Wall clock time and date at job start Tue Mar 31 2020 07:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47202 * 73.05495 * 3 2 1 5 5 C 1.42896 * 113.99961 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47214 * 330.00332 * 5 4 3 7 7 C 1.53007 * 109.47112 * 90.00094 * 5 4 3 8 8 C 1.50700 * 109.47224 * 210.00140 * 5 4 3 9 9 O 1.21280 * 119.99585 * 347.23779 * 8 5 4 10 10 N 1.34776 * 120.00111 * 167.24389 * 8 5 4 11 11 C 1.47026 * 125.64851 * 4.86753 * 10 8 5 12 12 C 1.54324 * 107.27084 * 181.02527 * 11 10 8 13 13 C 1.55157 * 102.94018 * 22.19339 * 12 11 10 14 14 C 1.53002 * 111.00114 * 82.57234 * 13 12 11 15 15 C 1.53004 * 111.00292 * 206.41997 * 13 12 11 16 16 N 1.46497 * 109.46972 * 298.54824 * 15 13 12 17 17 C 1.36945 * 119.99718 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99727 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99914 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00313 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99782 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47222 * 0.02562 * 21 19 17 23 23 H 1.48512 * 109.46863 * 120.00407 * 21 19 17 24 24 H 1.48501 * 109.47424 * 240.00028 * 21 19 17 25 25 C 1.47419 * 125.65039 * 184.56441 * 10 8 5 26 26 H 4.38441 * 5.44484 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.47331 * 193.05482 * 3 2 1 28 28 H 1.09008 * 109.47419 * 313.05286 * 3 2 1 29 29 H 1.09004 * 109.47186 * 297.59380 * 7 5 4 30 30 H 1.09002 * 109.46785 * 57.59416 * 7 5 4 31 31 H 1.08992 * 109.47233 * 177.59637 * 7 5 4 32 32 H 1.09000 * 109.88245 * 300.44323 * 11 10 8 33 33 H 1.08999 * 109.87690 * 61.45531 * 11 10 8 34 34 H 1.08992 * 110.71878 * 140.55744 * 12 11 10 35 35 H 1.09000 * 110.72009 * 263.65276 * 12 11 10 36 36 H 1.09004 * 109.47571 * 61.45182 * 14 13 12 37 37 H 1.09003 * 109.46883 * 181.44892 * 14 13 12 38 38 H 1.08995 * 109.47526 * 301.45096 * 14 13 12 39 39 H 1.08994 * 109.46789 * 58.54907 * 15 13 12 40 40 H 1.09004 * 109.46781 * 178.55026 * 15 13 12 41 41 H 0.96998 * 120.00588 * 359.97438 * 16 15 13 42 42 H 0.96995 * 120.00321 * 179.97438 * 20 19 17 43 43 H 1.08995 * 110.37031 * 274.74710 * 25 10 8 44 44 H 1.09004 * 110.36668 * 37.06501 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1225 -0.3918 -1.2888 5 6 4.5470 -0.4235 -1.3969 6 1 4.9789 0.3187 -0.7255 7 6 5.0567 -1.8147 -1.0148 8 6 4.9502 -0.1128 -2.8153 9 8 4.1172 -0.1150 -3.6968 10 7 6.2365 0.1673 -3.1043 11 6 7.3602 0.1065 -2.1581 12 6 8.6291 0.5334 -2.9256 13 6 8.0579 1.3545 -4.1118 14 6 7.7599 2.7943 -3.6888 15 6 9.0098 1.3229 -5.3093 16 7 10.2902 1.9259 -4.9313 17 6 11.3049 2.0087 -5.8473 18 1 11.1609 1.6299 -6.8483 19 6 12.5180 2.5806 -5.4893 20 7 12.6933 3.0427 -4.2695 21 14 13.9023 2.6929 -6.7385 22 1 13.4551 2.1058 -8.0271 23 1 14.2688 4.1172 -6.9446 24 1 15.0836 1.9455 -6.2370 25 6 6.7508 0.5794 -4.4230 26 1 -1.0499 0.0001 -0.0002 27 1 3.0089 1.0019 0.2321 28 1 3.0097 -0.7008 0.7510 29 1 4.8022 -2.0221 0.0246 30 1 4.5918 -2.5613 -1.6587 31 1 6.1389 -1.8517 -1.1382 32 1 7.1824 0.7890 -1.3270 33 1 7.4750 -0.9109 -1.7840 34 1 9.2682 1.1549 -2.2986 35 1 9.1747 -0.3394 -3.2845 36 1 8.6831 3.2778 -3.3693 37 1 7.3367 3.3405 -4.5319 38 1 7.0475 2.7907 -2.8639 39 1 9.1714 0.2901 -5.6177 40 1 8.5733 1.8847 -6.1352 41 1 10.4194 2.2665 -4.0323 42 1 13.5411 3.4420 -4.0192 43 1 6.9629 -0.2953 -5.0377 44 1 6.0340 1.2308 -4.9231 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699839941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:02 Heat of formation + Delta-G solvation = -30.867654 kcal Electronic energy + Delta-G solvation = -23722.390026 eV Core-core repulsion = 20255.158154 eV Total energy + Delta-G solvation = -3467.231872 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.53790 -39.78841 -38.54881 -36.49991 -34.65166 -34.21629 -32.56736 -31.68338 -30.57192 -28.09438 -28.08429 -27.28788 -25.31558 -24.15352 -23.52982 -20.62922 -20.16896 -19.54710 -19.12994 -18.16458 -17.67878 -17.26749 -16.63645 -16.49265 -16.41575 -15.63017 -15.48445 -15.25823 -15.10373 -14.88884 -14.44906 -14.14282 -13.87189 -13.82480 -13.49547 -13.35298 -13.08090 -12.99647 -12.87837 -12.85522 -12.61223 -12.41916 -12.08834 -12.05684 -11.72367 -11.59037 -11.55931 -11.51435 -11.43471 -10.93596 -10.91828 -10.49023 -9.69191 -8.94684 -7.92596 -5.19400 1.28184 1.49044 1.49927 1.50120 1.59336 1.80969 1.91674 2.57935 2.96878 3.27028 3.41455 3.57047 3.60050 3.65600 3.84491 3.89863 4.02688 4.21561 4.25024 4.25662 4.33019 4.39125 4.45973 4.56530 4.63223 4.72117 4.78252 4.85357 4.87132 5.00389 5.01498 5.05689 5.09113 5.18330 5.24215 5.27069 5.34531 5.46244 5.53570 5.98448 6.30488 6.45753 6.58875 7.05841 7.38338 8.13162 8.39106 9.30789 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.041792 B = 0.002645 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.818156 B =10582.385856 C =10660.550281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.388 6.388 5 C 0.080 3.920 6 H 0.122 0.878 7 C -0.169 4.169 8 C 0.523 3.477 9 O -0.578 6.578 10 N -0.608 5.608 11 C 0.098 3.902 12 C -0.113 4.113 13 C -0.071 4.071 14 C -0.121 4.121 15 C 0.168 3.832 16 N -0.735 5.735 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.072 4.072 20 N -0.965 5.965 21 Si 0.968 3.032 22 H -0.270 1.270 23 H -0.295 1.295 24 H -0.293 1.293 25 C 0.124 3.876 26 H 0.252 0.748 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.024 0.976 40 H 0.015 0.985 41 H 0.379 0.621 42 H 0.251 0.749 43 H 0.070 0.930 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 -7.975 13.577 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.239 4.239 3 C 0.089 3.911 4 O -0.308 6.308 5 C 0.020 3.980 6 H 0.139 0.861 7 C -0.227 4.227 8 C 0.312 3.688 9 O -0.457 6.457 10 N -0.342 5.342 11 C -0.023 4.023 12 C -0.151 4.151 13 C -0.072 4.072 14 C -0.178 4.178 15 C 0.041 3.959 16 N -0.378 5.378 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.264 4.264 20 N -0.616 5.616 21 Si 0.798 3.202 22 H -0.195 1.195 23 H -0.223 1.223 24 H -0.220 1.220 25 C 0.000 4.000 26 H 0.268 0.732 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.033 0.967 41 H 0.212 0.788 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.291 -8.080 12.819 23.752 hybrid contribution 0.962 0.506 -0.614 1.248 sum -17.329 -7.574 12.205 22.508 Atomic orbital electron populations 1.25870 0.96940 0.99267 0.96219 1.23162 0.95109 1.02121 1.03465 1.19481 0.84537 1.01775 0.85345 1.88069 1.20196 1.89437 1.33052 1.21981 0.82230 1.01271 0.92559 0.86052 1.22306 1.02894 0.93560 1.03897 1.20717 0.80477 0.76147 0.91488 1.90699 1.51243 1.53327 1.50479 1.48451 1.06574 1.66820 1.12398 1.22446 0.84095 1.03502 0.92265 1.22603 0.96373 1.00003 0.96097 1.21797 0.93462 0.95902 0.96030 1.21575 1.01173 0.94094 1.00981 1.20643 0.85337 0.95615 0.94318 1.42426 1.10254 1.72174 1.12975 1.19618 0.92505 1.31245 0.93944 0.91070 1.25446 1.00337 1.02209 0.98423 1.69784 1.25220 1.47346 1.19220 0.85153 0.79518 0.76753 0.78804 1.19462 1.22277 1.22012 1.22170 0.94236 0.98303 0.85247 0.73197 0.89007 0.87805 0.88335 0.92870 0.88909 0.88659 0.88357 0.89833 0.90828 0.93107 0.93397 0.91527 0.95847 0.96685 0.78750 0.94030 0.91211 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 19.25 74.32 1.43 -1.25 16 2 C -0.24 -4.66 13.73 31.12 0.43 -4.23 16 3 C 0.16 2.58 6.22 70.18 0.44 3.02 16 4 O -0.39 -9.16 9.51 -130.26 -1.24 -10.40 16 5 C 0.08 1.47 2.53 29.85 0.08 1.54 16 6 H 0.12 1.37 7.47 -2.39 -0.02 1.35 16 7 C -0.17 -2.21 9.44 71.98 0.68 -1.53 16 8 C 0.52 14.19 7.17 87.66 0.63 14.82 16 9 O -0.58 -21.86 16.84 15.69 0.26 -21.60 16 10 N -0.61 -14.55 3.31 -811.37 -2.69 -17.24 16 11 C 0.10 1.73 5.73 86.73 0.50 2.23 16 12 C -0.11 -2.82 5.38 31.78 0.17 -2.64 16 13 C -0.07 -2.08 0.62 -50.71 -0.03 -2.11 16 14 C -0.12 -3.56 8.41 71.98 0.61 -2.95 16 15 C 0.17 6.40 5.23 86.38 0.45 6.85 16 16 N -0.73 -35.17 5.18 -343.45 -1.78 -36.95 16 17 C -0.24 -13.08 9.99 84.03 0.84 -12.24 16 18 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 20 N -0.96 -56.84 13.06 21.65 0.28 -56.55 16 21 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 C 0.12 3.45 5.83 86.93 0.51 3.95 16 26 H 0.25 1.89 7.80 -4.42 -0.03 1.85 16 27 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 28 H 0.10 0.99 7.93 -2.38 -0.02 0.97 16 29 H 0.10 0.77 7.92 -2.38 -0.02 0.75 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.94 5.56 -2.39 -0.01 0.92 16 32 H 0.10 1.24 7.93 -2.39 -0.02 1.22 16 33 H 0.10 1.26 6.05 -2.39 -0.01 1.24 16 34 H 0.08 2.21 7.95 -2.39 -0.02 2.19 16 35 H 0.07 1.97 8.04 -2.39 -0.02 1.95 16 36 H 0.05 1.70 7.20 -2.39 -0.02 1.69 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.66 7.89 -2.39 -0.02 1.64 16 39 H 0.02 0.90 8.10 -2.39 -0.02 0.88 16 40 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.38 18.85 6.37 -92.71 -0.59 18.26 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.07 1.96 8.01 -2.39 -0.02 1.94 16 44 H 0.07 2.00 8.00 -2.39 -0.02 1.98 16 Total: -1.00 -75.24 364.68 4.45 -70.80 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.39 Total: 22.64 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 7.18 Total: 1.92 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -4.18 Total: -110.74 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.97 Total: -32.00 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -75.24 4.45 -70.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699839941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.929 kcal (2) G-P(sol) polarization free energy of solvation -75.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds