Wall clock time and date at job start Tue Mar 31 2020 07:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46761 * 292.74256 * 3 2 1 5 5 C 1.42901 * 113.99751 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.47103 * 29.99479 * 5 4 3 7 7 C 1.52999 * 109.46998 * 269.99988 * 5 4 3 8 8 C 1.50696 * 109.47149 * 149.99536 * 5 4 3 9 9 O 1.21284 * 120.00233 * 5.00396 * 8 5 4 10 10 N 1.34782 * 120.00047 * 184.99910 * 8 5 4 11 11 C 1.46496 * 119.99972 * 180.02562 * 10 8 5 12 12 H 1.09002 * 109.46997 * 324.99405 * 11 10 8 13 13 C 1.52994 * 109.47471 * 85.00064 * 11 10 8 14 14 C 1.52996 * 109.46988 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47401 * 299.99683 * 14 13 11 16 16 H 1.09002 * 109.46728 * 300.00119 * 15 14 13 17 17 N 1.46496 * 109.47588 * 180.02562 * 15 14 13 18 18 C 1.36934 * 120.00548 * 84.99655 * 17 15 14 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.52998 * 109.47111 * 60.00068 * 15 14 13 27 27 C 1.53006 * 109.46938 * 300.00219 * 26 15 14 28 28 H 4.38446 * 5.44406 * 179.97438 * 4 1 2 29 29 H 1.08992 * 109.46964 * 172.73877 * 3 2 1 30 30 H 1.09000 * 109.46860 * 52.74127 * 3 2 1 31 31 H 1.09002 * 109.47393 * 59.99819 * 7 5 4 32 32 H 1.08999 * 109.47009 * 179.97438 * 7 5 4 33 33 H 1.08995 * 109.47205 * 299.99853 * 7 5 4 34 34 H 0.96998 * 119.99671 * 0.02562 * 10 8 5 35 35 H 1.09007 * 109.46892 * 299.99783 * 13 11 10 36 36 H 1.08994 * 109.47221 * 59.99710 * 13 11 10 37 37 H 1.09005 * 109.47402 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.47911 * 59.99788 * 14 13 11 39 39 H 0.96999 * 119.99694 * 265.00179 * 17 15 14 40 40 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.46632 * 60.00036 * 26 15 14 42 42 H 1.08994 * 109.47416 * 180.02562 * 26 15 14 43 43 H 1.09001 * 109.46914 * 179.97438 * 27 26 15 44 44 H 1.08994 * 109.47411 * 299.99862 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.5200 1.2426 5 6 4.5471 -0.5625 1.3469 6 1 4.9790 0.2438 0.7539 7 6 5.0567 -1.9079 0.8263 8 6 4.9503 -0.3966 2.7894 9 8 4.1017 -0.3470 3.6545 10 7 6.2541 -0.3035 3.1183 11 6 6.6460 -0.1428 4.5207 12 1 5.9063 0.4691 5.0369 13 6 6.7269 -1.5170 5.1884 14 6 7.1356 -1.3490 6.6531 15 6 8.5025 -0.6654 6.7260 16 1 9.2426 -1.2772 6.2101 17 7 8.8942 -0.5051 8.1285 18 6 9.5185 -1.5309 8.7867 19 1 9.7224 -2.4580 8.2716 20 6 9.8891 -1.3791 10.1157 21 7 10.4896 -2.3649 10.7482 22 14 9.5370 0.2248 11.0063 23 1 10.6883 1.1474 10.8383 24 1 8.3154 0.8489 10.4375 25 1 9.3272 -0.0470 12.4511 26 6 8.4218 0.7088 6.0583 27 6 8.0130 0.5408 4.5935 28 1 -1.0499 0.0001 0.0002 29 1 3.0089 1.0202 -0.1299 30 1 3.0096 -0.6214 -0.8179 31 1 4.7650 -2.0278 -0.2171 32 1 6.1433 -1.9401 0.9054 33 1 4.6248 -2.7140 1.4192 34 1 6.9327 -0.3428 2.4264 35 1 5.7529 -2.0038 5.1368 36 1 7.4666 -2.1288 4.6722 37 1 7.1928 -2.3280 7.1290 38 1 6.3956 -0.7373 7.1691 39 1 8.7113 0.3277 8.5910 40 1 10.7490 -2.2587 11.6769 41 1 7.6816 1.3204 6.5743 42 1 9.3956 1.1956 6.1099 43 1 7.9550 1.5199 4.1179 44 1 8.7530 -0.0708 4.0776 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753581003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:46 Heat of formation + Delta-G solvation = -50.478328 kcal Electronic energy + Delta-G solvation = -23324.648836 eV Core-core repulsion = 19856.566581 eV Total energy + Delta-G solvation = -3468.082255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28107 -39.70765 -38.64088 -36.45088 -34.81133 -34.35830 -33.09238 -31.98443 -31.69655 -29.15411 -28.07149 -25.70780 -24.66812 -23.66354 -22.38456 -21.42187 -21.04379 -19.74052 -19.45430 -18.27069 -17.96614 -17.04327 -16.78668 -16.53108 -16.28634 -15.92926 -15.68813 -15.09395 -15.00633 -14.73097 -14.57414 -14.34921 -13.96696 -13.69678 -13.50190 -13.35124 -13.16229 -13.10228 -12.90057 -12.47779 -12.38222 -12.28155 -12.04827 -11.98505 -11.79180 -11.71101 -11.56632 -11.46568 -11.20840 -10.91438 -10.85328 -10.42763 -10.04515 -9.29146 -8.01262 -5.33897 1.35474 1.37935 1.41204 1.48352 1.58616 1.80593 2.09254 2.49225 3.04369 3.29461 3.51581 3.62653 3.71997 3.79086 3.86561 3.94782 4.08136 4.25730 4.25935 4.33071 4.36494 4.47724 4.52607 4.58962 4.62946 4.72574 4.81853 4.86531 4.95097 5.00818 5.11985 5.14633 5.24337 5.24566 5.26901 5.47801 5.51855 5.60567 5.79544 6.02088 6.23628 6.58393 6.61536 7.09787 7.28696 7.87335 8.05556 9.20360 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035018 B = 0.002542 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.388319 B =11013.330560 C =11153.542294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.238 4.238 3 C 0.164 3.836 4 O -0.391 6.391 5 C 0.074 3.926 6 H 0.132 0.868 7 C -0.168 4.168 8 C 0.506 3.494 9 O -0.578 6.578 10 N -0.703 5.703 11 C 0.152 3.848 12 H 0.063 0.937 13 C -0.113 4.113 14 C -0.126 4.126 15 C 0.175 3.825 16 H 0.050 0.950 17 N -0.754 5.754 18 C -0.225 4.225 19 H 0.056 0.944 20 C -0.069 4.069 21 N -0.986 5.986 22 Si 0.955 3.045 23 H -0.274 1.274 24 H -0.255 1.255 25 H -0.299 1.299 26 C -0.118 4.118 27 C -0.105 4.105 28 H 0.250 0.750 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.420 0.580 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.044 0.956 39 H 0.364 0.636 40 H 0.256 0.744 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 8.558 -29.603 32.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.238 4.238 3 C 0.090 3.910 4 O -0.311 6.311 5 C 0.014 3.986 6 H 0.149 0.851 7 C -0.225 4.225 8 C 0.292 3.708 9 O -0.457 6.457 10 N -0.357 5.357 11 C 0.047 3.953 12 H 0.082 0.918 13 C -0.153 4.153 14 C -0.166 4.166 15 C 0.067 3.933 16 H 0.068 0.932 17 N -0.396 5.396 18 C -0.356 4.356 19 H 0.074 0.926 20 C -0.260 4.260 21 N -0.636 5.636 22 Si 0.783 3.217 23 H -0.200 1.200 24 H -0.180 1.180 25 H -0.226 1.226 26 C -0.156 4.156 27 C -0.143 4.143 28 H 0.266 0.734 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.258 0.742 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.197 0.803 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.206 8.338 -28.835 32.403 hybrid contribution -0.066 0.267 1.123 1.156 sum -12.272 8.605 -27.712 31.505 Atomic orbital electron populations 1.25868 0.97007 0.99192 0.96652 1.23249 0.95261 1.02082 1.03190 1.19489 0.84294 1.00507 0.86753 1.88092 1.20628 1.84998 1.37373 1.22101 0.82184 1.02010 0.92341 0.85072 1.22271 1.03105 0.94288 1.02846 1.21107 0.82734 0.75381 0.91533 1.90734 1.51885 1.50559 1.52498 1.45811 1.06797 1.73786 1.09262 1.20864 0.97319 0.95783 0.81319 0.91841 1.21763 1.00647 0.97656 0.95200 1.22023 0.98780 1.00117 0.95723 1.20489 0.93331 0.96044 0.83413 0.93194 1.42860 1.71491 1.15006 1.10278 1.19037 1.28054 0.94502 0.93993 0.92553 1.25517 1.01525 1.01187 0.97781 1.69890 1.48346 1.34005 1.11406 0.85399 0.78888 0.80093 0.77330 1.20044 1.18019 1.22639 1.21708 1.02192 0.96019 0.95724 1.21658 0.94485 1.02119 0.96039 0.73397 0.88715 0.87859 0.88867 0.88235 0.93528 0.74184 0.93910 0.90469 0.94608 0.93727 0.80301 0.93485 0.92199 0.90432 0.88709 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 19.25 74.32 1.43 -1.23 16 2 C -0.24 -4.39 13.73 31.13 0.43 -3.97 16 3 C 0.16 2.25 6.22 70.18 0.44 2.69 16 4 O -0.39 -8.39 9.48 -129.99 -1.23 -9.63 16 5 C 0.07 1.06 3.13 29.85 0.09 1.15 16 6 H 0.13 0.72 7.79 -2.38 -0.02 0.70 16 7 C -0.17 -1.62 9.48 71.98 0.68 -0.94 16 8 C 0.51 11.47 7.14 87.65 0.63 12.10 16 9 O -0.58 -20.47 16.17 15.95 0.26 -20.21 16 10 N -0.70 -11.73 5.04 -442.53 -2.23 -13.96 16 11 C 0.15 3.47 2.45 44.99 0.11 3.58 16 12 H 0.06 1.81 7.58 -2.39 -0.02 1.80 16 13 C -0.11 -3.19 5.49 30.59 0.17 -3.03 16 14 C -0.13 -4.52 5.50 30.59 0.17 -4.36 16 15 C 0.17 6.37 2.77 44.99 0.12 6.49 16 16 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 17 N -0.75 -35.16 4.93 -322.95 -1.59 -36.75 16 18 C -0.22 -12.90 10.41 84.03 0.87 -12.02 16 19 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 20 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 21 N -0.99 -64.08 13.97 21.65 0.30 -63.78 16 22 Si 0.96 46.32 27.74 68.60 1.90 48.23 16 23 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.26 -11.33 6.52 99.48 0.65 -10.68 16 25 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 26 C -0.12 -3.13 5.39 30.60 0.17 -2.96 16 27 C -0.10 -1.92 5.39 30.60 0.17 -1.75 16 28 H 0.25 1.84 7.80 -4.42 -0.03 1.81 16 29 H 0.10 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.10 0.76 7.87 -2.39 -0.02 0.74 16 31 H 0.09 0.50 7.87 -2.39 -0.02 0.48 16 32 H 0.10 0.47 7.93 -2.39 -0.02 0.45 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.42 3.29 8.39 -92.71 -0.78 2.51 16 35 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.48 8.14 -2.38 -0.02 1.47 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.36 16.37 5.66 -92.71 -0.52 15.85 16 40 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -84.93 366.62 2.97 -81.96 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.38 Total: 22.06 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 5.94 Total: -7.92 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -3.52 Total: -114.48 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.97 Total: -29.84 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.23 kcal Total: -84.93 2.97 -81.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753581003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.481 kcal (2) G-P(sol) polarization free energy of solvation -84.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds