Wall clock time and date at job start Tue Mar 31 2020 07:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 N 1.46506 * 109.46916 * 64.99869 * 4 2 1 6 6 C 1.36935 * 119.99911 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00226 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99846 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00275 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00062 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46963 * 89.99503 * 10 8 6 12 12 H 1.48492 * 109.47321 * 209.99941 * 10 8 6 13 13 H 1.48508 * 109.46965 * 329.99839 * 10 8 6 14 14 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 15 15 N 1.46499 * 109.46840 * 294.99527 * 14 2 1 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 2 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47084 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.47459 * 54.99614 * 19 18 16 21 21 C 1.53003 * 109.46992 * 294.99678 * 19 18 16 22 22 C 1.50703 * 109.47000 * 175.00027 * 19 18 16 23 23 C 1.34511 * 125.78639 * 239.99602 * 22 19 18 24 24 C 1.41378 * 106.83925 * 180.02562 * 23 22 19 25 25 C 1.34511 * 106.84277 * 359.97438 * 24 23 22 26 26 O 1.34301 * 125.78892 * 59.69176 * 22 19 18 27 27 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 28 28 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 29 29 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 31 31 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 32 32 H 0.96999 * 119.99735 * 0.02562 * 5 4 2 33 33 H 0.96997 * 120.00544 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47398 * 54.99853 * 14 2 1 35 35 H 1.09001 * 109.47194 * 175.00033 * 14 2 1 36 36 H 0.97000 * 120.00420 * 0.02562 * 15 14 2 37 37 H 1.09002 * 109.47152 * 300.00160 * 18 16 15 38 38 H 1.09001 * 109.46980 * 60.00059 * 18 16 15 39 39 H 1.08993 * 109.47618 * 300.00236 * 21 19 18 40 40 H 1.09002 * 109.47201 * 60.00376 * 21 19 18 41 41 H 1.09004 * 109.47134 * 180.02562 * 21 19 18 42 42 H 1.08005 * 126.58267 * 359.96593 * 23 22 19 43 43 H 1.08008 * 126.58067 * 180.02562 * 24 23 22 44 44 H 1.08007 * 125.79337 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.6524 0.0352 -2.4424 6 6 2.0019 -0.4205 -3.6855 7 1 2.5630 -1.3378 -3.7864 8 6 1.6351 0.2966 -4.8160 9 7 0.9510 1.4143 -4.6932 10 14 2.1125 -0.3246 -6.5118 11 1 1.0430 -1.2136 -7.0325 12 1 2.2881 0.8289 -7.4303 13 1 3.3860 -1.0832 -6.4207 14 6 2.0400 -0.7213 1.2493 15 7 1.6525 0.0354 2.4423 16 6 1.9964 -0.4130 3.6659 17 8 2.6263 -1.4431 3.7793 18 6 1.5973 0.3651 4.8933 19 6 2.1084 -0.3554 6.1424 20 1 3.1838 -0.5115 6.0574 21 6 1.4056 -1.7080 6.2745 22 6 1.8171 0.4830 7.3604 23 6 2.7324 0.9695 8.2177 24 6 2.0250 1.6923 9.2055 25 6 0.7197 1.6048 8.8925 26 8 0.6002 0.8759 7.7707 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7996 -1.2056 31 1 1.6053 -1.7199 -1.2951 32 1 1.1489 0.8593 -2.3518 33 1 0.6950 1.9156 -5.4831 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2057 36 1 1.1483 0.8592 2.3517 37 1 2.0312 1.3640 4.8473 38 1 0.5109 0.4426 4.9370 39 1 0.3302 -1.5520 6.3594 40 1 1.6162 -2.3144 5.3935 41 1 1.7694 -2.2212 7.1647 42 1 3.8024 0.8332 8.1626 43 1 2.4509 2.2152 10.0491 44 1 -0.0939 2.0493 9.4465 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753638504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:43 Heat of formation + Delta-G solvation = -52.267244 kcal Electronic energy + Delta-G solvation = -22758.080839 eV Core-core repulsion = 19289.921011 eV Total energy + Delta-G solvation = -3468.159828 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.47501 -40.90706 -38.34189 -36.29791 -35.74448 -34.10522 -33.80290 -31.96568 -29.96447 -29.00830 -27.65169 -26.74163 -24.52827 -23.64373 -22.64093 -21.64304 -21.22702 -20.64423 -19.19471 -18.39897 -17.67407 -17.21481 -16.86503 -16.80956 -16.43363 -15.82785 -15.66083 -15.45259 -15.22473 -14.85820 -14.44683 -14.07236 -13.99420 -13.71688 -13.69547 -13.55749 -13.48048 -13.22280 -12.96098 -12.79620 -12.45942 -12.27933 -12.18556 -12.13869 -11.98258 -11.94495 -11.69314 -11.64497 -10.94527 -10.81469 -10.78415 -10.03542 -9.34856 -8.99391 -7.95621 -5.23827 0.84122 1.47684 1.49046 1.57577 1.66876 1.73976 2.08712 2.27320 2.56914 3.38012 3.60604 3.72678 3.75093 3.97306 4.01133 4.06238 4.12935 4.18142 4.32913 4.36424 4.44479 4.56217 4.65575 4.69123 4.75037 4.79994 4.91315 4.94705 4.96597 5.05536 5.07252 5.13922 5.15983 5.21819 5.32387 5.38649 5.45808 5.50109 5.53865 5.64451 6.26129 6.27197 6.58439 7.28091 7.33964 8.09393 8.33571 9.27788 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.042871 B = 0.002103 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.967970 B =13309.185075 C =13567.432249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.078 0.922 4 C 0.156 3.844 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.073 0.927 8 C -0.075 4.075 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.294 1.294 13 H -0.271 1.271 14 C 0.139 3.861 15 N -0.716 5.716 16 C 0.513 3.487 17 O -0.576 6.576 18 C -0.130 4.130 19 C 0.011 3.989 20 H 0.102 0.898 21 C -0.149 4.149 22 C -0.016 4.016 23 C -0.223 4.223 24 C -0.228 4.228 25 C -0.045 4.045 26 O -0.187 6.187 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.376 0.624 33 H 0.252 0.748 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.414 0.586 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.154 0.846 43 H 0.165 0.835 44 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 1.194 29.369 29.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.096 0.904 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.091 0.909 8 C -0.268 4.268 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.196 1.196 14 C 0.014 3.986 15 N -0.369 5.369 16 C 0.301 3.699 17 O -0.456 6.456 18 C -0.169 4.169 19 C -0.008 4.008 20 H 0.120 0.880 21 C -0.206 4.206 22 C -0.066 4.066 23 C -0.242 4.242 24 C -0.247 4.247 25 C -0.112 4.112 26 O -0.083 6.083 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.209 0.791 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.251 0.749 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.172 0.828 43 H 0.182 0.818 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.808 0.264 29.171 29.183 hybrid contribution 0.060 0.502 -1.095 1.206 sum -0.748 0.766 28.076 28.096 Atomic orbital electron populations 1.21726 0.93932 1.01881 1.01734 1.21332 0.97110 1.00042 0.92853 0.90371 1.20740 0.96516 0.94147 0.85724 1.42515 1.66810 1.27812 1.01354 1.19629 1.27844 1.05281 0.85085 0.90858 1.25552 1.01754 0.97917 1.01539 1.69798 1.45089 1.17835 1.29119 0.85145 0.78024 0.76812 0.79806 1.21407 1.22074 1.19597 1.21106 0.99463 0.95016 0.83019 1.45962 1.57526 1.28175 1.05208 1.20968 0.78471 0.85284 0.85188 1.90673 1.41668 1.26155 1.87078 1.21744 1.04678 1.00384 0.90128 1.19426 1.01869 0.92638 0.86840 0.88032 1.21910 1.00156 0.95778 1.02772 1.22450 0.82302 1.02386 0.99459 1.21920 1.01106 1.03808 0.97400 1.22151 0.93875 1.05700 1.02974 1.24763 0.99934 0.98370 0.88086 1.83999 1.31884 1.55235 1.37203 0.90476 0.94015 0.93028 0.96280 0.96128 0.79082 0.93958 0.91853 0.92187 0.74909 0.86695 0.86784 0.92320 0.91324 0.92341 0.82826 0.81775 0.74934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.94 71.98 0.64 -3.11 16 2 C -0.09 -2.75 2.46 -10.79 -0.03 -2.78 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.16 6.11 5.65 86.38 0.49 6.60 16 5 N -0.74 -37.28 5.33 -343.44 -1.83 -39.11 16 6 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 7 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 8 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 9 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 10 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 C 0.14 3.53 5.06 86.38 0.44 3.97 16 15 N -0.72 -14.32 5.28 -463.05 -2.45 -16.76 16 16 C 0.51 10.99 7.55 87.66 0.66 11.65 16 17 O -0.58 -16.69 13.96 -3.02 -0.04 -16.73 16 18 C -0.13 -1.95 5.16 29.85 0.15 -1.79 16 19 C 0.01 0.19 2.44 -11.54 -0.03 0.16 16 20 H 0.10 1.86 7.91 -2.39 -0.02 1.84 16 21 C -0.15 -2.77 8.92 71.98 0.64 -2.13 16 22 C -0.02 -0.28 5.83 24.83 0.14 -0.13 16 23 C -0.22 -3.65 10.78 22.19 0.24 -3.41 16 24 C -0.23 -3.10 10.91 22.19 0.24 -2.86 16 25 C -0.04 -0.55 12.09 66.97 0.81 0.26 16 26 O -0.19 -3.18 10.65 -2.50 -0.03 -3.21 16 27 H 0.08 1.59 7.18 -2.39 -0.02 1.57 16 28 H 0.04 1.41 7.18 -2.38 -0.02 1.39 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.38 19.81 6.85 -92.71 -0.64 19.18 16 33 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.41 6.15 7.65 -92.71 -0.71 5.44 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.55 5.95 -2.39 -0.01 1.54 16 41 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 43 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.23 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -70.58 364.90 3.33 -67.25 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.35 Total: 29.27 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 5.71 Total: -10.44 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -3.99 Total: -114.39 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.07 Total: -19.94 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -70.58 3.33 -67.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.980 kcal (2) G-P(sol) polarization free energy of solvation -70.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds