Wall clock time and date at job start Tue Mar 31 2020 07:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 N 1.46506 * 109.46916 * 64.99869 * 4 2 1 6 6 C 1.36935 * 119.99911 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00226 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99846 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00275 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00062 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46963 * 89.99503 * 10 8 6 12 12 H 1.48492 * 109.47321 * 209.99941 * 10 8 6 13 13 H 1.48508 * 109.46965 * 329.99839 * 10 8 6 14 14 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 15 15 N 1.46499 * 109.46840 * 294.99527 * 14 2 1 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 2 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47084 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.47459 * 54.99614 * 19 18 16 21 21 C 1.53003 * 109.46992 * 294.99678 * 19 18 16 22 22 C 1.50703 * 109.47000 * 175.00027 * 19 18 16 23 23 C 1.34511 * 125.78639 * 239.99602 * 22 19 18 24 24 C 1.41378 * 106.83925 * 180.02562 * 23 22 19 25 25 C 1.34511 * 106.84277 * 359.97438 * 24 23 22 26 26 O 1.34301 * 125.78892 * 59.69176 * 22 19 18 27 27 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 28 28 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 29 29 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 31 31 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 32 32 H 0.96999 * 119.99735 * 0.02562 * 5 4 2 33 33 H 0.96997 * 120.00544 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47398 * 54.99853 * 14 2 1 35 35 H 1.09001 * 109.47194 * 175.00033 * 14 2 1 36 36 H 0.97000 * 120.00420 * 0.02562 * 15 14 2 37 37 H 1.09002 * 109.47152 * 300.00160 * 18 16 15 38 38 H 1.09001 * 109.46980 * 60.00059 * 18 16 15 39 39 H 1.08993 * 109.47618 * 300.00236 * 21 19 18 40 40 H 1.09002 * 109.47201 * 60.00376 * 21 19 18 41 41 H 1.09004 * 109.47134 * 180.02562 * 21 19 18 42 42 H 1.08005 * 126.58267 * 359.96593 * 23 22 19 43 43 H 1.08008 * 126.58067 * 180.02562 * 24 23 22 44 44 H 1.08007 * 125.79337 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.6524 0.0352 -2.4424 6 6 2.0019 -0.4205 -3.6855 7 1 2.5630 -1.3378 -3.7864 8 6 1.6351 0.2966 -4.8160 9 7 0.9510 1.4143 -4.6932 10 14 2.1125 -0.3246 -6.5118 11 1 1.0430 -1.2136 -7.0325 12 1 2.2881 0.8289 -7.4303 13 1 3.3860 -1.0832 -6.4207 14 6 2.0400 -0.7213 1.2493 15 7 1.6525 0.0354 2.4423 16 6 1.9964 -0.4130 3.6659 17 8 2.6263 -1.4431 3.7793 18 6 1.5973 0.3651 4.8933 19 6 2.1084 -0.3554 6.1424 20 1 3.1838 -0.5115 6.0574 21 6 1.4056 -1.7080 6.2745 22 6 1.8171 0.4830 7.3604 23 6 2.7324 0.9695 8.2177 24 6 2.0250 1.6923 9.2055 25 6 0.7197 1.6048 8.8925 26 8 0.6002 0.8759 7.7707 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7996 -1.2056 31 1 1.6053 -1.7199 -1.2951 32 1 1.1489 0.8593 -2.3518 33 1 0.6950 1.9156 -5.4831 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2057 36 1 1.1483 0.8592 2.3517 37 1 2.0312 1.3640 4.8473 38 1 0.5109 0.4426 4.9370 39 1 0.3302 -1.5520 6.3594 40 1 1.6162 -2.3144 5.3935 41 1 1.7694 -2.2212 7.1647 42 1 3.8024 0.8332 8.1626 43 1 2.4509 2.2152 10.0491 44 1 -0.0939 2.0493 9.4465 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753638504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:44 Heat of formation + Delta-G solvation = -31.188510 kcal Electronic energy + Delta-G solvation = -22757.166796 eV Core-core repulsion = 19289.921011 eV Total energy + Delta-G solvation = -3467.245785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.86697 -39.95668 -37.03192 -35.33701 -34.34392 -33.20379 -32.52623 -30.19431 -29.23102 -28.21076 -26.34412 -25.17393 -23.31300 -22.33915 -22.00950 -20.68826 -20.23240 -19.66223 -17.75566 -17.27417 -16.70918 -16.29055 -16.01460 -15.86079 -14.85394 -14.74232 -14.62509 -14.24600 -13.71203 -13.46144 -13.35691 -13.10890 -13.10196 -12.93137 -12.73667 -12.52279 -12.28709 -12.05391 -11.66248 -11.56790 -11.25768 -11.06808 -10.91425 -10.70184 -10.58556 -10.42233 -10.20276 -10.07888 -9.82801 -9.65818 -9.03562 -8.88324 -8.74468 -6.93002 -5.77686 -3.06092 1.44892 2.33347 2.56590 2.70229 3.15697 3.43562 3.48848 3.50434 4.29429 4.43132 4.58816 4.65108 4.73860 4.77402 4.90522 5.05325 5.14912 5.20827 5.33683 5.35946 5.38003 5.50879 5.57236 5.59654 5.70323 5.80485 5.82018 5.86358 5.95422 5.98288 6.08443 6.14708 6.20900 6.24693 6.38442 6.48573 6.64354 6.76466 6.85876 6.86663 7.45394 7.69977 8.16248 8.41465 9.52728 10.10009 10.44779 11.45311 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.042871 B = 0.002103 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.967970 B =13309.185075 C =13567.432249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.725 5.725 16 C 0.513 3.487 17 O -0.541 6.541 18 C -0.140 4.140 19 C 0.008 3.992 20 H 0.108 0.892 21 C -0.154 4.154 22 C -0.001 4.001 23 C -0.212 4.212 24 C -0.213 4.213 25 C -0.047 4.047 26 O -0.173 6.173 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.401 0.599 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 0.749 27.938 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.002 3.998 15 N -0.376 5.376 16 C 0.299 3.701 17 O -0.418 6.418 18 C -0.180 4.180 19 C -0.010 4.010 20 H 0.126 0.874 21 C -0.211 4.211 22 C -0.052 4.052 23 C -0.231 4.231 24 C -0.233 4.233 25 C -0.114 4.114 26 O -0.069 6.069 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.235 0.765 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.535 -0.174 27.711 27.717 hybrid contribution -0.041 0.663 -0.759 1.009 sum -0.577 0.489 26.952 26.963 Atomic orbital electron populations 1.21792 0.94672 1.01927 1.01484 1.21553 0.96706 1.00492 0.94226 0.90558 1.20579 0.96606 0.94212 0.85396 1.42341 1.66947 1.27670 1.00592 1.19240 1.28657 1.05413 0.83662 0.91143 1.24741 1.01056 0.97412 0.97882 1.69652 1.43602 1.16590 1.28494 0.86174 0.78033 0.77509 0.84391 1.21729 1.21788 1.20748 1.21422 1.00127 0.95267 0.82941 1.46100 1.57555 1.27932 1.06012 1.20476 0.79366 0.85693 0.84572 1.90677 1.40073 1.24481 1.86608 1.21768 1.03704 1.00309 0.92187 1.19518 1.02307 0.92861 0.86353 0.87367 1.21987 0.99859 0.95593 1.03672 1.22504 0.82037 1.01549 0.99084 1.21636 1.00546 1.03822 0.97136 1.21836 0.93571 1.05386 1.02471 1.24034 0.98901 0.99553 0.88923 1.84009 1.31828 1.54741 1.36348 0.93911 0.91163 0.92830 0.96135 0.96003 0.78213 0.93530 0.91333 0.91346 0.76466 0.88492 0.88329 0.92701 0.89458 0.92453 0.83492 0.83557 0.78214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.94 37.16 0.33 -1.71 16 2 C -0.11 -1.67 2.46 -90.62 -0.22 -1.89 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 5 N -0.73 -18.23 5.33 -59.91 -0.32 -18.55 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 10 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.13 1.68 5.06 -4.04 -0.02 1.66 16 15 N -0.72 -7.92 5.28 -60.29 -0.32 -8.24 16 16 C 0.51 5.85 7.55 -10.98 -0.08 5.77 16 17 O -0.54 -7.95 13.96 5.56 0.08 -7.87 16 18 C -0.14 -1.18 5.16 -27.88 -0.14 -1.33 16 19 C 0.01 0.08 2.44 -91.77 -0.22 -0.15 16 20 H 0.11 1.01 7.91 -51.93 -0.41 0.60 16 21 C -0.15 -1.47 8.92 37.16 0.33 -1.14 16 22 C 0.00 -0.01 5.83 -35.62 -0.21 -0.22 16 23 C -0.21 -1.88 10.78 -39.71 -0.43 -2.30 16 24 C -0.21 -1.66 10.91 -39.71 -0.43 -2.10 16 25 C -0.05 -0.35 12.09 29.41 0.36 0.01 16 26 O -0.17 -1.64 10.65 5.71 0.06 -1.58 16 27 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 28 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.38 9.95 6.85 -40.82 -0.28 9.67 16 33 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.40 3.53 7.65 -40.82 -0.31 3.22 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.98 5.95 -51.93 -0.31 0.67 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 44 H 0.20 0.75 8.06 -52.48 -0.42 0.32 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -32.85 364.90 -7.41 -40.26 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.10 Total: 8.07 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -1.01 Total: -7.63 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.09 Total: -54.16 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.14 Total: -9.45 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.85 -7.41 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.071 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds