Wall clock time and date at job start Tue Mar 31 2020 07:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.50706 * 109.47103 * 120.00171 * 2 1 3 5 5 O 1.33655 * 125.80028 * 299.97338 * 4 2 1 6 6 C 1.34214 * 110.90867 * 180.02562 * 5 4 2 7 7 C 1.34177 * 109.12112 * 0.26473 * 6 5 4 8 8 C 1.36415 * 125.80203 * 119.99934 * 4 2 1 9 9 C 1.47376 * 127.19139 * 359.95585 * 8 4 2 10 10 O 1.21610 * 120.00412 * 0.02562 * 9 8 4 11 11 N 1.34781 * 119.99696 * 180.02562 * 9 8 4 12 12 C 1.46497 * 119.99833 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47133 * 179.97438 * 12 11 9 14 14 H 1.08992 * 109.47543 * 54.99925 * 13 12 11 15 15 C 1.53002 * 109.47236 * 294.99627 * 13 12 11 16 16 C 1.53000 * 109.47247 * 175.00105 * 13 12 11 17 17 N 1.46498 * 109.47565 * 184.99760 * 16 13 12 18 18 C 1.36935 * 120.00646 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99630 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00473 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99838 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00241 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46807 * 90.00338 * 22 20 18 24 24 H 1.48497 * 109.47186 * 210.00051 * 22 20 18 25 25 H 1.48498 * 109.47214 * 330.00746 * 22 20 18 26 26 H 1.09001 * 109.46635 * 300.00154 * 1 2 3 27 27 H 1.08998 * 109.47040 * 60.00100 * 1 2 3 28 28 H 1.08996 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47225 * 239.99872 * 2 1 3 30 30 H 1.09002 * 109.46788 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47054 * 299.99892 * 3 2 1 32 32 H 1.09001 * 109.47007 * 60.00077 * 3 2 1 33 33 H 1.08002 * 125.43487 * 179.97438 * 6 5 4 34 34 H 1.08005 * 127.01648 * 179.69756 * 7 6 5 35 35 H 0.96998 * 119.99795 * 359.97438 * 11 9 8 36 36 H 1.09005 * 109.47194 * 300.00202 * 12 11 9 37 37 H 1.09006 * 109.47143 * 59.99731 * 12 11 9 38 38 H 1.09000 * 109.47232 * 179.97438 * 15 13 12 39 39 H 1.09000 * 109.47431 * 300.00605 * 15 13 12 40 40 H 1.09001 * 109.46859 * 59.99676 * 15 13 12 41 41 H 1.08998 * 109.46974 * 305.00305 * 16 13 12 42 42 H 1.08997 * 109.47423 * 64.99963 * 16 13 12 43 43 H 0.97008 * 119.99298 * 0.02562 * 17 16 13 44 44 H 0.97000 * 120.00163 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 1.7824 -0.3561 2.4947 6 6 2.3777 -1.1973 3.3546 7 6 3.0460 -2.1327 2.6628 8 6 2.8199 -1.8243 1.2433 9 6 3.3399 -2.5611 0.0776 10 8 3.0735 -2.1850 -1.0478 11 7 4.1106 -3.6518 0.2589 12 6 4.6279 -4.3840 -0.8997 13 6 5.4669 -5.5702 -0.4204 14 1 4.8725 -6.1870 0.2534 15 6 6.7040 -5.0547 0.3178 16 6 5.9036 -6.4060 -1.6252 17 7 6.6047 -7.6051 -1.1595 18 6 7.0903 -8.5097 -2.0656 19 1 6.9567 -8.3390 -3.1237 20 6 7.7551 -9.6455 -1.6244 21 7 7.9183 -9.8533 -0.3349 22 14 8.4180 -10.8792 -2.8604 23 1 9.8086 -10.5113 -3.2297 24 1 8.4083 -12.2368 -2.2587 25 1 7.5643 -10.8700 -4.0755 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.3304 -1.1290 4.4314 34 1 3.6295 -2.9470 3.0665 35 1 4.3234 -3.9515 1.1566 36 1 3.7948 -4.7472 -1.5015 37 1 5.2485 -3.7200 -1.5016 38 1 7.3015 -5.8998 0.6597 39 1 7.2985 -4.4378 -0.3560 40 1 6.3929 -4.4592 1.1762 41 1 5.0260 -6.6990 -2.2014 42 1 6.5707 -5.8163 -2.2540 43 1 6.7243 -7.7585 -0.2092 44 1 8.3825 -10.6472 -0.0265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753644872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:58 Heat of formation + Delta-G solvation = -55.560481 kcal Electronic energy + Delta-G solvation = -23178.071331 eV Core-core repulsion = 19709.768697 eV Total energy + Delta-G solvation = -3468.302633 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.58434 -40.59036 -38.25850 -36.53616 -35.88815 -34.35786 -33.56764 -31.83997 -30.09432 -28.10528 -27.88709 -27.22776 -24.95681 -23.68547 -23.42833 -21.62960 -21.44248 -20.55781 -19.23485 -18.61052 -17.27198 -17.20341 -16.89480 -16.46390 -16.42571 -15.89573 -15.62163 -15.44550 -15.37813 -14.99954 -14.56558 -14.20117 -14.05138 -13.93568 -13.64687 -13.61182 -13.53056 -13.08801 -12.96809 -12.79863 -12.28910 -12.21641 -12.20146 -12.15870 -12.00954 -11.99660 -11.70143 -11.65637 -10.95580 -10.93525 -10.84126 -10.13416 -9.54707 -8.99817 -7.95800 -5.24096 0.32318 1.13768 1.47650 1.49079 1.57635 1.81126 2.23358 2.30771 2.56857 3.37960 3.48493 3.69083 3.76341 3.84815 3.94998 4.01307 4.06485 4.11791 4.32948 4.36457 4.53161 4.56897 4.67732 4.69624 4.72982 4.77618 4.87717 4.89233 4.92834 4.97220 5.02827 5.11567 5.13562 5.26873 5.27150 5.32642 5.36787 5.43914 5.49674 5.49880 6.05468 6.27028 6.52377 7.17805 7.33794 8.08741 8.33223 9.27761 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034043 B = 0.002469 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.300275 B =11337.755099 C =11836.112172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.140 4.140 4 C 0.080 3.920 5 O -0.177 6.177 6 C -0.029 4.029 7 C -0.200 4.200 8 C -0.270 4.270 9 C 0.584 3.416 10 O -0.578 6.578 11 N -0.707 5.707 12 C 0.140 3.860 13 C -0.094 4.094 14 H 0.078 0.922 15 C -0.135 4.135 16 C 0.157 3.843 17 N -0.741 5.741 18 C -0.246 4.246 19 H 0.074 0.926 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.973 3.027 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.271 1.271 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.249 0.751 34 H 0.178 0.822 35 H 0.412 0.588 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.020 0.980 42 H 0.022 0.978 43 H 0.376 0.624 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 23.075 8.751 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.059 4.059 3 C -0.198 4.198 4 C 0.026 3.974 5 O -0.072 6.072 6 C -0.094 4.094 7 C -0.219 4.219 8 C -0.274 4.274 9 C 0.374 3.626 10 O -0.460 6.460 11 N -0.358 5.358 12 C 0.015 3.985 13 C -0.113 4.113 14 H 0.096 0.904 15 C -0.192 4.192 16 C 0.030 3.970 17 N -0.385 5.385 18 C -0.378 4.378 19 H 0.092 0.908 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.802 3.198 23 H -0.214 1.214 24 H -0.221 1.221 25 H -0.196 1.196 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.126 0.874 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.265 0.735 34 H 0.195 0.805 35 H 0.249 0.751 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.038 0.962 42 H 0.040 0.960 43 H 0.209 0.791 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.310 23.495 7.871 28.614 hybrid contribution 0.944 -1.550 0.137 1.820 sum -13.365 21.945 8.007 26.913 Atomic orbital electron populations 1.21813 0.92145 1.02184 1.03647 1.20335 0.97670 0.96978 0.90904 1.21811 1.00926 0.93376 1.03643 1.23022 0.95562 0.94000 0.84795 1.83763 1.59916 1.48688 1.14873 1.24701 0.97304 0.90513 0.96890 1.23170 1.05230 1.03465 0.90005 1.21227 1.09881 1.01760 0.94570 1.17523 0.77576 0.79930 0.87602 1.90687 1.60734 1.68726 1.25900 1.45689 1.51212 1.28126 1.10765 1.21165 0.97072 0.92412 0.87824 1.21330 0.97094 0.95249 0.97640 0.90360 1.21722 0.96748 1.00617 1.00160 1.20713 0.94303 0.87196 0.94751 1.42510 1.67551 1.22448 1.05970 1.19628 1.27936 1.00154 0.90092 0.90847 1.25548 1.02596 1.00792 0.97767 1.69803 1.48925 1.29345 1.13837 0.85143 0.78245 0.78104 0.78292 1.21367 1.22058 1.19595 0.91373 0.89937 0.93289 0.87436 0.93224 0.89942 0.91381 0.73478 0.80482 0.75113 0.91935 0.91592 0.93728 0.92937 0.90785 0.96205 0.95996 0.79077 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.18 71.98 0.66 -1.51 16 2 C -0.04 -0.79 3.25 -11.54 -0.04 -0.83 16 3 C -0.14 -2.15 9.18 71.98 0.66 -1.48 16 4 C 0.08 1.70 5.88 25.26 0.15 1.85 16 5 O -0.18 -3.13 10.52 4.46 0.05 -3.08 16 6 C -0.03 -0.37 12.03 66.89 0.80 0.44 16 7 C -0.20 -3.18 10.60 23.65 0.25 -2.93 16 8 C -0.27 -6.19 6.31 -18.99 -0.12 -6.31 16 9 C 0.58 16.12 7.81 86.65 0.68 16.80 16 10 O -0.58 -19.42 14.50 -4.06 -0.06 -19.48 16 11 N -0.71 -17.09 5.28 -466.41 -2.46 -19.55 16 12 C 0.14 3.85 5.06 86.38 0.44 4.29 16 13 C -0.09 -2.86 2.46 -10.79 -0.03 -2.89 16 14 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 15 C -0.14 -3.90 8.94 71.98 0.64 -3.26 16 16 C 0.16 6.27 5.65 86.38 0.49 6.76 16 17 N -0.74 -37.55 5.33 -343.46 -1.83 -39.38 16 18 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 19 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 21 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 22 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 2.67 5.52 -2.39 -0.01 2.65 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.25 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.18 1.94 7.74 -2.91 -0.02 1.91 16 35 H 0.41 7.93 6.82 -92.71 -0.63 7.29 16 36 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.04 1.53 7.18 -2.39 -0.02 1.51 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.65 7.18 -2.39 -0.02 1.63 16 41 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.38 19.94 6.85 -92.70 -0.64 19.31 16 44 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -71.31 364.60 3.63 -67.67 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.27 Total: 30.16 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.89 Total: -5.96 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -4.01 Total: -117.68 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.01 Total: -22.56 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -71.31 3.63 -67.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753644872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.114 kcal (2) G-P(sol) polarization free energy of solvation -71.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds