Wall clock time and date at job start Tue Mar 31 2020 07:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53003 * 109.46853 * 120.00461 * 2 1 3 5 5 N 1.46499 * 109.46708 * 294.99623 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 15 15 N 1.46497 * 109.47391 * 64.99897 * 14 2 1 16 16 C 1.34774 * 120.00109 * 179.97438 * 15 14 2 17 17 O 1.21277 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99623 * 180.02562 * 16 15 14 19 19 C 1.53002 * 109.46927 * 179.97438 * 18 16 15 20 20 H 1.09007 * 109.46915 * 55.00696 * 19 18 16 21 21 C 1.52993 * 109.47505 * 295.00429 * 19 18 16 22 22 C 1.50698 * 109.47327 * 174.99959 * 19 18 16 23 23 C 1.34518 * 125.79274 * 240.00264 * 22 19 18 24 24 C 1.41387 * 106.84054 * 180.02562 * 23 22 19 25 25 C 1.34514 * 106.83937 * 359.97438 * 24 23 22 26 26 O 1.34302 * 108.42141 * 359.74109 * 25 24 23 27 27 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47478 * 299.99935 * 1 2 3 29 29 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 30 30 H 1.08998 * 109.46692 * 175.00125 * 4 2 1 31 31 H 1.08994 * 109.47584 * 54.99989 * 4 2 1 32 32 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 33 33 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47203 * 185.00287 * 14 2 1 35 35 H 1.08997 * 109.47065 * 304.99977 * 14 2 1 36 36 H 0.97005 * 119.99459 * 0.02562 * 15 14 2 37 37 H 1.08996 * 109.47454 * 299.99873 * 18 16 15 38 38 H 1.09005 * 109.47136 * 60.00629 * 18 16 15 39 39 H 1.09005 * 109.47118 * 59.99532 * 21 19 18 40 40 H 1.09005 * 109.47639 * 179.97438 * 21 19 18 41 41 H 1.09001 * 109.47609 * 299.99822 * 21 19 18 42 42 H 1.08002 * 126.57986 * 359.96613 * 23 22 19 43 43 H 1.08001 * 126.57665 * 180.02562 * 24 23 22 44 44 H 1.07998 * 125.78647 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0018 -0.4204 3.6855 7 1 2.5628 -1.3378 3.7864 8 6 1.6395 0.2994 4.8157 9 7 0.9605 1.4201 4.6925 10 14 2.1168 -0.3218 6.5115 11 1 3.4421 0.2329 6.8870 12 1 1.0996 0.1127 7.5023 13 1 2.1881 -1.8050 6.4933 14 6 2.0400 -0.7212 -1.2493 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4131 -3.6659 17 8 2.6265 -1.4432 -3.7792 18 6 1.5982 0.3656 -4.8932 19 6 2.1092 -0.3550 -6.1424 20 1 1.7461 -1.3828 -6.1430 21 6 3.6392 -0.3547 -6.1415 22 6 1.6074 0.3556 -7.3729 23 6 0.8316 -0.1827 -8.3309 24 6 0.6030 0.8304 -9.2903 25 6 1.2525 1.9273 -8.8609 26 8 1.8540 1.6357 -7.6961 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.1262 -0.7996 1.2055 31 1 1.6054 -1.7199 1.2951 32 1 1.1482 0.8590 2.3517 33 1 0.7075 1.9234 5.4823 34 1 3.1263 -0.7995 -1.2056 35 1 1.6054 -1.7197 -1.2952 36 1 1.1489 0.8595 -2.3517 37 1 0.5120 0.4439 -4.9372 38 1 2.0330 1.3641 -4.8469 39 1 4.0021 -0.8687 -5.2514 40 1 4.0032 -0.8685 -7.0313 41 1 4.0023 0.6731 -6.1409 42 1 0.4561 -1.1949 -8.3618 43 1 0.0185 0.7409 -10.1940 44 1 1.2811 2.8821 -9.3648 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753638506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:49 Heat of formation + Delta-G solvation = -31.213494 kcal Electronic energy + Delta-G solvation = -22753.751543 eV Core-core repulsion = 19286.504674 eV Total energy + Delta-G solvation = -3467.246869 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.86677 -39.95708 -37.03235 -35.33702 -34.34412 -33.20342 -32.52617 -30.19429 -29.23127 -28.21173 -26.34183 -25.17443 -23.31432 -22.33797 -22.01023 -20.68779 -20.23751 -19.65445 -17.75782 -17.27439 -16.71029 -16.29866 -16.12287 -15.65255 -15.02575 -14.81880 -14.49958 -14.18433 -13.66700 -13.56966 -13.36227 -13.10416 -12.99443 -12.91729 -12.86969 -12.48373 -12.27231 -12.06828 -11.65916 -11.55648 -11.26156 -11.06888 -10.91287 -10.71940 -10.56494 -10.42851 -10.20317 -10.07784 -9.82866 -9.65894 -9.03571 -8.88266 -8.74514 -6.92991 -5.77691 -3.06076 1.44876 2.33190 2.56611 2.70262 3.15698 3.43590 3.48869 3.50434 4.29431 4.43126 4.58839 4.65087 4.73832 4.77479 4.90291 5.05555 5.14732 5.20896 5.34014 5.35746 5.38072 5.50762 5.57237 5.59596 5.70425 5.80424 5.82188 5.86444 5.95386 5.97897 6.08891 6.15014 6.20811 6.24519 6.38339 6.48578 6.64226 6.76403 6.85919 6.86682 7.45405 7.69963 8.16249 8.41467 9.52714 10.10025 10.44766 11.45298 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043217 B = 0.002105 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.739783 B =13297.313277 C =13574.990850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.725 5.725 16 C 0.513 3.487 17 O -0.541 6.541 18 C -0.140 4.140 19 C 0.008 3.992 20 H 0.108 0.892 21 C -0.154 4.154 22 C -0.001 4.001 23 C -0.212 4.212 24 C -0.214 4.214 25 C -0.046 4.046 26 O -0.173 6.173 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.401 0.599 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 0.634 -27.940 27.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.002 3.998 15 N -0.376 5.376 16 C 0.299 3.701 17 O -0.418 6.418 18 C -0.180 4.180 19 C -0.010 4.010 20 H 0.126 0.874 21 C -0.211 4.211 22 C -0.052 4.052 23 C -0.232 4.232 24 C -0.233 4.233 25 C -0.114 4.114 26 O -0.069 6.069 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.235 0.765 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.296 -0.027 -27.686 27.688 hybrid contribution -0.440 0.420 0.732 0.952 sum -0.737 0.393 -26.954 26.967 Atomic orbital electron populations 1.21790 0.94679 1.01921 1.01480 1.21555 0.96702 1.00498 0.94227 0.90552 1.20577 0.96605 0.94213 0.85395 1.42341 1.66896 1.27718 1.00596 1.19241 1.28709 1.05348 0.83674 0.91146 1.24742 1.01086 0.97379 0.97891 1.69655 1.43813 1.16356 1.28510 0.86171 0.77584 0.78016 0.84325 1.21736 1.21784 1.20747 1.21421 1.00130 0.95267 0.82940 1.46099 1.57585 1.27902 1.06012 1.20473 0.79355 0.85697 0.84579 1.90677 1.39924 1.24599 1.86641 1.21769 1.03346 1.00654 0.92201 1.19517 0.97276 0.97938 0.86304 0.87379 1.21987 0.92954 1.02376 1.03812 1.22506 1.01141 0.82497 0.99020 1.21637 1.04119 1.01355 0.96044 1.21837 1.05453 0.93657 1.02332 1.24033 0.99445 1.00947 0.86967 1.84010 1.59809 1.27970 1.35124 0.92832 0.91164 0.93918 0.96139 0.96002 0.78211 0.93533 0.91346 0.91335 0.76465 0.88501 0.88318 0.89461 0.92446 0.92677 0.83501 0.83560 0.78214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.16 0.33 -1.71 16 2 C -0.11 -1.67 2.46 -90.62 -0.22 -1.89 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 4 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 5 N -0.73 -18.23 5.33 -59.91 -0.32 -18.55 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 10 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 C 0.13 1.68 5.06 -4.04 -0.02 1.66 16 15 N -0.72 -7.92 5.28 -60.30 -0.32 -8.24 16 16 C 0.51 5.85 7.55 -10.99 -0.08 5.77 16 17 O -0.54 -7.95 13.97 5.56 0.08 -7.87 16 18 C -0.14 -1.18 5.16 -27.88 -0.14 -1.33 16 19 C 0.01 0.08 2.44 -91.78 -0.22 -0.15 16 20 H 0.11 1.00 7.91 -51.93 -0.41 0.59 16 21 C -0.15 -1.48 8.92 37.15 0.33 -1.15 16 22 C 0.00 -0.01 5.83 -35.62 -0.21 -0.22 16 23 C -0.21 -1.87 10.78 -39.70 -0.43 -2.30 16 24 C -0.21 -1.66 10.91 -39.70 -0.43 -2.09 16 25 C -0.05 -0.34 12.09 29.42 0.36 0.01 16 26 O -0.17 -1.65 10.65 5.71 0.06 -1.59 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.20 7.18 -51.93 -0.37 0.82 16 29 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.38 9.95 6.85 -40.82 -0.28 9.67 16 33 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.40 3.53 7.66 -40.82 -0.31 3.22 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.99 5.95 -51.93 -0.31 0.68 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.20 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -32.85 364.90 -7.41 -40.26 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.10 Total: 8.07 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -1.01 Total: -7.63 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.09 Total: -54.16 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.14 Total: -9.46 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.85 -7.41 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.048 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds