Wall clock time and date at job start Tue Mar 31 2020 07:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 5 5 C 1.36938 * 119.99589 * 85.00438 * 4 2 1 6 6 H 1.07999 * 120.00325 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99408 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00325 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99550 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47349 * 59.99998 * 9 7 5 11 11 H 1.48505 * 109.47077 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47093 * 299.99919 * 9 7 5 13 13 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 14 14 H 1.09003 * 110.88865 * 63.87691 * 13 2 1 15 15 C 1.55151 * 111.00618 * 187.80138 * 13 2 1 16 16 C 1.54319 * 102.94504 * 153.57156 * 15 13 2 17 17 N 1.47027 * 107.27156 * 337.81084 * 16 15 13 18 18 C 1.34772 * 125.64688 * 178.97924 * 17 16 15 19 19 O 1.21285 * 119.99657 * 179.97438 * 18 17 16 20 20 C 1.50703 * 120.00340 * 359.94991 * 18 17 16 21 21 H 1.08993 * 115.50866 * 34.42396 * 20 18 17 22 22 C 1.52997 * 117.43279 * 179.79076 * 20 18 17 23 23 H 1.09000 * 119.81001 * 354.35580 * 22 20 18 24 24 C 1.54472 * 118.06716 * 198.08545 * 22 20 18 25 25 O 1.44428 * 104.80353 * 321.13187 * 24 22 20 26 26 C 1.44418 * 105.27551 * 319.48478 * 25 24 22 27 27 C 1.53002 * 117.43300 * 249.04903 * 20 18 17 28 28 H 1.08999 * 119.80514 * 4.63436 * 27 20 18 29 29 C 1.47422 * 108.69932 * 358.93474 * 17 16 15 30 30 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 32 32 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 33 33 H 0.96995 * 120.00050 * 264.72646 * 4 2 1 34 34 H 0.97000 * 119.99693 * 180.02562 * 8 7 5 35 35 H 1.09000 * 110.72435 * 271.94250 * 15 13 2 36 36 H 1.09009 * 110.72064 * 35.21177 * 15 13 2 37 37 H 1.09003 * 109.88687 * 218.39315 * 16 15 13 38 38 H 1.08997 * 109.88410 * 97.22323 * 16 15 13 39 39 H 1.09003 * 110.37057 * 79.96501 * 24 22 20 40 40 H 1.09005 * 110.37492 * 202.30117 * 24 22 20 41 41 H 1.09001 * 110.37156 * 159.33972 * 26 25 24 42 42 H 1.09000 * 110.37313 * 281.56979 * 26 25 24 43 43 H 1.08995 * 110.37277 * 265.28942 * 29 17 16 44 44 H 1.09003 * 110.35969 * 142.96885 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1490 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6122 -0.6616 -3.5091 8 7 2.9251 -1.9387 -3.4501 9 14 2.7900 0.2702 -5.1183 10 1 3.7444 1.3933 -4.9372 11 1 3.2990 -0.6481 -6.1685 12 1 1.4672 0.8060 -5.5287 13 6 2.0400 -0.7214 1.2492 14 1 1.7468 -1.7712 1.2386 15 6 3.5783 -0.5742 1.3873 16 6 3.8035 -0.7115 2.9078 17 7 2.5331 -0.3791 3.5691 18 6 2.3106 -0.3993 4.8981 19 8 1.2181 -0.1044 5.3346 20 6 3.4191 -0.7888 5.8419 21 1 4.4213 -0.4850 5.5398 22 6 3.1034 -0.7870 7.3390 23 1 2.1373 -0.4228 7.6886 24 6 4.2868 -0.7596 8.3313 25 8 5.2845 -1.6201 7.7398 26 6 4.5499 -2.7423 7.2044 27 6 3.2793 -2.1205 6.5821 28 1 2.4400 -2.7791 6.3586 29 6 1.5434 -0.0191 2.5375 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.2527 -1.6308 -1.1518 34 1 3.2491 -2.3957 -4.2419 35 1 4.0919 -1.3699 0.8479 36 1 3.9052 0.4046 1.0360 37 1 4.5817 -0.0202 3.2313 38 1 4.0902 -1.7350 3.1491 39 1 4.6729 0.2547 8.4335 40 1 3.9776 -1.1482 9.3017 41 1 5.1380 -3.2513 6.4407 42 1 4.2827 -3.4361 8.0015 43 1 1.5193 1.0613 2.3954 44 1 0.5558 -0.3882 2.8142 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754797383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:16 Heat of formation + Delta-G solvation = -35.329700 kcal Electronic energy + Delta-G solvation = -23797.392642 eV Core-core repulsion = 20329.967281 eV Total energy + Delta-G solvation = -3467.425361 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.06859 -39.60543 -37.76418 -35.22792 -34.62490 -32.45297 -30.56777 -29.35057 -29.08835 -27.74717 -26.56238 -24.53666 -23.28248 -21.65686 -21.33315 -21.00346 -19.64418 -19.06273 -17.80317 -17.06823 -16.39293 -16.25957 -16.04027 -15.52299 -14.97253 -14.82324 -14.22132 -13.86707 -13.58732 -13.37236 -13.15483 -12.96342 -12.72903 -12.64344 -12.41820 -12.14294 -12.04659 -11.91661 -11.74402 -11.24156 -10.88663 -10.74067 -10.66528 -10.59899 -10.56135 -10.40400 -10.24473 -10.11059 -9.94570 -9.80283 -9.64678 -8.92802 -8.63830 -6.98648 -5.78750 -3.07261 2.27209 2.78186 3.30973 3.42418 3.47424 3.47833 3.55852 4.17151 4.27831 4.41964 4.50393 4.54499 4.69333 4.79207 4.92728 5.01596 5.05245 5.12057 5.22836 5.30913 5.32321 5.37161 5.49964 5.52564 5.54389 5.67624 5.70456 5.85485 5.88533 5.95997 6.05096 6.20189 6.21819 6.32880 6.35850 6.44271 6.55545 6.62376 6.85508 7.08035 7.48805 7.67985 8.08321 8.39822 9.51231 10.08102 10.43169 11.43829 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031251 B = 0.002890 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.744192 B = 9687.898689 C =10199.509070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.117 4.117 16 C 0.098 3.902 17 N -0.610 5.610 18 C 0.558 3.442 19 O -0.545 6.545 20 C -0.140 4.140 21 H 0.126 0.874 22 C -0.168 4.168 23 H 0.136 0.864 24 C 0.071 3.929 25 O -0.373 6.373 26 C 0.073 3.927 27 C -0.172 4.172 28 H 0.129 0.871 29 C 0.114 3.886 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.023 -0.034 21.870 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.155 4.155 16 C -0.025 4.025 17 N -0.343 5.343 18 C 0.347 3.653 19 O -0.423 6.423 20 C -0.161 4.161 21 H 0.144 0.856 22 C -0.187 4.187 23 H 0.154 0.846 24 C -0.005 4.005 25 O -0.292 6.292 26 C -0.004 4.004 27 C -0.191 4.191 28 H 0.147 0.853 29 C -0.008 4.008 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.691 0.269 22.025 22.190 hybrid contribution -0.097 0.099 -1.093 1.102 sum 2.594 0.368 20.932 21.095 Atomic orbital electron populations 1.22499 0.99251 1.00980 1.00088 1.20129 0.91807 0.95138 0.85410 0.93291 1.42361 1.78111 1.10736 1.05100 1.19173 1.36505 0.93836 0.87309 0.91286 1.24715 1.02219 0.95951 0.97984 1.69643 1.50910 1.08641 1.28994 0.86296 0.77773 0.78608 0.83672 1.21301 1.21745 1.21333 1.22664 0.94954 1.00545 0.94000 0.90042 1.22598 0.96645 1.04026 0.92207 1.22198 0.85588 1.00444 0.94249 1.48459 1.14119 1.66821 1.04890 1.19057 0.87870 0.77363 0.81040 1.90694 1.25386 1.49771 1.76474 1.22043 0.99886 1.01473 0.92705 0.85647 1.24000 1.01925 1.01740 0.91002 0.84596 1.22999 0.86896 0.95815 0.94831 1.89178 1.29937 1.34124 1.75970 1.22987 0.90820 0.89272 0.97321 1.24003 1.01450 0.90420 1.03241 0.85306 1.22345 0.92367 0.99774 0.86340 0.93446 0.94368 0.92709 0.78291 0.93492 0.89363 0.90248 0.91545 0.91374 0.88409 0.90749 0.88264 0.90740 0.91198 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.27 37.16 0.34 -2.62 16 2 C 0.19 3.45 2.42 -67.93 -0.16 3.29 16 3 H 0.05 0.93 8.02 -51.93 -0.42 0.52 16 4 N -0.72 -17.05 4.97 -53.42 -0.27 -17.32 16 5 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 9 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C -0.10 -1.56 2.65 -88.47 -0.23 -1.80 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.12 -1.64 6.28 -24.90 -0.16 -1.80 16 16 C 0.10 1.15 6.28 -3.06 -0.02 1.13 16 17 N -0.61 -8.23 3.33 -170.52 -0.57 -8.80 16 18 C 0.56 7.80 7.63 -10.99 -0.08 7.72 16 19 O -0.55 -9.35 16.60 5.55 0.09 -9.26 16 20 C -0.14 -1.51 4.91 -91.77 -0.45 -1.96 16 21 H 0.13 1.27 7.65 -51.93 -0.40 0.88 16 22 C -0.17 -1.58 6.68 -89.15 -0.60 -2.17 16 23 H 0.14 1.36 7.82 -51.93 -0.41 0.95 16 24 C 0.07 0.55 7.53 37.93 0.29 0.84 16 25 O -0.37 -3.57 11.31 -35.23 -0.40 -3.96 16 26 C 0.07 0.56 7.54 37.97 0.29 0.84 16 27 C -0.17 -1.56 6.94 -89.11 -0.62 -2.18 16 28 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 29 C 0.11 1.64 5.27 -2.53 -0.01 1.62 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.57 7.23 -51.93 -0.38 0.20 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.38 9.65 7.80 -40.82 -0.32 9.34 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.08 1.17 7.99 -51.92 -0.42 0.75 16 37 H 0.07 0.68 8.06 -51.93 -0.42 0.27 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 44 H 0.08 1.15 7.94 -51.93 -0.41 0.74 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -31.33 357.08 -9.07 -40.40 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.35 Total: 7.32 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.67 Total: -4.02 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.11 Total: -52.80 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.31 Total: -13.22 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.33 -9.07 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754797383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.072 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds