20137 1.72507 1.50044 1.21972 0.82253 0.91794 1.01887 0.85803 1.22308 1.02523 0.97707 1.00191 1.20680 0.80362 0.87606 0.79754 1.90697 1.51501 1.59117 1.44409 1.48752 1.07541 1.18777 1.59554 1.22491 0.83316 0.97764 0.98704 1.22477 0.96776 0.97773 0.98370 1.21613 0.93828 0.96004 0.95923 1.21597 1.00958 1.00231 0.94975 1.20689 0.84453 0.94032 0.96738 1.42441 1.05757 1.09613 1.80120 1.19560 0.89878 0.92145 1.35893 0.90956 1.25473 1.00050 0.98013 1.02986 1.69784 1.22396 1.16569 1.52921 0.85275 0.78766 0.78191 0.77885 1.20407 1.22258 1.20886 1.22339 0.92681 0.85898 0.99333 0.73222 0.88768 0.87904 0.88124 0.92932 0.89340 0.88667 0.87912 0.90502 0.90658 0.92396 0.93700 0.93385 0.96848 0.95311 0.78871 0.94068 0.91389 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 19.25 74.32 1.43 -1.21 16 2 C -0.24 -4.58 13.73 31.12 0.43 -4.15 16 3 C 0.16 2.51 6.22 70.17 0.44 2.95 16 4 O -0.39 -9.11 9.53 -130.43 -1.24 -10.35 16 5 C 0.08 1.50 2.51 29.85 0.07 1.57 16 6 H 0.12 1.31 7.62 -2.39 -0.02 1.29 16 7 C -0.17 -2.42 9.37 71.98 0.67 -1.74 16 8 C 0.53 14.32 7.17 87.66 0.63 14.95 16 9 O -0.58 -21.89 16.77 15.54 0.26 -21.63 16 10 N -0.61 -14.55 3.21 -810.10 -2.60 -17.15 16 11 C 0.10 1.74 6.55 86.53 0.57 2.30 16 12 C -0.12 -2.92 5.51 31.49 0.17 -2.75 16 13 C -0.07 -2.17 0.64 -51.09 -0.03 -2.20 16 14 C -0.12 -3.83 8.28 71.98 0.60 -3.23 16 15 C 0.17 6.37 5.10 86.38 0.44 6.81 16 16 N -0.74 -35.45 5.15 -343.45 -1.77 -37.22 16 17 C -0.24 -13.19 9.99 84.04 0.84 -12.35 16 18 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 19 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 20 N -0.97 -57.36 13.06 21.65 0.28 -57.08 16 21 Si 0.97 45.41 29.55 68.60 2.03 47.43 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 C 0.12 3.29 5.98 86.61 0.52 3.81 16 26 H 0.25 1.84 7.80 -4.42 -0.03 1.80 16 27 H 0.09 1.03 8.09 -2.38 -0.02 1.01 16 28 H 0.10 0.96 7.99 -2.38 -0.02 0.94 16 29 H 0.10 0.85 7.99 -2.38 -0.02 0.83 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.08 5.85 -2.39 -0.01 1.06 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.27 5.53 -2.39 -0.01 1.26 16 34 H 0.08 2.11 7.85 -2.39 -0.02 2.09 16 35 H 0.07 1.98 7.87 -2.38 -0.02 1.97 16 36 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.73 7.11 -2.38 -0.02 1.71 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.03 1.07 8.13 -2.39 -0.02 1.05 16 41 H 0.38 19.11 6.38 -92.71 -0.59 18.52 16 42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.07 2.09 7.72 -2.39 -0.02 2.07 16 44 H 0.09 2.17 8.04 -2.39 -0.02 2.15 16 Total: -1.00 -75.66 365.15 4.59 -71.06 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.39 Total: 23.80 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 7.24 Total: 1.14 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -4.08 Total: -111.45 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.98 Total: -31.98 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -75.66 4.59 -71.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699839940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.139 kcal (2) G-P(sol) polarization free energy of solvation -75.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds