Wall clock time and date at job start Tue Mar 31 2020 07:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46761 * 292.74256 * 3 2 1 5 5 C 1.42901 * 113.99751 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.47103 * 29.99479 * 5 4 3 7 7 C 1.52999 * 109.46998 * 269.99988 * 5 4 3 8 8 C 1.50696 * 109.47149 * 149.99536 * 5 4 3 9 9 O 1.21284 * 120.00233 * 5.00396 * 8 5 4 10 10 N 1.34782 * 120.00047 * 184.99910 * 8 5 4 11 11 C 1.46496 * 119.99972 * 180.02562 * 10 8 5 12 12 H 1.09002 * 109.46997 * 324.99405 * 11 10 8 13 13 C 1.52994 * 109.47471 * 85.00064 * 11 10 8 14 14 C 1.52996 * 109.46988 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47401 * 299.99683 * 14 13 11 16 16 H 1.09002 * 109.46728 * 300.00119 * 15 14 13 17 17 N 1.46496 * 109.47588 * 180.02562 * 15 14 13 18 18 C 1.36934 * 120.00548 * 84.99655 * 17 15 14 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.52998 * 109.47111 * 60.00068 * 15 14 13 27 27 C 1.53006 * 109.46938 * 300.00219 * 26 15 14 28 28 H 4.38446 * 5.44406 * 179.97438 * 4 1 2 29 29 H 1.08992 * 109.46964 * 172.73877 * 3 2 1 30 30 H 1.09000 * 109.46860 * 52.74127 * 3 2 1 31 31 H 1.09002 * 109.47393 * 59.99819 * 7 5 4 32 32 H 1.08999 * 109.47009 * 179.97438 * 7 5 4 33 33 H 1.08995 * 109.47205 * 299.99853 * 7 5 4 34 34 H 0.96998 * 119.99671 * 0.02562 * 10 8 5 35 35 H 1.09007 * 109.46892 * 299.99783 * 13 11 10 36 36 H 1.08994 * 109.47221 * 59.99710 * 13 11 10 37 37 H 1.09005 * 109.47402 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.47911 * 59.99788 * 14 13 11 39 39 H 0.96999 * 119.99694 * 265.00179 * 17 15 14 40 40 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.46632 * 60.00036 * 26 15 14 42 42 H 1.08994 * 109.47416 * 180.02562 * 26 15 14 43 43 H 1.09001 * 109.46914 * 179.97438 * 27 26 15 44 44 H 1.08994 * 109.47411 * 299.99862 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.5200 1.2426 5 6 4.5471 -0.5625 1.3469 6 1 4.9790 0.2438 0.7539 7 6 5.0567 -1.9079 0.8263 8 6 4.9503 -0.3966 2.7894 9 8 4.1017 -0.3470 3.6545 10 7 6.2541 -0.3035 3.1183 11 6 6.6460 -0.1428 4.5207 12 1 5.9063 0.4691 5.0369 13 6 6.7269 -1.5170 5.1884 14 6 7.1356 -1.3490 6.6531 15 6 8.5025 -0.6654 6.7260 16 1 9.2426 -1.2772 6.2101 17 7 8.8942 -0.5051 8.1285 18 6 9.5185 -1.5309 8.7867 19 1 9.7224 -2.4580 8.2716 20 6 9.8891 -1.3791 10.1157 21 7 10.4896 -2.3649 10.7482 22 14 9.5370 0.2248 11.0063 23 1 10.6883 1.1474 10.8383 24 1 8.3154 0.8489 10.4375 25 1 9.3272 -0.0470 12.4511 26 6 8.4218 0.7088 6.0583 27 6 8.0130 0.5408 4.5935 28 1 -1.0499 0.0001 0.0002 29 1 3.0089 1.0202 -0.1299 30 1 3.0096 -0.6214 -0.8179 31 1 4.7650 -2.0278 -0.2171 32 1 6.1433 -1.9401 0.9054 33 1 4.6248 -2.7140 1.4192 34 1 6.9327 -0.3428 2.4264 35 1 5.7529 -2.0038 5.1368 36 1 7.4666 -2.1288 4.6722 37 1 7.1928 -2.3280 7.1290 38 1 6.3956 -0.7373 7.1691 39 1 8.7113 0.3277 8.5910 40 1 10.7490 -2.2587 11.6769 41 1 7.6816 1.3204 6.5743 42 1 9.3956 1.1956 6.1099 43 1 7.9550 1.5199 4.1179 44 1 8.7530 -0.0708 4.0776 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753581003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:47 Heat of formation + Delta-G solvation = -24.518159 kcal Electronic energy + Delta-G solvation = -23323.523118 eV Core-core repulsion = 19856.566581 eV Total energy + Delta-G solvation = -3466.956537 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.35483 -38.70755 -37.63089 -34.98251 -33.88196 -33.15545 -31.72372 -30.72255 -30.48087 -27.74515 -27.52198 -24.62071 -23.12709 -22.45831 -21.05306 -20.47088 -19.69288 -19.00486 -17.70352 -17.42138 -17.15300 -16.18595 -15.81302 -15.33541 -15.02553 -14.81950 -14.35747 -13.90974 -13.82331 -13.61110 -13.32582 -12.98175 -12.88915 -12.66914 -12.59005 -12.16577 -11.97688 -11.83564 -11.73343 -11.17042 -11.04729 -10.94299 -10.87758 -10.86922 -10.64658 -10.25303 -10.18552 -10.12989 -9.81796 -9.62581 -9.54235 -9.03269 -8.86597 -7.23822 -5.74698 -3.09872 1.99924 2.42660 2.47929 2.88018 3.39756 3.43064 3.47548 3.62730 4.12881 4.36530 4.48407 4.60253 4.61534 4.71850 4.83010 4.92937 4.95978 5.11541 5.15263 5.26006 5.47363 5.51635 5.52582 5.55470 5.62200 5.69718 5.77088 5.79696 5.93280 6.10362 6.17791 6.19366 6.36655 6.45719 6.50568 6.60256 6.66757 6.90855 7.06673 7.19039 7.37852 8.02070 8.11621 8.44678 9.23519 9.96314 10.16287 11.43705 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035018 B = 0.002542 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.388319 B =11013.330560 C =11153.542294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.195 4.195 3 C 0.171 3.829 4 O -0.351 6.351 5 C 0.071 3.929 6 H 0.089 0.911 7 C -0.172 4.172 8 C 0.512 3.488 9 O -0.515 6.515 10 N -0.723 5.723 11 C 0.146 3.854 12 H 0.087 0.913 13 C -0.124 4.124 14 C -0.133 4.133 15 C 0.182 3.818 16 H 0.055 0.945 17 N -0.750 5.750 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.277 1.277 25 H -0.292 1.292 26 C -0.124 4.124 27 C -0.118 4.118 28 H 0.222 0.778 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.397 0.603 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 6.284 -26.516 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.195 4.195 3 C 0.095 3.905 4 O -0.269 6.269 5 C 0.010 3.990 6 H 0.106 0.894 7 C -0.229 4.229 8 C 0.296 3.704 9 O -0.389 6.389 10 N -0.376 5.376 11 C 0.042 3.958 12 H 0.105 0.895 13 C -0.163 4.163 14 C -0.174 4.174 15 C 0.072 3.928 16 H 0.073 0.927 17 N -0.392 5.392 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.212 1.212 24 H -0.203 1.203 25 H -0.218 1.218 26 C -0.163 4.163 27 C -0.156 4.156 28 H 0.239 0.761 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.231 0.769 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.364 6.042 -25.649 29.107 hybrid contribution 0.035 1.071 0.238 1.098 sum -12.329 7.113 -25.410 29.125 Atomic orbital electron populations 1.24994 0.95919 1.00024 0.97710 1.22412 0.93808 1.01129 1.02147 1.19174 0.85133 0.98922 0.87271 1.88146 1.18975 1.84450 1.35342 1.21944 0.82913 0.99412 0.94755 0.89353 1.22251 1.01895 0.96601 1.02194 1.20273 0.82929 0.76972 0.90223 1.90759 1.50100 1.47602 1.50392 1.46069 1.06667 1.74989 1.09852 1.21130 0.96841 0.97696 0.80128 0.89463 1.21892 1.01344 0.95847 0.97244 1.22191 0.99310 1.02348 0.93515 1.20218 0.93715 0.93171 0.85664 0.92673 1.42798 1.71830 1.16132 1.08398 1.19075 1.29347 0.94657 0.93984 0.89238 1.24680 1.00705 0.97272 0.96667 1.69705 1.46075 1.31377 1.11144 0.86546 0.78042 0.84514 0.79420 1.21157 1.20285 1.21822 1.21794 1.01563 0.99176 0.93782 1.21733 0.95437 1.00184 0.98275 0.76080 0.90653 0.90593 0.91155 0.90585 0.90790 0.76878 0.92183 0.92051 0.91293 0.92610 0.80704 0.93121 0.92082 0.91232 0.91787 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 19.25 29.55 0.57 -0.83 16 2 C -0.19 -1.89 13.73 -37.12 -0.51 -2.39 16 3 C 0.17 1.34 6.22 34.37 0.21 1.55 16 4 O -0.35 -3.97 9.48 -55.09 -0.52 -4.49 16 5 C 0.07 0.60 3.13 -27.89 -0.09 0.51 16 6 H 0.09 0.45 7.79 -51.93 -0.40 0.04 16 7 C -0.17 -1.09 9.48 37.16 0.35 -0.73 16 8 C 0.51 6.18 7.14 -10.98 -0.08 6.10 16 9 O -0.51 -8.97 16.17 -14.31 -0.23 -9.20 16 10 N -0.72 -7.08 5.04 -53.81 -0.27 -7.35 16 11 C 0.15 1.81 2.45 -67.93 -0.17 1.64 16 12 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 13 C -0.12 -1.78 5.49 -26.74 -0.15 -1.92 16 14 C -0.13 -2.35 5.50 -26.73 -0.15 -2.49 16 15 C 0.18 3.37 2.77 -67.93 -0.19 3.18 16 16 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 17 N -0.75 -17.57 4.93 -53.43 -0.26 -17.84 16 18 C -0.24 -6.76 10.41 -15.06 -0.16 -6.91 16 19 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 20 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 21 N -0.94 -29.49 13.97 55.49 0.78 -28.71 16 22 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 23 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 26 C -0.12 -1.82 5.39 -26.73 -0.14 -1.96 16 27 C -0.12 -1.31 5.39 -26.72 -0.14 -1.45 16 28 H 0.22 0.99 7.80 -54.09 -0.42 0.57 16 29 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.08 0.39 7.87 -51.93 -0.41 -0.02 16 31 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 32 H 0.08 0.34 7.93 -51.93 -0.41 -0.07 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.40 2.48 8.39 -40.82 -0.34 2.14 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.36 8.35 5.66 -40.82 -0.23 8.12 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -36.44 366.62 -7.69 -44.13 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.26 Total: 6.10 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -0.73 Total: -5.74 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.24 Total: -53.90 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.75 Total: -13.69 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.44 -7.69 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753581003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.615 kcal (2) G-P(sol) polarization free energy of solvation -36.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds