Wall clock time and date at job start Tue Mar 31 2020 07:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 5 5 C 1.36938 * 119.99589 * 85.00438 * 4 2 1 6 6 H 1.07999 * 120.00325 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99408 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00325 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99550 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47349 * 59.99998 * 9 7 5 11 11 H 1.48505 * 109.47077 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47093 * 299.99919 * 9 7 5 13 13 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 14 14 H 1.09003 * 110.88865 * 63.87691 * 13 2 1 15 15 C 1.55151 * 111.00618 * 187.80138 * 13 2 1 16 16 C 1.54319 * 102.94504 * 153.57156 * 15 13 2 17 17 N 1.47027 * 107.27156 * 337.81084 * 16 15 13 18 18 C 1.34772 * 125.64688 * 178.97924 * 17 16 15 19 19 O 1.21285 * 119.99657 * 179.97438 * 18 17 16 20 20 C 1.50703 * 120.00340 * 359.94991 * 18 17 16 21 21 H 1.08993 * 115.50866 * 34.42396 * 20 18 17 22 22 C 1.52997 * 117.43279 * 179.79076 * 20 18 17 23 23 H 1.09000 * 119.81001 * 354.35580 * 22 20 18 24 24 C 1.54472 * 118.06716 * 198.08545 * 22 20 18 25 25 O 1.44428 * 104.80353 * 321.13187 * 24 22 20 26 26 C 1.44418 * 105.27551 * 319.48478 * 25 24 22 27 27 C 1.53002 * 117.43300 * 249.04903 * 20 18 17 28 28 H 1.08999 * 119.80514 * 4.63436 * 27 20 18 29 29 C 1.47422 * 108.69932 * 358.93474 * 17 16 15 30 30 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 32 32 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 33 33 H 0.96995 * 120.00050 * 264.72646 * 4 2 1 34 34 H 0.97000 * 119.99693 * 180.02562 * 8 7 5 35 35 H 1.09000 * 110.72435 * 271.94250 * 15 13 2 36 36 H 1.09009 * 110.72064 * 35.21177 * 15 13 2 37 37 H 1.09003 * 109.88687 * 218.39315 * 16 15 13 38 38 H 1.08997 * 109.88410 * 97.22323 * 16 15 13 39 39 H 1.09003 * 110.37057 * 79.96501 * 24 22 20 40 40 H 1.09005 * 110.37492 * 202.30117 * 24 22 20 41 41 H 1.09001 * 110.37156 * 159.33972 * 26 25 24 42 42 H 1.09000 * 110.37313 * 281.56979 * 26 25 24 43 43 H 1.08995 * 110.37277 * 265.28942 * 29 17 16 44 44 H 1.09003 * 110.35969 * 142.96885 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1490 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6122 -0.6616 -3.5091 8 7 2.9251 -1.9387 -3.4501 9 14 2.7900 0.2702 -5.1183 10 1 3.7444 1.3933 -4.9372 11 1 3.2990 -0.6481 -6.1685 12 1 1.4672 0.8060 -5.5287 13 6 2.0400 -0.7214 1.2492 14 1 1.7468 -1.7712 1.2386 15 6 3.5783 -0.5742 1.3873 16 6 3.8035 -0.7115 2.9078 17 7 2.5331 -0.3791 3.5691 18 6 2.3106 -0.3993 4.8981 19 8 1.2181 -0.1044 5.3346 20 6 3.4191 -0.7888 5.8419 21 1 4.4213 -0.4850 5.5398 22 6 3.1034 -0.7870 7.3390 23 1 2.1373 -0.4228 7.6886 24 6 4.2868 -0.7596 8.3313 25 8 5.2845 -1.6201 7.7398 26 6 4.5499 -2.7423 7.2044 27 6 3.2793 -2.1205 6.5821 28 1 2.4400 -2.7791 6.3586 29 6 1.5434 -0.0191 2.5375 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.2527 -1.6308 -1.1518 34 1 3.2491 -2.3957 -4.2419 35 1 4.0919 -1.3699 0.8479 36 1 3.9052 0.4046 1.0360 37 1 4.5817 -0.0202 3.2313 38 1 4.0902 -1.7350 3.1491 39 1 4.6729 0.2547 8.4335 40 1 3.9776 -1.1482 9.3017 41 1 5.1380 -3.2513 6.4407 42 1 4.2827 -3.4361 8.0015 43 1 1.5193 1.0613 2.3954 44 1 0.5558 -0.3882 2.8142 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754797383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:15 Heat of formation + Delta-G solvation = -55.186580 kcal Electronic energy + Delta-G solvation = -23798.253701 eV Core-core repulsion = 20329.967281 eV Total energy + Delta-G solvation = -3468.286420 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89528 -40.61074 -38.98030 -36.80357 -35.38838 -34.24127 -31.96857 -30.84600 -29.67748 -29.09635 -27.48311 -26.14236 -24.66027 -22.81214 -22.40838 -21.69501 -21.07975 -20.01429 -19.18325 -18.60041 -17.50086 -17.21385 -16.81227 -16.55411 -16.15808 -15.89251 -15.57171 -15.39629 -14.88124 -14.64669 -14.48487 -14.01507 -13.89722 -13.81785 -13.51786 -13.42841 -13.20173 -12.90285 -12.78694 -12.74243 -12.57301 -12.32760 -12.22368 -11.96505 -11.69638 -11.56286 -11.46619 -11.35311 -11.26392 -11.03276 -10.90281 -10.60757 -9.73970 -8.97382 -7.90423 -5.17524 1.27982 1.49581 1.51164 1.57045 1.78036 2.51556 2.58683 2.88107 3.33481 3.43545 3.56040 3.58343 3.65146 3.70091 3.83323 3.84473 4.02130 4.21805 4.28229 4.31523 4.36283 4.50251 4.51142 4.59977 4.66320 4.69343 4.73878 4.77191 4.82324 4.85905 4.87655 4.95720 4.96090 5.04481 5.15590 5.20218 5.31467 5.37647 5.55159 5.59847 5.74000 6.31637 6.42306 7.00116 7.38768 8.14412 8.38245 9.32709 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031251 B = 0.002890 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.744192 B = 9687.898689 C =10199.509070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.047 0.953 4 N -0.731 5.731 5 C -0.233 4.233 6 H 0.073 0.927 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.966 3.034 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.282 1.282 13 C -0.093 4.093 14 H 0.075 0.925 15 C -0.114 4.114 16 C 0.106 3.894 17 N -0.611 5.611 18 C 0.556 3.444 19 O -0.583 6.583 20 C -0.150 4.150 21 H 0.135 0.865 22 C -0.168 4.168 23 H 0.127 0.873 24 C 0.074 3.926 25 O -0.391 6.391 26 C 0.075 3.925 27 C -0.164 4.164 28 H 0.127 0.873 29 C 0.120 3.880 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.796 0.331 23.432 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 H 0.065 0.935 4 N -0.371 5.371 5 C -0.365 4.365 6 H 0.091 0.909 7 C -0.265 4.265 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.204 1.204 11 H -0.224 1.224 12 H -0.209 1.209 13 C -0.112 4.112 14 H 0.094 0.906 15 C -0.152 4.152 16 C -0.016 4.016 17 N -0.343 5.343 18 C 0.346 3.654 19 O -0.464 6.464 20 C -0.171 4.171 21 H 0.153 0.847 22 C -0.187 4.187 23 H 0.145 0.855 24 C -0.002 4.002 25 O -0.311 6.311 26 C -0.002 4.002 27 C -0.183 4.183 28 H 0.145 0.855 29 C -0.003 4.003 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.127 0.873 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.463 0.665 23.613 23.875 hybrid contribution -0.396 0.017 -1.513 1.564 sum 3.068 0.683 22.100 22.322 Atomic orbital electron populations 1.22372 0.98224 1.00801 1.00593 1.20294 0.92350 0.94905 0.85045 0.93469 1.42508 1.78279 1.10369 1.05907 1.19522 1.34605 0.94068 0.88326 0.90909 1.25435 1.03238 0.96800 1.01066 1.69790 1.52732 1.10045 1.29332 0.85326 0.77781 0.77413 0.79930 1.20435 1.22438 1.20885 1.22440 0.96047 0.99777 0.92983 0.90618 1.22522 0.95325 1.03263 0.94055 1.22219 0.85217 1.02081 0.92105 1.48514 1.14410 1.66549 1.04864 1.19590 0.88132 0.76480 0.81221 1.90671 1.27144 1.51535 1.77063 1.21967 0.98864 1.03360 0.92893 0.84746 1.24054 1.02294 1.01837 0.90494 0.85544 1.23115 0.85858 0.96324 0.94898 1.89164 1.30796 1.34833 1.76263 1.23128 0.89969 0.89007 0.98061 1.24091 1.02214 0.89996 1.01964 0.85465 1.22182 0.92415 0.99682 0.86014 0.93965 0.91558 0.94434 0.79461 0.94179 0.90334 0.90897 0.89441 0.89723 0.87585 0.88786 0.87300 0.88793 0.90932 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.55 9.27 71.98 0.67 -4.88 16 2 C 0.18 6.74 2.42 44.99 0.11 6.85 16 3 H 0.05 1.77 8.02 -2.39 -0.02 1.75 16 4 N -0.73 -34.74 4.97 -322.93 -1.61 -36.34 16 5 C -0.23 -12.46 9.93 84.03 0.83 -11.62 16 6 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 7 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 8 N -0.97 -57.68 13.06 21.65 0.28 -57.40 16 9 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 C -0.09 -2.79 2.65 -9.40 -0.02 -2.81 16 14 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 15 C -0.11 -3.09 6.28 31.78 0.20 -2.89 16 16 C 0.11 2.26 6.28 86.73 0.54 2.81 16 17 N -0.61 -15.64 3.33 -811.79 -2.70 -18.34 16 18 C 0.56 14.92 7.63 87.66 0.67 15.59 16 19 O -0.58 -19.80 16.60 -3.05 -0.05 -19.85 16 20 C -0.15 -2.97 4.91 -11.54 -0.06 -3.03 16 21 H 0.13 2.41 7.65 -2.39 -0.02 2.39 16 22 C -0.17 -2.87 6.68 -9.84 -0.07 -2.94 16 23 H 0.13 2.43 7.82 -2.39 -0.02 2.41 16 24 C 0.07 0.96 7.53 72.48 0.55 1.51 16 25 O -0.39 -6.42 11.31 -148.98 -1.69 -8.10 16 26 C 0.07 0.93 7.54 72.51 0.55 1.48 16 27 C -0.16 -2.64 6.94 -9.82 -0.07 -2.71 16 28 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 29 C 0.12 3.32 5.27 86.86 0.46 3.78 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.91 7.23 -2.39 -0.02 1.89 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.37 19.12 7.80 -92.71 -0.72 18.40 16 34 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.08 7.99 -2.38 -0.02 2.06 16 37 H 0.09 1.56 8.06 -2.39 -0.02 1.54 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 44 H 0.07 2.06 7.94 -2.39 -0.02 2.04 16 Total: -1.00 -66.97 357.08 1.35 -65.62 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.26 Total: 29.55 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 4.83 Total: -2.49 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -4.02 Total: -112.08 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -1.74 Total: -27.95 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -66.97 1.35 -65.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754797383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.433 kcal (2) G-P(sol) polarization free energy of solvation -66.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds