Wall clock time and date at job start Tue Mar 31 2020 07:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47555 * 180.02562 * 8 7 5 10 10 H 1.08992 * 109.47101 * 305.00652 * 9 8 7 11 11 C 1.53009 * 109.46870 * 65.00247 * 9 8 7 12 12 C 1.53002 * 109.47339 * 185.00128 * 9 8 7 13 13 N 1.46499 * 109.47063 * 175.00063 * 12 9 8 14 14 C 1.36936 * 120.00293 * 179.97438 * 13 12 9 15 15 H 1.08005 * 119.99549 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00396 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00012 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99968 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47347 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47168 * 120.00060 * 18 16 14 21 21 H 1.48505 * 109.47054 * 239.99666 * 18 16 14 22 22 C 1.50695 * 109.46934 * 119.99972 * 2 1 3 23 23 C 1.34515 * 125.78898 * 239.70892 * 22 2 1 24 24 C 1.41390 * 106.84073 * 179.89534 * 23 22 2 25 25 C 1.34516 * 106.83603 * 0.37904 * 24 23 22 26 26 O 1.34297 * 108.42415 * 359.76857 * 25 24 23 27 27 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 29 29 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 30 30 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 31 31 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 32 32 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 33 33 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 34 34 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 35 35 H 1.08992 * 109.46928 * 60.00299 * 11 9 8 36 36 H 1.09001 * 109.46842 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.46850 * 299.99869 * 11 9 8 38 38 H 1.08997 * 109.46854 * 295.00191 * 12 9 8 39 39 H 1.08991 * 109.47078 * 55.00470 * 12 9 8 40 40 H 0.97003 * 120.00200 * 0.02562 * 13 12 9 41 41 H 0.96993 * 120.00324 * 180.02562 * 17 16 14 42 42 H 1.08001 * 126.58148 * 0.03767 * 23 22 2 43 43 H 1.07998 * 126.57934 * 180.17109 * 24 23 22 44 44 H 1.07999 * 125.78372 * 179.75657 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 1.6073 0.3712 -4.8927 9 6 2.1216 -0.3473 -6.1417 10 1 3.1963 -0.5056 -6.0532 11 6 1.4168 -1.6985 -6.2793 12 6 1.8318 0.5072 -7.3773 13 7 2.4287 -0.1229 -8.5576 14 6 2.2982 0.4651 -9.7874 15 1 1.7556 1.3937 -9.8871 16 6 2.8632 -0.1321 -10.9058 17 7 3.5240 -1.2639 -10.7844 18 14 2.6858 0.6705 -12.5832 19 1 1.9034 1.9257 -12.4511 20 1 4.0318 0.9807 -13.1284 21 1 1.9806 -0.2572 -13.5038 22 6 2.0323 -0.7104 1.2304 23 6 2.8134 -0.1735 2.1850 24 6 3.0387 -1.1851 3.1467 25 6 2.3888 -2.2821 2.7180 26 8 1.7810 -1.9887 1.5570 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6054 -1.7197 -1.2952 31 1 3.1263 -0.7993 -1.2057 32 1 2.4935 -1.2124 -3.7906 33 1 0.5212 0.4500 -4.9405 34 1 2.0421 1.3695 -4.8424 35 1 0.3420 -1.5402 -6.3678 36 1 1.7835 -2.2106 -7.1689 37 1 1.6232 -2.3072 -5.3989 38 1 0.7540 0.5913 -7.5162 39 1 2.2592 1.5004 -7.2405 40 1 2.9157 -0.9570 -8.4681 41 1 3.9192 -1.6810 -11.5658 42 1 3.1934 0.8370 2.2127 43 1 3.6235 -1.0954 4.0502 44 1 2.3607 -3.2368 3.2221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753638505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:46 Heat of formation + Delta-G solvation = -52.398337 kcal Electronic energy + Delta-G solvation = -22757.744025 eV Core-core repulsion = 19289.578512 eV Total energy + Delta-G solvation = -3468.165513 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.47491 -40.90643 -38.34263 -36.29934 -35.74533 -34.10605 -33.80211 -31.96690 -29.96500 -29.00858 -27.65279 -26.74364 -24.53070 -23.64488 -22.64109 -21.64324 -21.22686 -20.64443 -19.19714 -18.39912 -17.67444 -17.21709 -16.86595 -16.80897 -16.43327 -15.82821 -15.66108 -15.45570 -15.22489 -14.85597 -14.44806 -14.07497 -13.99579 -13.71728 -13.69549 -13.55985 -13.48122 -13.22118 -12.95765 -12.83104 -12.45922 -12.28057 -12.15354 -12.12412 -11.98611 -11.94571 -11.68987 -11.64774 -10.95715 -10.81482 -10.78400 -10.03547 -9.34870 -8.99477 -7.95971 -5.24111 0.84113 1.47739 1.47957 1.58333 1.66863 1.73933 2.08713 2.27287 2.56687 3.37862 3.60606 3.72667 3.75052 3.97302 4.01130 4.06235 4.12928 4.18153 4.32918 4.36326 4.44453 4.56232 4.65594 4.69129 4.75030 4.80026 4.91302 4.94718 4.96629 5.05501 5.07216 5.13911 5.15950 5.21822 5.32387 5.38655 5.45800 5.50271 5.53844 5.64443 6.26153 6.27114 6.58447 7.28085 7.33795 8.09204 8.33283 9.27681 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.042795 B = 0.002103 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.122580 B =13309.050446 C =13566.117252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.011 3.989 3 H 0.102 0.898 4 C -0.130 4.130 5 C 0.513 3.487 6 O -0.576 6.576 7 N -0.716 5.716 8 C 0.139 3.861 9 C -0.094 4.094 10 H 0.078 0.922 11 C -0.135 4.135 12 C 0.156 3.844 13 N -0.742 5.742 14 C -0.245 4.245 15 H 0.074 0.926 16 C -0.076 4.076 17 N -0.968 5.968 18 Si 0.973 3.027 19 H -0.268 1.268 20 H -0.293 1.293 21 H -0.293 1.293 22 C -0.016 4.016 23 C -0.223 4.223 24 C -0.228 4.228 25 C -0.045 4.045 26 O -0.187 6.187 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.414 0.586 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.021 0.979 39 H 0.019 0.981 40 H 0.376 0.624 41 H 0.252 0.748 42 H 0.154 0.846 43 H 0.165 0.835 44 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 -3.074 29.200 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.008 4.008 3 H 0.120 0.880 4 C -0.169 4.169 5 C 0.301 3.699 6 O -0.456 6.456 7 N -0.369 5.369 8 C 0.014 3.986 9 C -0.113 4.113 10 H 0.096 0.904 11 C -0.193 4.193 12 C 0.029 3.971 13 N -0.385 5.385 14 C -0.377 4.377 15 H 0.092 0.908 16 C -0.268 4.268 17 N -0.619 5.619 18 Si 0.802 3.198 19 H -0.192 1.192 20 H -0.220 1.220 21 H -0.220 1.220 22 C -0.066 4.066 23 C -0.242 4.242 24 C -0.247 4.247 25 C -0.111 4.111 26 O -0.083 6.083 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.251 0.749 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.172 0.828 43 H 0.182 0.818 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.782 -2.390 28.982 29.213 hybrid contribution 0.588 -0.128 -1.062 1.220 sum -2.194 -2.518 27.921 28.120 Atomic orbital electron populations 1.21908 0.93560 1.02261 1.02886 1.19425 0.96737 0.97820 0.86794 0.88037 1.21743 1.04495 1.00557 0.90137 1.20967 0.78450 0.85301 0.85189 1.90675 1.41569 1.26237 1.87100 1.45961 1.57512 1.28157 1.05237 1.21105 0.99810 0.94674 0.83016 1.21333 1.00958 0.96114 0.92936 0.90369 1.21726 1.00071 0.95760 1.01720 1.20738 0.95720 0.94682 0.85987 1.42523 1.65165 1.27538 1.03267 1.19669 1.27339 1.04434 0.86274 0.90835 1.25551 1.01309 0.98354 1.01582 1.69806 1.42055 1.20304 1.29700 0.85078 0.76972 0.77799 0.79940 1.19221 1.21978 1.21975 1.22449 1.01914 0.82911 0.99324 1.21923 1.03916 1.02113 0.96279 1.22154 1.06117 0.93535 1.02902 1.24760 0.98074 1.02116 0.86194 1.83997 1.59954 1.28066 1.36303 0.92312 0.92340 0.91331 0.86789 0.86686 0.74910 0.91861 0.92178 0.93023 0.94018 0.90477 0.96128 0.96259 0.79083 0.93962 0.82828 0.81777 0.74934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.92 71.98 0.64 -2.13 16 2 C 0.01 0.19 2.44 -11.54 -0.03 0.16 16 3 H 0.10 1.86 7.91 -2.38 -0.02 1.84 16 4 C -0.13 -1.95 5.16 29.85 0.15 -1.79 16 5 C 0.51 10.99 7.55 87.66 0.66 11.65 16 6 O -0.58 -16.68 13.97 -3.04 -0.04 -16.72 16 7 N -0.72 -14.30 5.28 -463.06 -2.45 -16.75 16 8 C 0.14 3.52 5.06 86.38 0.44 3.96 16 9 C -0.09 -2.75 2.46 -10.79 -0.03 -2.78 16 10 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 11 C -0.14 -3.75 8.94 71.99 0.64 -3.11 16 12 C 0.16 6.11 5.65 86.38 0.49 6.59 16 13 N -0.74 -37.25 5.33 -343.46 -1.83 -39.08 16 14 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 15 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 16 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 17 N -0.97 -58.82 13.06 21.65 0.28 -58.53 16 18 Si 0.97 46.25 29.55 68.60 2.03 48.27 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 22 C -0.02 -0.28 5.83 24.83 0.14 -0.13 16 23 C -0.22 -3.65 10.78 22.19 0.24 -3.41 16 24 C -0.23 -3.10 10.91 22.19 0.24 -2.86 16 25 C -0.04 -0.55 12.09 66.97 0.81 0.26 16 26 O -0.19 -3.18 10.65 -2.45 -0.03 -3.21 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.55 5.95 -2.39 -0.01 1.53 16 30 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.41 6.14 7.66 -92.71 -0.71 5.43 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.41 7.18 -2.39 -0.02 1.39 16 37 H 0.08 1.59 7.18 -2.39 -0.02 1.57 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.38 19.80 6.85 -92.71 -0.63 19.16 16 41 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 43 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.23 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -70.62 364.90 3.33 -67.29 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.35 Total: 29.12 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.71 Total: -10.39 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -3.99 Total: -114.36 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.07 Total: -19.93 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -70.62 3.33 -67.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.891 kcal (2) G-P(sol) polarization free energy of solvation -70.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds