Wall clock time and date at job start Tue Mar 31 2020 07:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46934 * 130.25856 * 3 2 1 5 5 C 1.42898 * 113.99967 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47195 * 30.00481 * 5 4 3 7 7 C 1.53002 * 109.47563 * 270.00314 * 5 4 3 8 8 C 1.50708 * 109.46967 * 150.00344 * 5 4 3 9 9 O 1.21278 * 120.00044 * 5.00146 * 8 5 4 10 10 N 1.34777 * 119.99987 * 185.00242 * 8 5 4 11 11 C 1.47427 * 125.64588 * 359.69340 * 10 8 5 12 12 C 1.55132 * 104.72154 * 155.81558 * 11 10 8 13 13 C 1.55158 * 101.48506 * 37.29191 * 12 11 10 14 14 C 1.53004 * 110.87212 * 82.76752 * 13 12 11 15 15 C 1.52993 * 110.72195 * 205.96645 * 13 12 11 16 16 N 1.46503 * 109.47521 * 293.52551 * 15 13 12 17 17 C 1.36932 * 120.00164 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00335 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00000 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99623 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00273 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47021 * 89.99520 * 21 19 17 23 23 H 1.48494 * 109.47363 * 209.99767 * 21 19 17 24 24 H 1.48508 * 109.46727 * 329.99881 * 21 19 17 25 25 C 1.47022 * 125.65071 * 179.97438 * 10 8 5 26 26 H 4.38443 * 5.44391 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 28 28 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 29 29 H 1.08995 * 109.47088 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.46862 * 299.99976 * 7 5 4 31 31 H 1.08997 * 109.46936 * 59.99967 * 7 5 4 32 32 H 1.09003 * 110.36292 * 274.74232 * 11 10 8 33 33 H 1.09000 * 110.37015 * 37.07068 * 11 10 8 34 34 H 1.08993 * 111.19448 * 279.18645 * 12 11 10 35 35 H 1.08998 * 110.93916 * 155.28494 * 12 11 10 36 36 H 1.08999 * 109.47077 * 306.38866 * 14 13 12 37 37 H 1.08996 * 109.47412 * 66.38464 * 14 13 12 38 38 H 1.09001 * 109.47145 * 186.38963 * 14 13 12 39 39 H 1.09003 * 109.47107 * 53.52310 * 15 13 12 40 40 H 1.09005 * 109.47460 * 173.52240 * 15 13 12 41 41 H 0.97001 * 119.99595 * 359.97438 * 16 15 13 42 42 H 0.97005 * 119.99457 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.87904 * 300.44089 * 25 10 8 44 44 H 1.09001 * 109.87916 * 61.44755 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.8715 -1.0281 5 6 4.5464 0.9455 -1.1139 6 1 4.9795 -0.0010 -0.7906 7 6 5.0538 2.0729 -0.2124 8 6 4.9501 1.2219 -2.5393 9 8 4.1017 1.4335 -3.3797 10 7 6.2540 1.2340 -2.8802 11 6 7.3840 1.0004 -1.9626 12 6 8.5372 0.5064 -2.8752 13 6 8.3219 1.3752 -4.1426 14 6 8.9578 2.7562 -3.9714 15 6 8.8821 0.6735 -5.3814 16 7 10.3401 0.5809 -5.2729 17 6 11.0648 -0.0123 -6.2720 18 1 10.5615 -0.4122 -7.1398 19 6 12.4463 -0.1005 -6.1688 20 7 13.0596 0.3864 -5.1110 21 14 13.4348 -0.9103 -7.5313 22 1 13.8237 0.1121 -8.5355 23 1 14.6561 -1.5289 -6.9562 24 1 12.6102 -1.9580 -8.1854 25 6 6.7852 1.4879 -4.2273 26 1 -1.0502 -0.0001 0.0004 27 1 3.0092 0.3479 0.9672 28 1 3.0098 -1.0104 -0.1831 29 1 6.1403 2.1296 -0.2783 30 1 4.6206 3.0195 -0.5358 31 1 4.7618 1.8730 0.8185 32 1 7.6639 1.9273 -1.4619 33 1 7.1263 0.2354 -1.2303 34 1 8.4310 -0.5536 -3.1055 35 1 9.5073 0.7103 -2.4220 36 1 8.5877 3.2155 -3.0548 37 1 10.0413 2.6528 -3.9139 38 1 8.6974 3.3844 -4.8233 39 1 8.4588 -0.3283 -5.4541 40 1 8.6196 1.2443 -6.2722 41 1 10.7922 0.9404 -4.4936 42 1 14.0250 0.3244 -5.0387 43 1 6.3968 0.7458 -4.9249 44 1 6.5022 2.4883 -4.5549 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699839942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:05 Heat of formation + Delta-G solvation = -8.466677 kcal Electronic energy + Delta-G solvation = -23696.834794 eV Core-core repulsion = 20230.574301 eV Total energy + Delta-G solvation = -3466.260493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.48954 -38.81229 -37.50530 -34.92760 -33.79669 -32.87394 -31.45572 -30.23324 -29.37183 -27.45703 -26.78834 -25.71914 -24.18816 -22.65598 -22.41349 -19.67526 -19.01347 -18.69626 -17.41156 -17.20129 -16.61551 -16.08030 -15.93477 -15.62993 -14.70190 -14.48772 -14.11040 -14.01245 -13.89918 -13.54293 -13.18446 -13.10806 -12.73701 -12.57225 -12.50142 -12.35005 -12.09482 -11.83775 -11.57176 -11.48270 -11.04964 -10.99502 -10.88049 -10.84472 -10.61539 -10.37095 -10.26856 -10.10133 -9.97578 -9.70258 -9.55549 -8.89729 -8.64635 -6.94254 -5.79616 -3.07451 2.04070 2.47737 2.54421 2.83417 3.42339 3.48039 3.49124 3.65615 4.13042 4.31394 4.52280 4.55640 4.65121 4.68240 4.79028 4.81090 5.00365 5.04483 5.19040 5.27655 5.33901 5.38249 5.44721 5.56353 5.56678 5.68915 5.78848 5.87427 5.96867 6.02879 6.05011 6.19710 6.27872 6.36577 6.43105 6.64101 6.68573 6.74321 6.82196 7.23811 7.46234 7.68795 8.11966 8.39837 9.51515 10.08220 10.43535 11.43333 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035812 B = 0.002662 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.678042 B =10516.756360 C =10644.234730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.192 4.192 3 C 0.170 3.830 4 O -0.352 6.352 5 C 0.076 3.924 6 H 0.089 0.911 7 C -0.175 4.175 8 C 0.528 3.472 9 O -0.522 6.522 10 N -0.612 5.612 11 C 0.093 3.907 12 C -0.116 4.116 13 C -0.077 4.077 14 C -0.133 4.133 15 C 0.168 3.832 16 N -0.728 5.728 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.120 3.880 26 H 0.222 0.778 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.070 0.930 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.186 1.376 14.482 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.192 4.192 3 C 0.094 3.906 4 O -0.270 6.270 5 C 0.015 3.985 6 H 0.107 0.893 7 C -0.233 4.233 8 C 0.314 3.686 9 O -0.397 6.397 10 N -0.348 5.348 11 C -0.029 4.029 12 C -0.154 4.154 13 C -0.078 4.078 14 C -0.190 4.190 15 C 0.040 3.960 16 N -0.373 5.373 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.002 4.002 26 H 0.239 0.761 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.816 1.502 13.772 22.568 hybrid contribution 0.785 -0.488 -0.298 0.971 sum -17.030 1.014 13.474 21.740 Atomic orbital electron populations 1.24976 0.95891 0.99272 0.98767 1.22423 0.93795 1.01404 1.01605 1.19181 0.85092 0.94476 0.91828 1.88114 1.19068 1.65563 1.54283 1.21850 0.82625 1.00392 0.93615 0.89306 1.22319 1.02492 0.98998 0.99472 1.19893 0.81111 0.77849 0.89703 1.90732 1.49331 1.48173 1.51501 1.48432 1.04643 1.70454 1.11247 1.22619 0.86690 1.00449 0.93159 1.22872 0.97713 1.00277 0.94568 1.21795 0.92297 0.96739 0.96991 1.21766 1.02122 0.94436 1.00659 1.20602 0.86414 0.96143 0.92849 1.42337 0.99714 1.71156 1.24109 1.19226 0.89127 1.29837 0.98684 0.91226 1.24717 0.96519 1.01805 0.97938 1.69651 1.08472 1.51453 1.28731 0.86191 0.79771 0.78952 0.81289 1.21755 1.21817 1.20801 1.22055 0.93314 1.01510 0.83322 0.76093 0.90554 0.90572 0.90184 0.90984 0.91116 0.90903 0.90864 0.90144 0.89144 0.93515 0.90755 0.92585 0.96046 0.95995 0.78060 0.93549 0.91117 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 19.25 29.55 0.57 -0.94 16 2 C -0.19 -1.99 13.73 -37.12 -0.51 -2.50 16 3 C 0.17 1.52 6.22 34.37 0.21 1.73 16 4 O -0.35 -4.40 9.48 -55.09 -0.52 -4.92 16 5 C 0.08 0.80 2.48 -27.88 -0.07 0.73 16 6 H 0.09 0.68 7.27 -51.93 -0.38 0.31 16 7 C -0.18 -1.40 9.39 37.16 0.35 -1.05 16 8 C 0.53 7.54 7.24 -10.98 -0.08 7.46 16 9 O -0.52 -9.83 16.83 -14.30 -0.24 -10.08 16 10 N -0.61 -7.92 3.32 -170.38 -0.57 -8.49 16 11 C 0.09 0.96 5.02 -2.41 -0.01 0.95 16 12 C -0.12 -1.54 5.74 -24.46 -0.14 -1.68 16 13 C -0.08 -1.16 0.61 -152.68 -0.09 -1.25 16 14 C -0.13 -1.94 8.28 37.16 0.31 -1.63 16 15 C 0.17 3.22 5.08 -4.04 -0.02 3.20 16 16 N -0.73 -17.38 5.15 -59.91 -0.31 -17.69 16 17 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 21 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.12 1.73 6.04 -3.07 -0.02 1.71 16 26 H 0.22 1.07 7.80 -54.08 -0.42 0.65 16 27 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 28 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.08 0.55 5.55 -51.93 -0.29 0.26 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 32 H 0.07 0.65 6.72 -51.93 -0.35 0.30 16 33 H 0.07 0.58 7.33 -51.93 -0.38 0.20 16 34 H 0.08 1.14 8.02 -51.93 -0.42 0.73 16 35 H 0.09 1.23 8.04 -51.93 -0.42 0.81 16 36 H 0.05 0.58 7.41 -51.93 -0.38 0.19 16 37 H 0.07 1.26 6.69 -51.93 -0.35 0.91 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.38 9.45 6.21 -40.82 -0.25 9.20 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.07 1.08 7.82 -51.93 -0.41 0.68 16 44 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -34.16 362.50 -7.15 -41.31 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.92 Total: 4.31 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 0.25 Total: -0.37 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.15 Total: -52.77 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.76 Total: -15.00 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.16 -7.15 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699839942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.843 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds