Wall clock time and date at job start Tue Mar 31 2020 07:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.50706 * 109.47103 * 120.00171 * 2 1 3 5 5 O 1.33655 * 125.80028 * 299.97338 * 4 2 1 6 6 C 1.34214 * 110.90867 * 180.02562 * 5 4 2 7 7 C 1.34177 * 109.12112 * 0.26473 * 6 5 4 8 8 C 1.36415 * 125.80203 * 119.99934 * 4 2 1 9 9 C 1.47376 * 127.19139 * 359.95585 * 8 4 2 10 10 O 1.21610 * 120.00412 * 0.02562 * 9 8 4 11 11 N 1.34781 * 119.99696 * 180.02562 * 9 8 4 12 12 C 1.46497 * 119.99833 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47133 * 179.97438 * 12 11 9 14 14 H 1.08992 * 109.47543 * 54.99925 * 13 12 11 15 15 C 1.53002 * 109.47236 * 294.99627 * 13 12 11 16 16 C 1.53000 * 109.47247 * 175.00105 * 13 12 11 17 17 N 1.46498 * 109.47565 * 184.99760 * 16 13 12 18 18 C 1.36935 * 120.00646 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99630 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00473 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99838 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00241 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46807 * 90.00338 * 22 20 18 24 24 H 1.48497 * 109.47186 * 210.00051 * 22 20 18 25 25 H 1.48498 * 109.47214 * 330.00746 * 22 20 18 26 26 H 1.09001 * 109.46635 * 300.00154 * 1 2 3 27 27 H 1.08998 * 109.47040 * 60.00100 * 1 2 3 28 28 H 1.08996 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47225 * 239.99872 * 2 1 3 30 30 H 1.09002 * 109.46788 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47054 * 299.99892 * 3 2 1 32 32 H 1.09001 * 109.47007 * 60.00077 * 3 2 1 33 33 H 1.08002 * 125.43487 * 179.97438 * 6 5 4 34 34 H 1.08005 * 127.01648 * 179.69756 * 7 6 5 35 35 H 0.96998 * 119.99795 * 359.97438 * 11 9 8 36 36 H 1.09005 * 109.47194 * 300.00202 * 12 11 9 37 37 H 1.09006 * 109.47143 * 59.99731 * 12 11 9 38 38 H 1.09000 * 109.47232 * 179.97438 * 15 13 12 39 39 H 1.09000 * 109.47431 * 300.00605 * 15 13 12 40 40 H 1.09001 * 109.46859 * 59.99676 * 15 13 12 41 41 H 1.08998 * 109.46974 * 305.00305 * 16 13 12 42 42 H 1.08997 * 109.47423 * 64.99963 * 16 13 12 43 43 H 0.97008 * 119.99298 * 0.02562 * 17 16 13 44 44 H 0.97000 * 120.00163 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 1.7824 -0.3561 2.4947 6 6 2.3777 -1.1973 3.3546 7 6 3.0460 -2.1327 2.6628 8 6 2.8199 -1.8243 1.2433 9 6 3.3399 -2.5611 0.0776 10 8 3.0735 -2.1850 -1.0478 11 7 4.1106 -3.6518 0.2589 12 6 4.6279 -4.3840 -0.8997 13 6 5.4669 -5.5702 -0.4204 14 1 4.8725 -6.1870 0.2534 15 6 6.7040 -5.0547 0.3178 16 6 5.9036 -6.4060 -1.6252 17 7 6.6047 -7.6051 -1.1595 18 6 7.0903 -8.5097 -2.0656 19 1 6.9567 -8.3390 -3.1237 20 6 7.7551 -9.6455 -1.6244 21 7 7.9183 -9.8533 -0.3349 22 14 8.4180 -10.8792 -2.8604 23 1 9.8086 -10.5113 -3.2297 24 1 8.4083 -12.2368 -2.2587 25 1 7.5643 -10.8700 -4.0755 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.3304 -1.1290 4.4314 34 1 3.6295 -2.9470 3.0665 35 1 4.3234 -3.9515 1.1566 36 1 3.7948 -4.7472 -1.5015 37 1 5.2485 -3.7200 -1.5016 38 1 7.3015 -5.8998 0.6597 39 1 7.2985 -4.4378 -0.3560 40 1 6.3929 -4.4592 1.1762 41 1 5.0260 -6.6990 -2.2014 42 1 6.5707 -5.8163 -2.2540 43 1 6.7243 -7.7585 -0.2092 44 1 8.3825 -10.6472 -0.0265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753644872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:59 Heat of formation + Delta-G solvation = -34.324861 kcal Electronic energy + Delta-G solvation = -23177.150485 eV Core-core repulsion = 19709.768697 eV Total energy + Delta-G solvation = -3467.381788 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.84969 -39.49013 -36.86295 -35.74388 -34.33556 -33.21271 -32.24822 -30.04029 -29.35599 -27.47141 -26.67660 -25.51035 -23.54585 -22.76078 -22.21836 -20.61567 -20.35321 -19.48819 -17.97673 -17.01271 -16.46046 -16.06254 -15.92112 -15.31219 -15.13039 -14.83136 -14.47781 -14.18447 -13.83496 -13.63711 -13.40527 -13.26651 -13.01410 -12.89086 -12.61870 -12.50352 -12.29998 -12.04375 -11.58286 -11.53437 -11.24151 -11.05875 -10.91079 -10.69339 -10.56572 -10.40729 -10.07147 -10.05292 -9.86368 -9.66403 -9.06740 -8.87436 -8.78659 -6.91979 -5.76869 -3.05175 1.18109 1.81175 2.54339 3.24642 3.29695 3.44177 3.49454 3.51092 4.14530 4.52853 4.59521 4.62365 4.69764 4.80022 5.03214 5.09591 5.20829 5.22963 5.31652 5.35815 5.40103 5.49924 5.56111 5.58209 5.65096 5.80942 5.82475 5.91187 5.94962 5.98183 6.02641 6.05653 6.12780 6.25942 6.40113 6.51706 6.65668 6.77836 6.79203 6.87489 7.52299 7.70796 8.21345 8.42386 9.53591 10.10976 10.45787 11.46222 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034043 B = 0.002469 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.300275 B =11337.755099 C =11836.112172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.036 4.036 3 C -0.146 4.146 4 C 0.087 3.913 5 O -0.174 6.174 6 C -0.041 4.041 7 C -0.188 4.188 8 C -0.243 4.243 9 C 0.588 3.412 10 O -0.545 6.545 11 N -0.716 5.716 12 C 0.127 3.873 13 C -0.111 4.111 14 H 0.076 0.924 15 C -0.141 4.141 16 C 0.161 3.839 17 N -0.731 5.731 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.133 0.867 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.207 0.793 34 H 0.157 0.843 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.041 0.959 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.343 21.978 7.808 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.054 4.054 3 C -0.203 4.203 4 C 0.034 3.966 5 O -0.070 6.070 6 C -0.107 4.107 7 C -0.207 4.207 8 C -0.248 4.248 9 C 0.376 3.624 10 O -0.425 6.425 11 N -0.367 5.367 12 C 0.004 3.996 13 C -0.130 4.130 14 H 0.095 0.905 15 C -0.199 4.199 16 C 0.033 3.967 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.224 0.776 34 H 0.175 0.825 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.648 22.375 6.926 27.108 hybrid contribution 0.785 -1.277 0.412 1.555 sum -12.863 21.097 7.338 25.776 Atomic orbital electron populations 1.21842 0.93417 1.02558 1.02484 1.20349 0.96608 0.96378 0.92089 1.21841 1.01625 0.94335 1.02487 1.22842 0.95730 0.94074 0.83999 1.83744 1.59782 1.48250 1.15191 1.23858 0.99255 0.91998 0.95545 1.22900 1.04221 1.02172 0.91448 1.21198 1.08638 1.01041 0.93898 1.17180 0.77955 0.79948 0.87330 1.90703 1.59535 1.67829 1.24444 1.45850 1.51568 1.28551 1.10684 1.21438 0.97691 0.93078 0.87409 1.21555 0.96590 0.95394 0.99454 0.90543 1.21792 0.97586 1.01340 0.99157 1.20571 0.94987 0.88287 0.92892 1.42342 1.67238 1.21350 1.06621 1.19241 1.28590 0.99650 0.89424 0.91146 1.24736 1.01622 0.98744 0.95990 1.69657 1.47762 1.28851 1.12119 0.86173 0.78878 0.80833 0.80230 1.21727 1.21792 1.20747 0.92330 0.91336 0.92174 0.84971 0.92192 0.91334 0.92330 0.77602 0.82494 0.76491 0.91213 0.91217 0.91137 0.92785 0.93966 0.96101 0.95969 0.78217 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.18 37.16 0.34 -0.85 16 2 C -0.04 -0.36 3.25 -91.76 -0.30 -0.66 16 3 C -0.15 -1.18 9.18 37.16 0.34 -0.84 16 4 C 0.09 0.96 5.88 -34.96 -0.21 0.75 16 5 O -0.17 -1.72 10.52 7.65 0.08 -1.64 16 6 C -0.04 -0.32 12.03 29.30 0.35 0.03 16 7 C -0.19 -1.71 10.60 -37.46 -0.40 -2.11 16 8 C -0.24 -2.89 6.31 -103.28 -0.65 -3.54 16 9 C 0.59 8.17 7.81 -12.54 -0.10 8.07 16 10 O -0.55 -8.96 14.50 5.27 0.08 -8.88 16 11 N -0.72 -9.00 5.28 -61.40 -0.32 -9.33 16 12 C 0.13 1.80 5.06 -4.05 -0.02 1.78 16 13 C -0.11 -1.72 2.46 -90.62 -0.22 -1.95 16 14 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.14 -2.11 8.94 37.16 0.33 -1.78 16 16 C 0.16 3.21 5.65 -4.04 -0.02 3.18 16 17 N -0.73 -18.37 5.33 -59.91 -0.32 -18.68 16 18 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.13 1.58 5.52 -51.93 -0.29 1.29 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.16 1.09 7.74 -52.48 -0.41 0.68 16 35 H 0.40 4.21 6.82 -40.82 -0.28 3.94 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.38 10.01 6.85 -40.82 -0.28 9.74 16 44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -32.91 364.60 -7.13 -40.03 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.04 Total: 8.27 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.80 Total: -5.27 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.08 Total: -55.50 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.16 Total: -10.52 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.91 -7.13 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753644872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.710 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds