Wall clock time and date at job start Tue Mar 31 2020 07:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53003 * 109.46853 * 120.00461 * 2 1 3 5 5 N 1.46499 * 109.46708 * 294.99623 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99247 * 10 8 6 12 12 H 1.48496 * 109.47375 * 209.99772 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99467 * 10 8 6 14 14 C 1.53001 * 109.47100 * 240.00151 * 2 1 3 15 15 N 1.46497 * 109.47391 * 64.99897 * 14 2 1 16 16 C 1.34774 * 120.00109 * 179.97438 * 15 14 2 17 17 O 1.21277 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99623 * 180.02562 * 16 15 14 19 19 C 1.53002 * 109.46927 * 179.97438 * 18 16 15 20 20 H 1.09007 * 109.46915 * 55.00696 * 19 18 16 21 21 C 1.52993 * 109.47505 * 295.00429 * 19 18 16 22 22 C 1.50698 * 109.47327 * 174.99959 * 19 18 16 23 23 C 1.34518 * 125.79274 * 240.00264 * 22 19 18 24 24 C 1.41387 * 106.84054 * 180.02562 * 23 22 19 25 25 C 1.34514 * 106.83937 * 359.97438 * 24 23 22 26 26 O 1.34302 * 108.42141 * 359.74109 * 25 24 23 27 27 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47478 * 299.99935 * 1 2 3 29 29 H 1.09005 * 109.47003 * 60.00012 * 1 2 3 30 30 H 1.08998 * 109.46692 * 175.00125 * 4 2 1 31 31 H 1.08994 * 109.47584 * 54.99989 * 4 2 1 32 32 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 33 33 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47203 * 185.00287 * 14 2 1 35 35 H 1.08997 * 109.47065 * 304.99977 * 14 2 1 36 36 H 0.97005 * 119.99459 * 0.02562 * 15 14 2 37 37 H 1.08996 * 109.47454 * 299.99873 * 18 16 15 38 38 H 1.09005 * 109.47136 * 60.00629 * 18 16 15 39 39 H 1.09005 * 109.47118 * 59.99532 * 21 19 18 40 40 H 1.09005 * 109.47639 * 179.97438 * 21 19 18 41 41 H 1.09001 * 109.47609 * 299.99822 * 21 19 18 42 42 H 1.08002 * 126.57986 * 359.96613 * 23 22 19 43 43 H 1.08001 * 126.57665 * 180.02562 * 24 23 22 44 44 H 1.07998 * 125.78647 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 0.0353 2.4423 6 6 2.0018 -0.4204 3.6855 7 1 2.5628 -1.3378 3.7864 8 6 1.6395 0.2994 4.8157 9 7 0.9605 1.4201 4.6925 10 14 2.1168 -0.3218 6.5115 11 1 3.4421 0.2329 6.8870 12 1 1.0996 0.1127 7.5023 13 1 2.1881 -1.8050 6.4933 14 6 2.0400 -0.7212 -1.2493 15 7 1.6525 0.0353 -2.4424 16 6 1.9965 -0.4131 -3.6659 17 8 2.6265 -1.4432 -3.7792 18 6 1.5982 0.3656 -4.8932 19 6 2.1092 -0.3550 -6.1424 20 1 1.7461 -1.3828 -6.1430 21 6 3.6392 -0.3547 -6.1415 22 6 1.6074 0.3556 -7.3729 23 6 0.8316 -0.1827 -8.3309 24 6 0.6030 0.8304 -9.2903 25 6 1.2525 1.9273 -8.8609 26 8 1.8540 1.6357 -7.6961 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.1262 -0.7996 1.2055 31 1 1.6054 -1.7199 1.2951 32 1 1.1482 0.8590 2.3517 33 1 0.7075 1.9234 5.4823 34 1 3.1263 -0.7995 -1.2056 35 1 1.6054 -1.7197 -1.2952 36 1 1.1489 0.8595 -2.3517 37 1 0.5120 0.4439 -4.9372 38 1 2.0330 1.3641 -4.8469 39 1 4.0021 -0.8687 -5.2514 40 1 4.0032 -0.8685 -7.0313 41 1 4.0023 0.6731 -6.1409 42 1 0.4561 -1.1949 -8.3618 43 1 0.0185 0.7409 -10.1940 44 1 1.2811 2.8821 -9.3648 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753638506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:49 Heat of formation + Delta-G solvation = -52.297867 kcal Electronic energy + Delta-G solvation = -22754.665830 eV Core-core repulsion = 19286.504674 eV Total energy + Delta-G solvation = -3468.161156 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.47411 -40.90761 -38.34234 -36.29873 -35.74492 -34.10535 -33.80119 -31.96566 -29.96405 -29.01235 -27.64943 -26.74148 -24.53040 -23.64371 -22.63977 -21.64338 -21.22883 -20.63839 -19.19442 -18.40135 -17.67655 -17.26133 -16.88603 -16.69167 -16.40280 -16.00229 -15.66016 -15.36175 -15.15567 -14.95709 -14.29085 -14.18253 -14.07140 -13.69302 -13.65214 -13.55831 -13.48150 -13.22258 -12.95389 -12.80990 -12.45976 -12.26900 -12.16993 -12.16163 -11.98021 -11.94834 -11.69465 -11.64465 -10.94502 -10.81293 -10.78377 -10.03609 -9.34791 -8.99409 -7.95647 -5.23839 0.84180 1.47681 1.49056 1.57589 1.66883 1.74090 2.08866 2.27382 2.56924 3.37995 3.60603 3.72725 3.74968 3.97131 4.01435 4.06120 4.12886 4.18312 4.32931 4.36485 4.44369 4.56253 4.65154 4.69431 4.74851 4.80015 4.91163 4.94748 4.96551 5.05550 5.07184 5.13798 5.15930 5.21748 5.32584 5.38460 5.45638 5.50051 5.53903 5.64676 6.26330 6.27175 6.58434 7.28075 7.33929 8.09383 8.33528 9.27757 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043217 B = 0.002105 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.739783 B =13297.313277 C =13574.990850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.078 0.922 4 C 0.156 3.844 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.073 0.927 8 C -0.075 4.075 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.294 1.294 13 H -0.271 1.271 14 C 0.139 3.861 15 N -0.716 5.716 16 C 0.513 3.487 17 O -0.576 6.576 18 C -0.130 4.130 19 C 0.011 3.989 20 H 0.103 0.897 21 C -0.149 4.149 22 C -0.016 4.016 23 C -0.223 4.223 24 C -0.228 4.228 25 C -0.045 4.045 26 O -0.187 6.187 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.376 0.624 33 H 0.252 0.748 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.414 0.586 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.155 0.845 43 H 0.165 0.835 44 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 1.021 -29.383 29.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.096 0.904 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.091 0.909 8 C -0.268 4.268 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.196 1.196 14 C 0.014 3.986 15 N -0.369 5.369 16 C 0.301 3.699 17 O -0.456 6.456 18 C -0.169 4.169 19 C -0.007 4.007 20 H 0.121 0.879 21 C -0.207 4.207 22 C -0.066 4.066 23 C -0.242 4.242 24 C -0.247 4.247 25 C -0.112 4.112 26 O -0.084 6.084 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.209 0.791 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.251 0.749 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.172 0.828 43 H 0.182 0.818 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.648 0.350 -29.158 29.168 hybrid contribution -0.315 0.276 1.072 1.151 sum -0.964 0.627 -28.087 28.110 Atomic orbital electron populations 1.21724 0.93907 1.01895 1.01738 1.21334 0.97134 1.00027 0.92853 0.90402 1.20737 0.96509 0.94151 0.85724 1.42515 1.66760 1.27858 1.01358 1.19631 1.27886 1.05229 0.85098 0.90861 1.25553 1.01781 0.97885 1.01549 1.69801 1.45306 1.17595 1.29135 0.85142 0.76962 0.77946 0.79726 1.21432 1.22058 1.19588 1.21104 0.99448 0.95030 0.83020 1.45962 1.57553 1.28148 1.05209 1.20965 0.78442 0.85305 0.85196 1.90673 1.41480 1.26310 1.87111 1.21745 1.04565 1.00483 0.90145 1.19424 0.96657 0.97861 0.86804 0.87938 1.21912 0.93650 1.02215 1.02888 1.22454 1.02035 0.82789 0.99344 1.21922 1.03918 1.02075 0.96247 1.22153 1.06031 0.93524 1.02958 1.24759 0.98170 1.02164 0.86097 1.83999 1.60326 1.27981 1.36073 0.93003 0.94017 0.90466 0.96299 0.96115 0.79081 0.93960 0.92225 0.91819 0.74909 0.86544 0.86938 0.91368 0.92305 0.92398 0.82767 0.81755 0.74974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.94 71.98 0.64 -3.10 16 2 C -0.09 -2.76 2.46 -10.79 -0.03 -2.78 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.16 6.12 5.65 86.38 0.49 6.60 16 5 N -0.74 -37.29 5.33 -343.46 -1.83 -39.12 16 6 C -0.25 -13.83 9.99 84.03 0.84 -13.00 16 7 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 8 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 9 N -0.97 -58.81 13.06 21.65 0.28 -58.52 16 10 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 14 C 0.14 3.53 5.06 86.38 0.44 3.97 16 15 N -0.72 -14.32 5.28 -463.07 -2.45 -16.77 16 16 C 0.51 11.00 7.55 87.66 0.66 11.66 16 17 O -0.58 -16.69 13.97 -3.02 -0.04 -16.73 16 18 C -0.13 -1.95 5.16 29.85 0.15 -1.79 16 19 C 0.01 0.19 2.44 -11.54 -0.03 0.17 16 20 H 0.10 1.85 7.91 -2.38 -0.02 1.84 16 21 C -0.15 -2.82 8.92 71.98 0.64 -2.17 16 22 C -0.02 -0.28 5.83 24.83 0.14 -0.14 16 23 C -0.22 -3.61 10.78 22.19 0.24 -3.37 16 24 C -0.23 -3.08 10.91 22.19 0.24 -2.83 16 25 C -0.05 -0.56 12.09 66.97 0.81 0.25 16 26 O -0.19 -3.21 10.65 -2.48 -0.03 -3.24 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.40 7.18 -2.39 -0.02 1.39 16 29 H 0.08 1.59 7.18 -2.38 -0.02 1.57 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.38 19.82 6.85 -92.70 -0.63 19.18 16 33 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.41 6.15 7.66 -92.70 -0.71 5.44 16 37 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.07 1.56 5.95 -2.38 -0.01 1.55 16 40 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 43 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.23 1.00 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -70.60 364.90 3.33 -67.27 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.35 Total: 29.26 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 5.71 Total: -10.40 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -3.99 Total: -114.41 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.07 Total: -19.97 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -70.60 3.33 -67.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.970 kcal (2) G-P(sol) polarization free energy of solvation -70.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds