Wall clock time and date at job start Tue Mar 31 2020 07:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 H 1.08992 * 109.47101 * 305.00652 * 9 8 7 11 11 C 1.53009 * 109.46870 * 65.00247 * 9 8 7 12 12 C 1.53002 * 109.47339 * 185.00128 * 9 8 7 13 13 N 1.46499 * 109.47063 * 175.00063 * 12 9 8 14 14 C 1.36936 * 120.00293 * 179.97438 * 13 12 9 15 15 H 1.08005 * 119.99549 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00396 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00012 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99968 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47347 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47168 * 120.00060 * 18 16 14 21 21 H 1.48505 * 109.47054 * 239.99666 * 18 16 14 22 22 C 1.50695 * 109.46934 * 119.99972 * 2 1 3 23 23 C 1.34515 * 125.78898 * 239.70892 * 22 2 1 24 24 C 1.41390 * 106.84073 * 179.89534 * 23 22 2 25 25 C 1.34516 * 106.83603 * 0.37904 * 24 23 22 26 26 O 1.34297 * 108.42415 * 359.76857 * 25 24 23 27 27 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 29 29 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 30 30 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 31 31 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 32 32 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 33 33 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 34 34 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 35 35 H 1.08992 * 109.46928 * 60.00299 * 11 9 8 36 36 H 1.09001 * 109.46842 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.46850 * 299.99869 * 11 9 8 38 38 H 1.08997 * 109.46854 * 295.00191 * 12 9 8 39 39 H 1.08991 * 109.47078 * 55.00470 * 12 9 8 40 40 H 0.97003 * 120.00200 * 0.02562 * 13 12 9 41 41 H 0.96993 * 120.00324 * 180.02562 * 17 16 14 42 42 H 1.08001 * 126.58148 * 0.03767 * 23 22 2 43 43 H 1.07998 * 126.57934 * 180.17109 * 24 23 22 44 44 H 1.07999 * 125.78372 * 179.75657 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 1.6073 0.3712 -4.8927 9 6 2.1216 -0.3473 -6.1417 10 1 3.1963 -0.5056 -6.0532 11 6 1.4168 -1.6985 -6.2793 12 6 1.8318 0.5072 -7.3773 13 7 2.4287 -0.1229 -8.5576 14 6 2.2982 0.4651 -9.7874 15 1 1.7556 1.3937 -9.8871 16 6 2.8632 -0.1321 -10.9058 17 7 3.5240 -1.2639 -10.7844 18 14 2.6858 0.6705 -12.5832 19 1 1.9034 1.9257 -12.4511 20 1 4.0318 0.9807 -13.1284 21 1 1.9806 -0.2572 -13.5038 22 6 2.0323 -0.7104 1.2304 23 6 2.8134 -0.1735 2.1850 24 6 3.0387 -1.1851 3.1467 25 6 2.3888 -2.2821 2.7180 26 8 1.7810 -1.9887 1.5570 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6054 -1.7197 -1.2952 31 1 3.1263 -0.7993 -1.2057 32 1 2.4935 -1.2124 -3.7906 33 1 0.5212 0.4500 -4.9405 34 1 2.0421 1.3695 -4.8424 35 1 0.3420 -1.5402 -6.3678 36 1 1.7835 -2.2106 -7.1689 37 1 1.6232 -2.3072 -5.3989 38 1 0.7540 0.5913 -7.5162 39 1 2.2592 1.5004 -7.2405 40 1 2.9157 -0.9570 -8.4681 41 1 3.9192 -1.6810 -11.5658 42 1 3.1934 0.8370 2.2127 43 1 3.6235 -1.0954 4.0502 44 1 2.3607 -3.2368 3.2221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753638505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:47 Heat of formation + Delta-G solvation = -31.298020 kcal Electronic energy + Delta-G solvation = -22756.829046 eV Core-core repulsion = 19289.578512 eV Total energy + Delta-G solvation = -3467.250534 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.86699 -39.95658 -37.03314 -35.33824 -34.34550 -33.20305 -32.52782 -30.19589 -29.23190 -28.21142 -26.34534 -25.17631 -23.31469 -22.34158 -22.01018 -20.68871 -20.23282 -19.66326 -17.75606 -17.27570 -16.71044 -16.29298 -16.01293 -15.86243 -14.85321 -14.74382 -14.62542 -14.24514 -13.71698 -13.46367 -13.35960 -13.10742 -13.10089 -12.93231 -12.73671 -12.52406 -12.28685 -12.05739 -11.66231 -11.56931 -11.25738 -11.07017 -10.92486 -10.71324 -10.57899 -10.42117 -10.20232 -10.05218 -9.82809 -9.66345 -9.03631 -8.89033 -8.74499 -6.93092 -5.78035 -3.06397 1.44869 2.33273 2.56552 2.70191 3.15641 3.42971 3.48978 3.51050 4.29402 4.43088 4.58631 4.65099 4.73860 4.77402 4.90524 5.05234 5.14827 5.20755 5.33649 5.35896 5.37907 5.50851 5.57072 5.59670 5.70276 5.80413 5.81968 5.86312 5.95335 5.98208 6.08329 6.14602 6.20884 6.24570 6.38339 6.48484 6.64219 6.76346 6.85762 6.86671 7.45345 7.70298 8.16184 8.41172 9.52486 10.09785 10.44477 11.45052 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.042795 B = 0.002103 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.122580 B =13309.050446 C =13566.117252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.008 3.992 3 H 0.108 0.892 4 C -0.140 4.140 5 C 0.513 3.487 6 O -0.541 6.541 7 N -0.725 5.725 8 C 0.126 3.874 9 C -0.111 4.111 10 H 0.076 0.924 11 C -0.141 4.141 12 C 0.160 3.840 13 N -0.731 5.731 14 C -0.238 4.238 15 H 0.071 0.929 16 C -0.016 4.016 17 N -0.934 5.934 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.001 4.001 23 C -0.212 4.212 24 C -0.214 4.214 25 C -0.047 4.047 26 O -0.173 6.173 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 -2.545 27.771 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 H 0.126 0.874 4 C -0.180 4.180 5 C 0.299 3.701 6 O -0.418 6.418 7 N -0.376 5.376 8 C 0.002 3.998 9 C -0.130 4.130 10 H 0.094 0.906 11 C -0.199 4.199 12 C 0.032 3.968 13 N -0.376 5.376 14 C -0.369 4.369 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.052 4.052 23 C -0.231 4.231 24 C -0.233 4.233 25 C -0.114 4.114 26 O -0.069 6.069 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.235 0.765 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.906 -1.867 27.524 27.740 hybrid contribution 0.649 -0.311 -0.724 1.021 sum -2.257 -2.178 26.799 26.982 Atomic orbital electron populations 1.21985 0.92969 1.02353 1.03803 1.19517 0.97271 0.97954 0.86300 0.87367 1.21767 1.03367 1.00634 0.92196 1.20477 0.79365 0.85691 0.84573 1.90679 1.39999 1.24534 1.86632 1.46099 1.57551 1.27911 1.06037 1.21420 1.00344 0.95052 0.82942 1.21554 1.00693 0.96466 0.94267 0.90558 1.21792 1.00527 0.96078 1.01480 1.20576 0.96367 0.94166 0.85682 1.42349 1.65008 1.27678 1.02527 1.19289 1.28220 1.04485 0.84907 0.91083 1.24743 1.00863 0.97520 0.98003 1.69663 1.40756 1.18887 1.29018 0.86103 0.77204 0.78381 0.84436 1.20533 1.21885 1.21884 1.22502 1.01057 0.82603 0.99014 1.21640 1.04067 1.01408 0.96022 1.21839 1.05505 0.93648 1.02278 1.24031 0.99383 1.00912 0.87077 1.84007 1.59450 1.28091 1.35376 0.92697 0.92448 0.89469 0.88338 0.88482 0.76466 0.91338 0.91342 0.92826 0.91167 0.93909 0.96001 0.96128 0.78215 0.93580 0.83493 0.83557 0.78214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.92 37.16 0.33 -1.14 16 2 C 0.01 0.08 2.44 -91.78 -0.22 -0.15 16 3 H 0.11 1.01 7.91 -51.92 -0.41 0.60 16 4 C -0.14 -1.18 5.16 -27.88 -0.14 -1.33 16 5 C 0.51 5.85 7.55 -10.98 -0.08 5.76 16 6 O -0.54 -7.94 13.97 5.55 0.08 -7.87 16 7 N -0.72 -7.92 5.28 -60.29 -0.32 -8.24 16 8 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 9 C -0.11 -1.67 2.46 -90.62 -0.22 -1.89 16 10 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 11 C -0.14 -2.04 8.94 37.16 0.33 -1.71 16 12 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 13 N -0.73 -18.23 5.33 -59.91 -0.32 -18.54 16 14 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 15 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 17 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 18 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 22 C 0.00 -0.01 5.83 -35.63 -0.21 -0.22 16 23 C -0.21 -1.88 10.78 -39.70 -0.43 -2.30 16 24 C -0.21 -1.67 10.91 -39.70 -0.43 -2.10 16 25 C -0.05 -0.34 12.09 29.42 0.36 0.01 16 26 O -0.17 -1.64 10.65 5.72 0.06 -1.58 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.98 5.95 -51.93 -0.31 0.67 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.40 3.52 7.66 -40.82 -0.31 3.21 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 37 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.38 9.94 6.85 -40.82 -0.28 9.66 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.20 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -32.87 364.90 -7.41 -40.28 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.10 Total: 8.02 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.01 Total: -7.62 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.09 Total: -54.14 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.14 Total: -9.45 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.87 -7.41 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.984 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds