Wall clock time and date at job start Tue Mar 31 2020 07:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46934 * 130.25856 * 3 2 1 5 5 C 1.42898 * 113.99967 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47195 * 30.00481 * 5 4 3 7 7 C 1.53002 * 109.47563 * 270.00314 * 5 4 3 8 8 C 1.50708 * 109.46967 * 150.00344 * 5 4 3 9 9 O 1.21278 * 120.00044 * 5.00146 * 8 5 4 10 10 N 1.34777 * 119.99987 * 185.00242 * 8 5 4 11 11 C 1.47427 * 125.64588 * 359.69340 * 10 8 5 12 12 C 1.55132 * 104.72154 * 155.81558 * 11 10 8 13 13 C 1.55158 * 101.48506 * 37.29191 * 12 11 10 14 14 C 1.53004 * 110.87212 * 82.76752 * 13 12 11 15 15 C 1.52993 * 110.72195 * 205.96645 * 13 12 11 16 16 N 1.46503 * 109.47521 * 293.52551 * 15 13 12 17 17 C 1.36932 * 120.00164 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00335 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00000 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99623 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00273 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47021 * 89.99520 * 21 19 17 23 23 H 1.48494 * 109.47363 * 209.99767 * 21 19 17 24 24 H 1.48508 * 109.46727 * 329.99881 * 21 19 17 25 25 C 1.47022 * 125.65071 * 179.97438 * 10 8 5 26 26 H 4.38443 * 5.44391 * 180.02562 * 4 1 2 27 27 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 28 28 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 29 29 H 1.08995 * 109.47088 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.46862 * 299.99976 * 7 5 4 31 31 H 1.08997 * 109.46936 * 59.99967 * 7 5 4 32 32 H 1.09003 * 110.36292 * 274.74232 * 11 10 8 33 33 H 1.09000 * 110.37015 * 37.07068 * 11 10 8 34 34 H 1.08993 * 111.19448 * 279.18645 * 12 11 10 35 35 H 1.08998 * 110.93916 * 155.28494 * 12 11 10 36 36 H 1.08999 * 109.47077 * 306.38866 * 14 13 12 37 37 H 1.08996 * 109.47412 * 66.38464 * 14 13 12 38 38 H 1.09001 * 109.47145 * 186.38963 * 14 13 12 39 39 H 1.09003 * 109.47107 * 53.52310 * 15 13 12 40 40 H 1.09005 * 109.47460 * 173.52240 * 15 13 12 41 41 H 0.97001 * 119.99595 * 359.97438 * 16 15 13 42 42 H 0.97005 * 119.99457 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.87904 * 300.44089 * 25 10 8 44 44 H 1.09001 * 109.87916 * 61.44755 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.8715 -1.0281 5 6 4.5464 0.9455 -1.1139 6 1 4.9795 -0.0010 -0.7906 7 6 5.0538 2.0729 -0.2124 8 6 4.9501 1.2219 -2.5393 9 8 4.1017 1.4335 -3.3797 10 7 6.2540 1.2340 -2.8802 11 6 7.3840 1.0004 -1.9626 12 6 8.5372 0.5064 -2.8752 13 6 8.3219 1.3752 -4.1426 14 6 8.9578 2.7562 -3.9714 15 6 8.8821 0.6735 -5.3814 16 7 10.3401 0.5809 -5.2729 17 6 11.0648 -0.0123 -6.2720 18 1 10.5615 -0.4122 -7.1398 19 6 12.4463 -0.1005 -6.1688 20 7 13.0596 0.3864 -5.1110 21 14 13.4348 -0.9103 -7.5313 22 1 13.8237 0.1121 -8.5355 23 1 14.6561 -1.5289 -6.9562 24 1 12.6102 -1.9580 -8.1854 25 6 6.7852 1.4879 -4.2273 26 1 -1.0502 -0.0001 0.0004 27 1 3.0092 0.3479 0.9672 28 1 3.0098 -1.0104 -0.1831 29 1 6.1403 2.1296 -0.2783 30 1 4.6206 3.0195 -0.5358 31 1 4.7618 1.8730 0.8185 32 1 7.6639 1.9273 -1.4619 33 1 7.1263 0.2354 -1.2303 34 1 8.4310 -0.5536 -3.1055 35 1 9.5073 0.7103 -2.4220 36 1 8.5877 3.2155 -3.0548 37 1 10.0413 2.6528 -3.9139 38 1 8.6974 3.3844 -4.8233 39 1 8.4588 -0.3283 -5.4541 40 1 8.6196 1.2443 -6.2722 41 1 10.7922 0.9404 -4.4936 42 1 14.0250 0.3244 -5.0387 43 1 6.3968 0.7458 -4.9249 44 1 6.5022 2.4883 -4.5549 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699839942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:04 Heat of formation + Delta-G solvation = -30.587148 kcal Electronic energy + Delta-G solvation = -23697.794010 eV Core-core repulsion = 20230.574301 eV Total energy + Delta-G solvation = -3467.219708 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54587 -39.80624 -38.56037 -36.52387 -34.68284 -34.22840 -32.57772 -31.70210 -30.50904 -28.09529 -27.97025 -27.31374 -25.38124 -24.11079 -23.58295 -20.62151 -20.19572 -19.55098 -19.14232 -18.20287 -17.61104 -17.10037 -16.90314 -16.47876 -16.41028 -15.62931 -15.50378 -15.30493 -15.04366 -14.81642 -14.45827 -14.14197 -13.85007 -13.72991 -13.45201 -13.37822 -13.14281 -13.00942 -12.86828 -12.82516 -12.62538 -12.36479 -12.13320 -12.08771 -11.73049 -11.62471 -11.56576 -11.50134 -11.39633 -10.92649 -10.91573 -10.48767 -9.72563 -8.95822 -7.93298 -5.20199 1.29258 1.49040 1.49659 1.49744 1.57976 1.80963 1.91472 2.57388 2.96877 3.27669 3.40346 3.56019 3.61174 3.66900 3.81948 3.89083 4.02151 4.21063 4.25052 4.26939 4.32392 4.39829 4.46076 4.60925 4.66938 4.71892 4.79291 4.81343 4.89027 4.97824 5.00842 5.04070 5.11723 5.20122 5.23238 5.25813 5.35487 5.49872 5.52321 5.98969 6.29731 6.45275 6.58834 7.06078 7.37607 8.12017 8.38794 9.29784 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035812 B = 0.002662 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.678042 B =10516.756360 C =10644.234730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.238 4.238 3 C 0.164 3.836 4 O -0.388 6.388 5 C 0.080 3.920 6 H 0.123 0.877 7 C -0.169 4.169 8 C 0.520 3.480 9 O -0.580 6.580 10 N -0.608 5.608 11 C 0.099 3.901 12 C -0.115 4.115 13 C -0.069 4.069 14 C -0.125 4.125 15 C 0.167 3.833 16 N -0.734 5.734 17 C -0.244 4.244 18 H 0.069 0.931 19 C -0.070 4.070 20 N -0.964 5.964 21 Si 0.968 3.032 22 H -0.289 1.289 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.125 3.875 26 H 0.252 0.748 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.017 0.983 40 H 0.014 0.986 41 H 0.380 0.620 42 H 0.251 0.749 43 H 0.055 0.945 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 1.023 16.428 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.239 4.239 3 C 0.089 3.911 4 O -0.308 6.308 5 C 0.020 3.980 6 H 0.140 0.860 7 C -0.227 4.227 8 C 0.310 3.690 9 O -0.459 6.459 10 N -0.342 5.342 11 C -0.023 4.023 12 C -0.153 4.153 13 C -0.070 4.070 14 C -0.183 4.183 15 C 0.040 3.960 16 N -0.378 5.378 17 C -0.376 4.376 18 H 0.087 0.913 19 C -0.263 4.263 20 N -0.614 5.614 21 Si 0.798 3.202 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.199 1.199 25 C 0.002 3.998 26 H 0.268 0.732 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.032 0.968 41 H 0.214 0.786 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.328 1.141 15.734 24.182 hybrid contribution 0.847 -0.389 -0.942 1.325 sum -17.480 0.753 14.793 22.912 Atomic orbital electron populations 1.25875 0.96946 0.98020 0.97485 1.23169 0.95120 1.02677 1.02890 1.19479 0.84538 0.94870 0.92232 1.88064 1.20225 1.66599 1.55878 1.21979 0.82249 1.02884 0.90935 0.85951 1.22324 1.03199 0.96994 1.00152 1.20777 0.80615 0.76550 0.91103 1.90700 1.50869 1.50889 1.53474 1.48471 1.05170 1.69649 1.10946 1.22813 0.84232 1.02725 0.92486 1.22821 0.99055 0.99247 0.94185 1.21610 0.92433 0.96958 0.95992 1.21686 1.00443 0.94178 1.01955 1.20686 0.84139 0.96267 0.94920 1.42442 1.01411 1.70696 1.23258 1.19567 0.89708 1.29146 0.99197 0.91269 1.25450 0.97557 1.03110 1.00183 1.69782 1.08339 1.52955 1.30373 0.85215 0.78160 0.78096 0.78725 1.21663 1.22036 1.19875 1.21841 0.92624 1.00923 0.84434 0.73189 0.87708 0.89104 0.88586 0.92885 0.88465 0.88399 0.87304 0.91322 0.89325 0.90618 0.93149 0.93086 0.96508 0.96760 0.78583 0.93972 0.92646 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 19.25 74.32 1.43 -1.26 16 2 C -0.24 -4.68 13.73 31.13 0.43 -4.25 16 3 C 0.16 2.59 6.22 70.18 0.44 3.03 16 4 O -0.39 -9.18 9.48 -129.99 -1.23 -10.42 16 5 C 0.08 1.46 2.48 29.85 0.07 1.53 16 6 H 0.12 1.36 7.27 -2.39 -0.02 1.35 16 7 C -0.17 -2.11 9.39 71.98 0.68 -1.43 16 8 C 0.52 14.26 7.24 87.66 0.63 14.90 16 9 O -0.58 -22.21 16.83 15.97 0.27 -21.94 16 10 N -0.61 -14.66 3.32 -811.34 -2.70 -17.36 16 11 C 0.10 1.69 5.02 86.93 0.44 2.12 16 12 C -0.12 -2.85 5.74 32.06 0.18 -2.67 16 13 C -0.07 -2.03 0.61 -51.00 -0.03 -2.06 16 14 C -0.13 -3.56 8.28 71.98 0.60 -2.97 16 15 C 0.17 6.50 5.08 86.38 0.44 6.94 16 16 N -0.73 -35.48 5.15 -343.45 -1.77 -37.25 16 17 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 18 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 20 N -0.96 -56.82 13.06 21.65 0.28 -56.54 16 21 Si 0.97 45.53 29.55 68.60 2.03 47.55 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 C 0.13 3.55 6.04 86.73 0.52 4.08 16 26 H 0.25 1.90 7.80 -4.41 -0.03 1.87 16 27 H 0.11 0.98 7.87 -2.39 -0.02 0.96 16 28 H 0.09 1.10 8.09 -2.39 -0.02 1.08 16 29 H 0.10 0.86 5.55 -2.39 -0.01 0.85 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.72 7.87 -2.39 -0.02 0.70 16 32 H 0.10 1.28 6.72 -2.39 -0.02 1.27 16 33 H 0.11 1.18 7.33 -2.39 -0.02 1.16 16 34 H 0.07 1.87 8.02 -2.39 -0.02 1.85 16 35 H 0.09 2.27 8.04 -2.39 -0.02 2.25 16 36 H 0.07 1.70 7.41 -2.39 -0.02 1.68 16 37 H 0.05 1.69 6.69 -2.39 -0.02 1.68 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.02 0.68 8.10 -2.39 -0.02 0.66 16 40 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 41 H 0.38 18.95 6.21 -92.71 -0.58 18.37 16 42 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 43 H 0.06 1.74 7.82 -2.38 -0.02 1.72 16 44 H 0.07 1.92 7.85 -2.39 -0.02 1.90 16 Total: -1.00 -76.38 362.50 4.42 -71.96 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.41 Total: 22.05 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 7.13 Total: 1.94 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -4.18 Total: -111.15 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.96 Total: -32.36 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -76.38 4.42 -71.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699839942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.374 kcal (2) G-P(sol) polarization free energy of solvation -76.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds