Wall clock time and date at job start Tue Mar 31 2020 07:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47202 * 73.05495 * 3 2 1 5 5 C 1.42896 * 113.99961 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47214 * 330.00332 * 5 4 3 7 7 C 1.53007 * 109.47112 * 90.00094 * 5 4 3 8 8 C 1.50700 * 109.47224 * 210.00140 * 5 4 3 9 9 O 1.21280 * 119.99585 * 347.23779 * 8 5 4 10 10 N 1.34776 * 120.00111 * 167.24389 * 8 5 4 11 11 C 1.47026 * 125.64851 * 4.86753 * 10 8 5 12 12 C 1.54324 * 107.27084 * 181.02527 * 11 10 8 13 13 C 1.55157 * 102.94018 * 22.19339 * 12 11 10 14 14 C 1.53002 * 111.00114 * 82.57234 * 13 12 11 15 15 C 1.53004 * 111.00292 * 206.41997 * 13 12 11 16 16 N 1.46497 * 109.46972 * 298.54824 * 15 13 12 17 17 C 1.36945 * 119.99718 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99727 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99914 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00313 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99782 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47222 * 0.02562 * 21 19 17 23 23 H 1.48512 * 109.46863 * 120.00407 * 21 19 17 24 24 H 1.48501 * 109.47424 * 240.00028 * 21 19 17 25 25 C 1.47419 * 125.65039 * 184.56441 * 10 8 5 26 26 H 4.38441 * 5.44484 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47331 * 193.05482 * 3 2 1 28 28 H 1.09008 * 109.47419 * 313.05286 * 3 2 1 29 29 H 1.09004 * 109.47186 * 297.59380 * 7 5 4 30 30 H 1.09002 * 109.46785 * 57.59416 * 7 5 4 31 31 H 1.08992 * 109.47233 * 177.59637 * 7 5 4 32 32 H 1.09000 * 109.88245 * 300.44323 * 11 10 8 33 33 H 1.08999 * 109.87690 * 61.45531 * 11 10 8 34 34 H 1.08992 * 110.71878 * 140.55744 * 12 11 10 35 35 H 1.09000 * 110.72009 * 263.65276 * 12 11 10 36 36 H 1.09004 * 109.47571 * 61.45182 * 14 13 12 37 37 H 1.09003 * 109.46883 * 181.44892 * 14 13 12 38 38 H 1.08995 * 109.47526 * 301.45096 * 14 13 12 39 39 H 1.08994 * 109.46789 * 58.54907 * 15 13 12 40 40 H 1.09004 * 109.46781 * 178.55026 * 15 13 12 41 41 H 0.96998 * 120.00588 * 359.97438 * 16 15 13 42 42 H 0.96995 * 120.00321 * 179.97438 * 20 19 17 43 43 H 1.08995 * 110.37031 * 274.74710 * 25 10 8 44 44 H 1.09004 * 110.36668 * 37.06501 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1225 -0.3918 -1.2888 5 6 4.5470 -0.4235 -1.3969 6 1 4.9789 0.3187 -0.7255 7 6 5.0567 -1.8147 -1.0148 8 6 4.9502 -0.1128 -2.8153 9 8 4.1172 -0.1150 -3.6968 10 7 6.2365 0.1673 -3.1043 11 6 7.3602 0.1065 -2.1581 12 6 8.6291 0.5334 -2.9256 13 6 8.0579 1.3545 -4.1118 14 6 7.7599 2.7943 -3.6888 15 6 9.0098 1.3229 -5.3093 16 7 10.2902 1.9259 -4.9313 17 6 11.3049 2.0087 -5.8473 18 1 11.1609 1.6299 -6.8483 19 6 12.5180 2.5806 -5.4893 20 7 12.6933 3.0427 -4.2695 21 14 13.9023 2.6929 -6.7385 22 1 13.4551 2.1058 -8.0271 23 1 14.2688 4.1172 -6.9446 24 1 15.0836 1.9455 -6.2370 25 6 6.7508 0.5794 -4.4230 26 1 -1.0499 0.0001 -0.0002 27 1 3.0089 1.0019 0.2321 28 1 3.0097 -0.7008 0.7510 29 1 4.8022 -2.0221 0.0246 30 1 4.5918 -2.5613 -1.6587 31 1 6.1389 -1.8517 -1.1382 32 1 7.1824 0.7890 -1.3270 33 1 7.4750 -0.9109 -1.7840 34 1 9.2682 1.1549 -2.2986 35 1 9.1747 -0.3394 -3.2845 36 1 8.6831 3.2778 -3.3693 37 1 7.3367 3.3405 -4.5319 38 1 7.0475 2.7907 -2.8639 39 1 9.1714 0.2901 -5.6177 40 1 8.5733 1.8847 -6.1352 41 1 10.4194 2.2665 -4.0323 42 1 13.5411 3.4420 -4.0192 43 1 6.9629 -0.2953 -5.0377 44 1 6.0340 1.2308 -4.9231 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699839941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:02 Heat of formation + Delta-G solvation = -9.149848 kcal Electronic energy + Delta-G solvation = -23721.448271 eV Core-core repulsion = 20255.158154 eV Total energy + Delta-G solvation = -3466.290117 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48262 -38.79987 -37.49289 -34.89850 -33.79328 -32.84147 -31.45887 -30.21278 -29.43035 -27.45875 -26.89983 -25.66555 -24.15616 -22.62693 -22.41381 -19.66379 -19.02594 -18.67685 -17.37110 -17.19580 -16.72213 -16.21622 -15.78178 -15.50537 -14.72741 -14.45355 -14.27607 -14.00923 -13.90769 -13.55298 -13.14747 -13.01985 -12.87515 -12.56763 -12.54254 -12.27338 -12.14155 -11.74759 -11.61525 -11.45430 -11.05791 -10.99908 -10.88229 -10.85640 -10.57368 -10.36463 -10.27529 -10.10850 -9.97953 -9.71089 -9.56264 -8.90731 -8.62925 -6.94395 -5.79905 -3.07824 2.03662 2.47521 2.53488 2.83448 3.41572 3.48008 3.49672 3.66026 4.13127 4.31456 4.52737 4.56424 4.66620 4.69808 4.77574 4.80832 4.99054 5.03204 5.18663 5.28407 5.33667 5.40064 5.48801 5.56090 5.56830 5.70104 5.82451 5.85718 5.96404 6.00271 6.08920 6.23425 6.25011 6.37427 6.45748 6.60717 6.68654 6.72577 6.81287 7.23644 7.46744 7.68906 8.11137 8.39425 9.51226 10.08051 10.43245 11.43105 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.041792 B = 0.002645 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.818156 B =10582.385856 C =10660.550281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.192 4.192 3 C 0.170 3.830 4 O -0.352 6.352 5 C 0.076 3.924 6 H 0.088 0.912 7 C -0.175 4.175 8 C 0.529 3.471 9 O -0.522 6.522 10 N -0.612 5.612 11 C 0.094 3.906 12 C -0.115 4.115 13 C -0.078 4.078 14 C -0.128 4.128 15 C 0.169 3.831 16 N -0.728 5.728 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.119 3.881 26 H 0.222 0.778 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.022 0.978 40 H 0.023 0.977 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.071 0.929 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.285 -7.218 11.965 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.192 4.192 3 C 0.094 3.906 4 O -0.271 6.271 5 C 0.015 3.985 6 H 0.106 0.894 7 C -0.232 4.232 8 C 0.316 3.684 9 O -0.397 6.397 10 N -0.348 5.348 11 C -0.029 4.029 12 C -0.153 4.153 13 C -0.079 4.079 14 C -0.186 4.186 15 C 0.041 3.959 16 N -0.373 5.373 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.003 4.003 26 H 0.239 0.761 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.858 -7.303 11.199 22.308 hybrid contribution 0.916 0.278 -0.073 0.960 sum -16.942 -7.026 11.126 21.452 Atomic orbital electron populations 1.24972 0.95889 1.00403 0.97628 1.22423 0.93793 1.00895 1.02125 1.19184 0.85084 1.00146 0.86184 1.88118 1.19091 1.89039 1.30822 1.21864 0.82586 0.99027 0.95004 0.89428 1.22304 1.02422 0.95741 1.02749 1.19880 0.81001 0.77373 0.90157 1.90729 1.49740 1.50746 1.48512 1.48422 1.06103 1.67638 1.12642 1.22296 0.86764 1.01021 0.92771 1.22667 0.95075 1.00845 0.96745 1.21986 0.93857 0.95272 0.96789 1.21665 1.01793 0.94547 1.00573 1.20553 0.86349 0.96372 0.92650 1.42313 1.09260 1.72044 1.13667 1.19274 0.91694 1.32396 0.93439 0.91145 1.24716 0.98033 1.01579 0.96674 1.69654 1.24912 1.46063 1.17649 0.86127 0.82415 0.77246 0.80462 1.20573 1.21921 1.21920 1.22364 0.95096 0.98683 0.84166 0.76096 0.90572 0.90544 0.91084 0.90884 0.90256 0.91501 0.91223 0.89330 0.89997 0.91107 0.92627 0.93677 0.95997 0.95951 0.78122 0.93598 0.91083 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 19.25 29.55 0.57 -0.93 16 2 C -0.19 -1.99 13.73 -37.12 -0.51 -2.50 16 3 C 0.17 1.52 6.22 34.37 0.21 1.73 16 4 O -0.35 -4.41 9.51 -54.81 -0.52 -4.93 16 5 C 0.08 0.80 2.53 -27.88 -0.07 0.73 16 6 H 0.09 0.68 7.47 -51.93 -0.39 0.30 16 7 C -0.17 -1.42 9.44 37.16 0.35 -1.07 16 8 C 0.53 7.52 7.17 -10.99 -0.08 7.44 16 9 O -0.52 -9.75 16.84 -14.02 -0.24 -9.99 16 10 N -0.61 -7.89 3.31 -170.39 -0.56 -8.46 16 11 C 0.09 0.99 5.73 -3.06 -0.02 0.97 16 12 C -0.12 -1.54 5.38 -24.90 -0.13 -1.67 16 13 C -0.08 -1.17 0.62 -152.24 -0.09 -1.26 16 14 C -0.13 -1.93 8.41 37.16 0.31 -1.62 16 15 C 0.17 3.20 5.23 -4.04 -0.02 3.18 16 16 N -0.73 -17.30 5.18 -59.91 -0.31 -17.61 16 17 C -0.24 -6.41 9.99 -15.06 -0.15 -6.56 16 18 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.30 13.06 55.49 0.72 -26.57 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.12 1.69 5.83 -2.42 -0.01 1.68 16 26 H 0.22 1.07 7.80 -54.09 -0.42 0.65 16 27 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.08 0.48 7.93 -51.92 -0.41 0.07 16 29 H 0.07 0.43 7.92 -51.93 -0.41 0.02 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.56 5.56 -51.93 -0.29 0.28 16 32 H 0.07 0.59 7.93 -51.93 -0.41 0.18 16 33 H 0.07 0.60 6.05 -51.93 -0.31 0.29 16 34 H 0.09 1.23 7.95 -51.93 -0.41 0.82 16 35 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 36 H 0.07 1.19 7.20 -51.93 -0.37 0.82 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.60 7.89 -51.93 -0.41 0.19 16 39 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.38 9.45 6.37 -40.82 -0.26 9.19 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.07 1.00 8.01 -51.93 -0.42 0.59 16 44 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -33.95 364.68 -7.18 -41.13 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.01 Total: 4.32 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 0.26 Total: -0.38 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.15 Total: -52.64 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.76 Total: -14.92 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.95 -7.18 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699839941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.980 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds