Wall clock time and date at job start Tue Mar 31 2020 07:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00422 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00022 * 180.02562 * 7 6 5 10 10 C 1.52994 * 109.47406 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46946 * 304.99853 * 10 9 7 12 12 C 1.53004 * 109.47483 * 64.99638 * 10 9 7 13 13 C 1.50702 * 109.47560 * 185.00103 * 10 9 7 14 14 C 1.34509 * 125.79162 * 119.71045 * 13 10 9 15 15 C 1.41381 * 106.83923 * 179.88768 * 14 13 10 16 16 C 1.34511 * 106.84223 * 0.37833 * 15 14 13 17 17 O 1.34306 * 125.78331 * 300.01923 * 13 10 9 18 18 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 19 19 C 1.36931 * 119.99788 * 274.99780 * 18 2 1 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 2 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 2 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99751 * 23 21 19 25 25 H 1.48490 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00028 * 23 21 19 27 27 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 29 29 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 30 30 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 31 31 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 32 32 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 33 33 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 34 34 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 35 35 H 1.09002 * 109.46729 * 299.99757 * 9 7 6 36 36 H 1.09003 * 109.47171 * 59.99555 * 9 7 6 37 37 H 1.09003 * 109.46908 * 300.00812 * 12 10 9 38 38 H 1.08997 * 109.46710 * 59.99933 * 12 10 9 39 39 H 1.08998 * 109.47188 * 180.02562 * 12 10 9 40 40 H 1.07997 * 126.57849 * 0.03106 * 14 13 10 41 41 H 1.08002 * 126.58270 * 180.16020 * 15 14 13 42 42 H 1.08000 * 125.79216 * 179.74735 * 16 15 14 43 43 H 0.97000 * 119.99792 * 94.99575 * 18 2 1 44 44 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 7 4.0532 -1.3037 -2.5100 7 6 5.3740 -1.3390 -2.7756 8 8 6.1583 -0.7991 -2.0245 9 6 5.8763 -2.0485 -4.0067 10 6 7.4011 -1.9408 -4.0710 11 1 7.6935 -0.8917 -4.0243 12 6 8.0160 -2.6947 -2.8901 13 6 7.8932 -2.5423 -5.3622 14 6 8.5818 -1.8951 -6.3194 15 6 8.8391 -2.8340 -7.3447 16 6 8.2851 -3.9966 -6.9564 17 8 7.7136 -3.8141 -5.7548 18 7 2.0183 -0.6906 1.1963 19 6 2.1491 -0.0075 2.3757 20 1 1.8919 1.0404 2.4243 21 6 2.6062 -0.6633 3.5106 22 7 2.9191 -1.9403 3.4515 23 14 2.7773 0.2668 5.1216 24 1 1.4532 0.8035 5.5263 25 1 3.2816 -0.6527 6.1728 26 1 3.7337 1.3892 4.9460 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 -0.3632 0.5139 -0.8901 30 1 1.7516 -1.7716 -1.2055 31 1 1.6055 -0.2618 -2.1369 32 1 3.8533 0.4368 -1.3573 33 1 3.9994 -1.0730 -0.4258 34 1 3.4258 -1.7352 -3.1109 35 1 5.5881 -3.0989 -3.9636 36 1 5.4414 -1.5885 -4.8941 37 1 7.6600 -2.2596 -1.9563 38 1 7.7236 -3.7436 -2.9369 39 1 9.1023 -2.6175 -2.9358 40 1 8.8826 -0.8580 -6.3062 41 1 9.3744 -2.6518 -8.2648 42 1 8.2974 -4.9202 -7.5161 43 1 2.2489 -1.6318 1.1527 44 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753017310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:46 Heat of formation + Delta-G solvation = -30.334767 kcal Electronic energy + Delta-G solvation = -23023.343270 eV Core-core repulsion = 19556.134506 eV Total energy + Delta-G solvation = -3467.208764 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.78670 -39.70868 -36.71152 -35.26887 -34.27127 -33.12452 -32.25371 -29.84593 -28.92597 -28.33336 -27.30652 -23.96344 -23.33402 -22.28099 -21.91679 -20.63622 -20.07715 -19.51358 -17.63431 -17.23244 -16.74745 -16.17603 -15.86777 -15.46200 -15.01889 -14.70137 -14.37970 -13.96580 -13.50309 -13.47397 -13.20271 -13.02687 -12.97206 -12.84815 -12.48750 -12.37698 -12.02211 -11.57929 -11.50976 -11.43242 -11.13492 -11.00505 -10.89181 -10.71812 -10.61164 -10.28645 -10.12968 -10.00319 -9.62606 -9.56243 -8.89743 -8.77636 -8.66163 -6.93318 -5.72953 -3.01590 1.53031 2.40679 2.77417 2.79308 3.34763 3.47241 3.51815 3.52496 4.40916 4.56638 4.62803 4.75996 4.82474 4.88564 5.03400 5.24989 5.34185 5.40817 5.47430 5.48842 5.58100 5.58555 5.69290 5.70240 5.82593 5.89471 5.93349 6.00746 6.08383 6.18933 6.28519 6.31668 6.36868 6.41109 6.51595 6.70486 6.73163 6.87808 6.94986 7.07387 7.65854 7.73396 8.38686 8.45438 9.56719 10.13397 10.48024 11.49647 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.002636 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.225403 B =10618.689165 C =11355.277894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.729 5.729 7 C 0.510 3.490 8 O -0.534 6.534 9 C -0.138 4.138 10 C 0.008 3.992 11 H 0.108 0.892 12 C -0.155 4.155 13 C 0.002 3.998 14 C -0.214 4.214 15 C -0.214 4.214 16 C -0.048 4.048 17 O -0.173 6.173 18 N -0.723 5.723 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.286 1.286 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.396 0.604 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.201 0.799 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.773 -2.820 -23.190 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.380 5.380 7 C 0.295 3.705 8 O -0.411 6.411 9 C -0.178 4.178 10 C -0.011 4.011 11 H 0.126 0.874 12 C -0.212 4.212 13 C -0.049 4.049 14 C -0.234 4.234 15 C -0.233 4.233 16 C -0.116 4.116 17 O -0.069 6.069 18 N -0.365 5.365 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.213 1.213 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.229 0.771 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.217 0.783 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.201 -2.519 -22.304 23.573 hybrid contribution -0.079 -0.027 0.304 0.315 sum 7.123 -2.546 -22.000 23.264 Atomic orbital electron populations 1.22427 0.99180 1.00814 0.99942 1.20153 0.91849 0.95575 0.86062 0.93319 1.22057 0.93986 1.01762 0.99288 1.21458 0.94371 0.97152 0.87160 1.46141 1.07249 1.57039 1.27551 1.20446 0.82516 0.80528 0.86972 1.90710 1.54970 1.45684 1.49765 1.21760 0.96086 1.02672 0.97319 1.19536 0.93333 1.00284 0.87965 0.87380 1.21997 1.00687 0.99900 0.98645 1.22552 1.02330 0.82044 0.97925 1.21628 1.05454 1.01297 0.94980 1.21824 1.06183 0.93536 1.01750 1.24019 1.00697 1.00774 0.86061 1.84019 1.61491 1.29385 1.31981 1.42442 1.78099 1.10633 1.05348 1.19174 1.36699 0.93772 0.87289 0.91282 1.24724 1.02206 0.95942 0.98014 1.69643 1.50963 1.08629 1.28896 0.86293 0.77706 0.78656 0.83692 1.21373 1.21755 1.21254 0.93539 0.92733 0.94601 0.91636 0.91986 0.91868 0.89707 0.77064 0.88438 0.88740 0.89231 0.92668 0.92477 0.83513 0.83611 0.78270 0.78298 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.17 3.31 2.89 -67.93 -0.20 3.11 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.98 4.87 -26.73 -0.13 -2.11 16 5 C 0.12 1.97 5.56 -4.04 -0.02 1.95 16 6 N -0.73 -9.37 5.56 -60.29 -0.33 -9.70 16 7 C 0.51 7.02 7.54 -10.98 -0.08 6.93 16 8 O -0.53 -9.57 13.97 5.56 0.08 -9.49 16 9 C -0.14 -1.39 5.16 -27.88 -0.14 -1.53 16 10 C 0.01 0.08 2.44 -91.77 -0.22 -0.14 16 11 H 0.11 1.19 7.91 -51.93 -0.41 0.78 16 12 C -0.16 -1.85 8.92 37.16 0.33 -1.52 16 13 C 0.00 0.02 5.83 -35.63 -0.21 -0.19 16 14 C -0.21 -2.10 10.78 -39.70 -0.43 -2.53 16 15 C -0.21 -1.83 10.91 -39.70 -0.43 -2.27 16 16 C -0.05 -0.40 12.09 29.41 0.36 -0.04 16 17 O -0.17 -1.83 10.65 5.69 0.06 -1.77 16 18 N -0.72 -17.66 4.57 -53.42 -0.24 -17.91 16 19 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 23 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.74 7.75 -51.93 -0.40 1.33 16 34 H 0.40 3.77 8.47 -40.82 -0.35 3.43 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.29 5.95 -51.93 -0.31 0.98 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 41 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.38 9.99 7.80 -40.82 -0.32 9.68 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -33.03 368.29 -7.51 -40.54 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.25 Total: 10.73 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.07 Total: -8.01 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.15 Total: -55.20 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.14 Total: -11.26 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.03 -7.51 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753017310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.207 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds