Wall clock time and date at job start Tue Mar 31 2020 07:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47160 * 2 1 4 4 N 1.46492 * 109.47173 * 119.99853 * 2 1 3 5 5 C 1.36939 * 120.00122 * 275.00420 * 4 2 1 6 6 H 1.07995 * 119.99949 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99947 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00108 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99995 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47280 * 59.99225 * 9 7 5 11 11 H 1.48495 * 109.47443 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46970 * 299.99596 * 9 7 5 13 13 C 1.52998 * 109.47210 * 239.99823 * 2 1 3 14 14 H 1.08997 * 110.91687 * 296.10254 * 13 2 1 15 15 C 1.55155 * 111.00715 * 172.19346 * 13 2 1 16 16 C 1.54309 * 102.86814 * 206.23168 * 15 13 2 17 17 N 1.47021 * 107.27479 * 22.52646 * 16 15 13 18 18 C 1.34777 * 125.64803 * 180.96740 * 17 16 15 19 19 O 1.21283 * 119.99912 * 179.68682 * 18 17 16 20 20 C 1.50701 * 120.00039 * 359.69762 * 18 17 16 21 21 H 1.09002 * 115.51205 * 34.41284 * 20 18 17 22 22 C 1.53000 * 117.43267 * 179.78557 * 20 18 17 23 23 H 1.09001 * 119.80802 * 355.31108 * 22 20 18 24 24 C 1.54480 * 118.06710 * 199.04292 * 22 20 18 25 25 O 1.46773 * 103.67391 * 272.63575 * 24 22 20 26 26 C 1.44425 * 105.42052 * 40.61802 * 25 24 22 27 27 C 1.53002 * 117.38320 * 249.11874 * 20 18 17 28 28 H 1.08999 * 119.80841 * 4.60573 * 27 20 18 29 29 C 1.47423 * 108.70116 * 0.70584 * 17 16 15 30 30 H 1.08995 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47136 * 300.00353 * 1 2 3 32 32 H 1.09005 * 109.46757 * 60.00161 * 1 2 3 33 33 H 0.97002 * 120.00217 * 95.00144 * 4 2 1 34 34 H 0.97001 * 119.99547 * 180.02562 * 8 7 5 35 35 H 1.09005 * 110.72271 * 324.79205 * 15 13 2 36 36 H 1.09001 * 110.71968 * 88.05789 * 15 13 2 37 37 H 1.08998 * 109.98674 * 263.05147 * 16 15 13 38 38 H 1.09002 * 109.77884 * 141.88670 * 16 15 13 39 39 H 1.09000 * 110.36904 * 32.00140 * 24 22 20 40 40 H 1.09000 * 110.37305 * 154.34302 * 24 22 20 41 41 H 1.09003 * 110.37408 * 200.45967 * 26 25 24 42 42 H 1.08999 * 110.37329 * 78.12844 * 26 25 24 43 43 H 1.08998 * 110.37077 * 94.94138 * 29 17 16 44 44 H 1.09005 * 110.36578 * 217.15160 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1491 -0.0074 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6123 -0.6617 3.5090 8 7 2.9254 -1.9387 3.4499 9 14 2.7913 0.2704 5.1179 10 1 1.4691 0.8072 5.5288 11 1 3.3001 -0.6480 6.1681 12 1 3.7465 1.3928 4.9361 13 6 2.0400 -0.7213 -1.2492 14 1 1.7474 -1.7712 -1.2391 15 6 3.5784 -0.5739 -1.3874 16 6 3.8020 -0.7165 -2.9076 17 7 2.5332 -0.3788 -3.5691 18 6 2.3103 -0.4003 -4.8981 19 8 1.2175 -0.1066 -5.3345 20 6 3.4188 -0.7895 -5.8419 21 1 4.1067 -1.5490 -5.4704 22 6 3.0997 -0.7990 -7.3383 23 1 2.0818 -0.6050 -7.6765 24 6 4.0309 -1.6002 -8.2749 25 8 5.0895 -0.6420 -8.6145 26 6 5.3776 0.0628 -7.3872 27 6 3.9969 0.3070 -6.7388 28 1 3.6566 1.3361 -6.6242 29 6 1.5434 -0.0189 -2.5375 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2491 -1.6317 1.1526 34 1 3.2487 -2.3959 4.2419 35 1 3.9052 0.4048 -1.0360 36 1 4.0920 -1.3697 -0.8480 37 1 4.0841 -1.7415 -3.1481 38 1 4.5834 -0.0290 -3.2315 39 1 4.4338 -2.4700 -7.7561 40 1 3.4934 -1.9077 -9.1720 41 1 5.8696 1.0117 -7.6010 42 1 6.0001 -0.5497 -6.7350 43 1 1.5193 1.0615 -2.3954 44 1 0.5555 -0.3864 -2.8151 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754797384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:19 Heat of formation + Delta-G solvation = -35.141437 kcal Electronic energy + Delta-G solvation = -23716.783104 eV Core-core repulsion = 20249.365907 eV Total energy + Delta-G solvation = -3467.417197 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95818 -39.54802 -37.77710 -35.25380 -34.74822 -32.47301 -30.59720 -29.37355 -29.09010 -27.72307 -26.37307 -24.50390 -23.30889 -21.94559 -21.41973 -20.94632 -19.66440 -19.26217 -17.73954 -17.09143 -16.46911 -16.20537 -15.88642 -15.45958 -15.02422 -14.84443 -14.17392 -13.86289 -13.57577 -13.43063 -13.18815 -13.01929 -12.74297 -12.66805 -12.45875 -12.21451 -12.01618 -11.91789 -11.77998 -11.26423 -10.90123 -10.77687 -10.73187 -10.66838 -10.60411 -10.42524 -10.26292 -10.08138 -10.00414 -9.85833 -9.66533 -8.94301 -8.67814 -7.00252 -5.80259 -3.08847 2.20963 2.77639 3.25608 3.41184 3.46318 3.46707 3.57187 4.01558 4.19547 4.41895 4.50357 4.53243 4.65191 4.72777 4.75851 4.91255 4.95746 5.06044 5.24871 5.27998 5.30589 5.33131 5.45906 5.50687 5.61585 5.64435 5.73975 5.83415 5.85748 5.93297 6.02360 6.17101 6.18908 6.22439 6.32878 6.41887 6.52977 6.60557 6.83761 7.06371 7.44703 7.66535 8.04021 8.38312 9.49714 10.06485 10.41459 11.42295 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.002804 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.762707 B = 9981.974848 C =10441.364439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.117 4.117 16 C 0.098 3.902 17 N -0.610 5.610 18 C 0.557 3.443 19 O -0.543 6.543 20 C -0.145 4.145 21 H 0.124 0.876 22 C -0.161 4.161 23 H 0.134 0.866 24 C 0.073 3.927 25 O -0.376 6.376 26 C 0.075 3.925 27 C -0.166 4.166 28 H 0.127 0.873 29 C 0.114 3.886 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 1.539 -20.565 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.155 4.155 16 C -0.025 4.025 17 N -0.343 5.343 18 C 0.345 3.655 19 O -0.420 6.420 20 C -0.166 4.166 21 H 0.142 0.858 22 C -0.180 4.180 23 H 0.152 0.848 24 C -0.003 4.003 25 O -0.295 6.295 26 C -0.002 4.002 27 C -0.185 4.185 28 H 0.145 0.855 29 C -0.008 4.008 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.753 1.848 -20.942 21.356 hybrid contribution 0.019 0.083 1.373 1.376 sum 3.772 1.931 -19.569 20.023 Atomic orbital electron populations 1.22503 0.99254 1.00998 1.00099 1.20124 0.91802 0.95131 0.85407 0.93281 1.42361 1.78184 1.10643 1.05119 1.19169 1.36527 0.93832 0.87318 0.91286 1.24717 1.02195 0.95956 0.97996 1.69645 1.50906 1.08643 1.28988 0.86295 0.77782 0.78605 0.83657 1.21323 1.21739 1.21300 1.22668 0.94942 1.00574 0.94015 0.90021 1.22597 0.96677 1.04051 0.92147 1.22199 0.85722 1.00233 0.94362 1.48474 1.14146 1.66788 1.04913 1.19073 0.88001 0.77407 0.81059 1.90704 1.25326 1.49554 1.76460 1.22381 1.00042 1.02465 0.91692 0.85846 1.24156 1.01520 1.00519 0.91777 0.84778 1.23367 0.87071 0.91321 0.98533 1.89556 1.56431 1.52543 1.31012 1.22910 0.93646 0.97788 0.85838 1.24199 0.95939 0.96184 1.02130 0.85462 1.22350 0.92393 0.99786 0.86316 0.93434 0.92694 0.94374 0.78294 0.93485 0.90185 0.89372 0.91532 0.91440 0.91131 0.87915 0.88045 0.91609 0.91197 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.27 37.16 0.34 -2.59 16 2 C 0.19 3.41 2.42 -67.93 -0.16 3.25 16 3 H 0.05 0.92 8.02 -51.93 -0.42 0.51 16 4 N -0.72 -16.90 4.97 -53.43 -0.27 -17.16 16 5 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 6 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 9 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 C -0.10 -1.54 2.65 -88.47 -0.23 -1.77 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.12 -1.59 6.28 -24.91 -0.16 -1.75 16 16 C 0.10 1.07 6.30 -3.07 -0.02 1.05 16 17 N -0.61 -7.92 3.33 -170.53 -0.57 -8.49 16 18 C 0.56 7.51 7.63 -10.98 -0.08 7.42 16 19 O -0.54 -9.19 16.60 5.56 0.09 -9.09 16 20 C -0.14 -1.44 5.08 -91.77 -0.47 -1.90 16 21 H 0.12 1.01 7.67 -51.93 -0.40 0.61 16 22 C -0.16 -1.51 6.59 -89.05 -0.59 -2.10 16 23 H 0.13 1.40 7.81 -51.93 -0.41 1.00 16 24 C 0.07 0.57 7.60 37.93 0.29 0.86 16 25 O -0.38 -3.65 11.72 -35.23 -0.41 -4.06 16 26 C 0.07 0.58 7.45 37.93 0.28 0.86 16 27 C -0.17 -1.48 6.91 -89.05 -0.62 -2.10 16 28 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 29 C 0.11 1.60 5.27 -2.53 -0.01 1.58 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.57 7.23 -51.93 -0.38 0.19 16 33 H 0.38 9.57 7.80 -40.82 -0.32 9.25 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.08 1.14 7.99 -51.93 -0.42 0.73 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 0.64 7.98 -51.93 -0.41 0.23 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.97 8.04 -51.93 -0.42 0.56 16 44 H 0.08 1.14 7.94 -51.93 -0.41 0.73 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -31.33 357.47 -9.08 -40.42 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.35 Total: 6.78 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.67 Total: -4.07 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.11 Total: -52.18 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.32 Total: -13.15 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.33 -9.08 -40.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754797384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.274 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds