Wall clock time and date at job start Tue Mar 31 2020 07:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00422 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00022 * 180.02562 * 7 6 5 10 10 C 1.52994 * 109.47406 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46946 * 304.99853 * 10 9 7 12 12 C 1.53004 * 109.47483 * 64.99638 * 10 9 7 13 13 C 1.50702 * 109.47560 * 185.00103 * 10 9 7 14 14 C 1.34509 * 125.79162 * 119.71045 * 13 10 9 15 15 C 1.41381 * 106.83923 * 179.88768 * 14 13 10 16 16 C 1.34511 * 106.84223 * 0.37833 * 15 14 13 17 17 O 1.34306 * 125.78331 * 300.01923 * 13 10 9 18 18 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 19 19 C 1.36931 * 119.99788 * 274.99780 * 18 2 1 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 2 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 2 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99751 * 23 21 19 25 25 H 1.48490 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00028 * 23 21 19 27 27 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 29 29 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 30 30 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 31 31 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 32 32 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 33 33 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 34 34 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 35 35 H 1.09002 * 109.46729 * 299.99757 * 9 7 6 36 36 H 1.09003 * 109.47171 * 59.99555 * 9 7 6 37 37 H 1.09003 * 109.46908 * 300.00812 * 12 10 9 38 38 H 1.08997 * 109.46710 * 59.99933 * 12 10 9 39 39 H 1.08998 * 109.47188 * 180.02562 * 12 10 9 40 40 H 1.07997 * 126.57849 * 0.03106 * 14 13 10 41 41 H 1.08002 * 126.58270 * 180.16020 * 15 14 13 42 42 H 1.08000 * 125.79216 * 179.74735 * 16 15 14 43 43 H 0.97000 * 119.99792 * 94.99575 * 18 2 1 44 44 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 7 4.0532 -1.3037 -2.5100 7 6 5.3740 -1.3390 -2.7756 8 8 6.1583 -0.7991 -2.0245 9 6 5.8763 -2.0485 -4.0067 10 6 7.4011 -1.9408 -4.0710 11 1 7.6935 -0.8917 -4.0243 12 6 8.0160 -2.6947 -2.8901 13 6 7.8932 -2.5423 -5.3622 14 6 8.5818 -1.8951 -6.3194 15 6 8.8391 -2.8340 -7.3447 16 6 8.2851 -3.9966 -6.9564 17 8 7.7136 -3.8141 -5.7548 18 7 2.0183 -0.6906 1.1963 19 6 2.1491 -0.0075 2.3757 20 1 1.8919 1.0404 2.4243 21 6 2.6062 -0.6633 3.5106 22 7 2.9191 -1.9403 3.4515 23 14 2.7773 0.2668 5.1216 24 1 1.4532 0.8035 5.5263 25 1 3.2816 -0.6527 6.1728 26 1 3.7337 1.3892 4.9460 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 -0.3632 0.5139 -0.8901 30 1 1.7516 -1.7716 -1.2055 31 1 1.6055 -0.2618 -2.1369 32 1 3.8533 0.4368 -1.3573 33 1 3.9994 -1.0730 -0.4258 34 1 3.4258 -1.7352 -3.1109 35 1 5.5881 -3.0989 -3.9636 36 1 5.4414 -1.5885 -4.8941 37 1 7.6600 -2.2596 -1.9563 38 1 7.7236 -3.7436 -2.9369 39 1 9.1023 -2.6175 -2.9358 40 1 8.8826 -0.8580 -6.3062 41 1 9.3744 -2.6518 -8.2648 42 1 8.2974 -4.9202 -7.5161 43 1 2.2489 -1.6318 1.1527 44 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753017310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:45 Heat of formation + Delta-G solvation = -52.254401 kcal Electronic energy + Delta-G solvation = -23024.293777 eV Core-core repulsion = 19556.134506 eV Total energy + Delta-G solvation = -3468.159271 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.47990 -40.85214 -38.20439 -36.31895 -35.62824 -34.13004 -33.80702 -31.29370 -30.18740 -29.46684 -28.38638 -25.84528 -24.51657 -23.40657 -22.63518 -21.82897 -21.15665 -20.65208 -19.26681 -18.42200 -17.69351 -17.11019 -16.92552 -16.69699 -16.56750 -15.86179 -15.58268 -15.35537 -15.20419 -14.69217 -14.33554 -14.11994 -14.02837 -13.69261 -13.56219 -13.48619 -13.33216 -13.19472 -12.78697 -12.62472 -12.52290 -12.32038 -12.25889 -12.21223 -12.07826 -11.97436 -11.62300 -11.58500 -10.94336 -10.81317 -10.75301 -10.02745 -9.35326 -8.96926 -7.91910 -5.18485 0.83748 1.45970 1.48995 1.54452 1.67708 1.74028 2.08968 2.30351 2.57657 3.42103 3.60396 3.70877 3.93409 3.98106 4.02501 4.09067 4.17888 4.26287 4.32752 4.40101 4.43177 4.62115 4.68043 4.69948 4.79199 4.86940 4.92252 4.94487 5.04281 5.05667 5.12355 5.13959 5.20065 5.25091 5.35951 5.41330 5.53980 5.55053 5.62812 5.64815 6.26303 6.31082 6.62377 7.33431 7.37031 8.15392 8.36552 9.31486 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.002636 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.225403 B =10618.689165 C =11355.277894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.042 0.958 4 C -0.116 4.116 5 C 0.133 3.867 6 N -0.715 5.715 7 C 0.505 3.495 8 O -0.582 6.582 9 C -0.125 4.125 10 C 0.011 3.989 11 H 0.101 0.899 12 C -0.151 4.151 13 C -0.016 4.016 14 C -0.221 4.221 15 C -0.227 4.227 16 C -0.044 4.044 17 O -0.188 6.188 18 N -0.735 5.735 19 C -0.233 4.233 20 H 0.073 0.927 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.966 3.034 24 H -0.277 1.277 25 H -0.298 1.298 26 H -0.282 1.282 27 H 0.044 0.956 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.417 0.583 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.235 0.765 43 H 0.371 0.629 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -2.739 -26.005 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 H 0.060 0.940 4 C -0.154 4.154 5 C 0.008 3.992 6 N -0.368 5.368 7 C 0.293 3.707 8 O -0.462 6.462 9 C -0.165 4.165 10 C -0.008 4.008 11 H 0.119 0.881 12 C -0.208 4.208 13 C -0.066 4.066 14 C -0.240 4.240 15 C -0.246 4.246 16 C -0.111 4.111 17 O -0.084 6.084 18 N -0.376 5.376 19 C -0.365 4.365 20 H 0.091 0.909 21 C -0.271 4.271 22 N -0.621 5.621 23 Si 0.796 3.204 24 H -0.203 1.203 25 H -0.224 1.224 26 H -0.208 1.208 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.254 0.746 35 H 0.130 0.870 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.172 0.828 41 H 0.184 0.816 42 H 0.252 0.748 43 H 0.203 0.797 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.333 -2.413 -25.183 26.079 hybrid contribution 0.198 -0.025 1.051 1.070 sum 6.531 -2.438 -24.132 25.118 Atomic orbital electron populations 1.22264 0.97189 1.01019 1.00839 1.20467 0.93119 0.95196 0.85754 0.94010 1.21907 0.92660 1.01994 0.98823 1.21075 0.95230 0.96126 0.86720 1.45939 1.07606 1.56561 1.26658 1.21164 0.82218 0.79806 0.87508 1.90700 1.56169 1.47746 1.51574 1.21730 0.95563 1.03101 0.96066 1.19399 0.93774 0.99755 0.87841 0.88070 1.21914 1.00936 0.99992 0.97993 1.22366 1.03763 0.82472 0.97969 1.21915 1.04845 1.02028 0.95222 1.22150 1.06668 0.93380 1.02357 1.24785 0.99156 1.02025 0.85121 1.84006 1.62062 1.29285 1.33065 1.42643 1.78386 1.10217 1.06307 1.19561 1.34532 0.94030 0.88419 0.90866 1.25490 1.03396 0.96859 1.01320 1.69800 1.53007 1.10119 1.29200 0.85308 0.77918 0.77312 0.79857 1.20282 1.22406 1.20837 0.93656 0.94936 0.90578 0.91066 0.87680 0.93144 0.94720 0.74636 0.86951 0.85924 0.92161 0.92339 0.92204 0.82759 0.81571 0.74838 0.79664 0.94286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 9.49 71.98 0.68 -4.31 16 2 C 0.16 6.04 2.89 44.99 0.13 6.17 16 3 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 4 C -0.12 -3.24 4.87 30.59 0.15 -3.09 16 5 C 0.13 4.32 5.56 86.38 0.48 4.80 16 6 N -0.72 -17.58 5.56 -463.06 -2.57 -20.16 16 7 C 0.51 13.79 7.54 87.66 0.66 14.45 16 8 O -0.58 -21.70 13.97 -3.03 -0.04 -21.75 16 9 C -0.13 -2.33 5.16 29.85 0.15 -2.17 16 10 C 0.01 0.23 2.44 -11.54 -0.03 0.21 16 11 H 0.10 2.26 7.91 -2.38 -0.02 2.24 16 12 C -0.15 -3.71 8.92 71.98 0.64 -3.07 16 13 C -0.02 -0.31 5.83 24.83 0.14 -0.17 16 14 C -0.22 -3.99 10.78 22.19 0.24 -3.75 16 15 C -0.23 -3.34 10.91 22.19 0.24 -3.10 16 16 C -0.04 -0.61 12.09 66.97 0.81 0.20 16 17 O -0.19 -3.60 10.65 -2.55 -0.03 -3.63 16 18 N -0.73 -36.44 4.57 -322.93 -1.48 -37.92 16 19 C -0.23 -13.05 9.93 84.04 0.83 -12.22 16 20 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 22 N -0.97 -60.67 13.06 21.65 0.28 -60.38 16 23 Si 0.97 47.46 29.55 68.60 2.03 49.49 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 26 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.03 1.49 7.75 -2.39 -0.02 1.47 16 34 H 0.42 6.78 8.47 -92.71 -0.79 6.00 16 35 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.85 5.95 -2.39 -0.01 1.83 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 40 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.24 1.24 8.06 -2.91 -0.02 1.21 16 43 H 0.37 19.94 7.80 -92.71 -0.72 19.22 16 44 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -74.70 368.29 3.28 -71.42 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.52 Total: 33.10 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.61 Total: -10.18 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -3.77 Total: -118.45 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.07 Total: -25.38 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -74.70 3.28 -71.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753017310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.167 kcal (2) G-P(sol) polarization free energy of solvation -74.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds