Wall clock time and date at job start Tue Mar 31 2020 07:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47160 * 2 1 4 4 N 1.46492 * 109.47173 * 119.99853 * 2 1 3 5 5 C 1.36939 * 120.00122 * 275.00420 * 4 2 1 6 6 H 1.07995 * 119.99949 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99947 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00108 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99995 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47280 * 59.99225 * 9 7 5 11 11 H 1.48495 * 109.47443 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46970 * 299.99596 * 9 7 5 13 13 C 1.52998 * 109.47210 * 239.99823 * 2 1 3 14 14 H 1.08997 * 110.91687 * 296.10254 * 13 2 1 15 15 C 1.55155 * 111.00715 * 172.19346 * 13 2 1 16 16 C 1.54309 * 102.86814 * 206.23168 * 15 13 2 17 17 N 1.47021 * 107.27479 * 22.52646 * 16 15 13 18 18 C 1.34777 * 125.64803 * 180.96740 * 17 16 15 19 19 O 1.21283 * 119.99912 * 179.68682 * 18 17 16 20 20 C 1.50701 * 120.00039 * 359.69762 * 18 17 16 21 21 H 1.09002 * 115.51205 * 34.41284 * 20 18 17 22 22 C 1.53000 * 117.43267 * 179.78557 * 20 18 17 23 23 H 1.09001 * 119.80802 * 355.31108 * 22 20 18 24 24 C 1.54480 * 118.06710 * 199.04292 * 22 20 18 25 25 O 1.46773 * 103.67391 * 272.63575 * 24 22 20 26 26 C 1.44425 * 105.42052 * 40.61802 * 25 24 22 27 27 C 1.53002 * 117.38320 * 249.11874 * 20 18 17 28 28 H 1.08999 * 119.80841 * 4.60573 * 27 20 18 29 29 C 1.47423 * 108.70116 * 0.70584 * 17 16 15 30 30 H 1.08995 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47136 * 300.00353 * 1 2 3 32 32 H 1.09005 * 109.46757 * 60.00161 * 1 2 3 33 33 H 0.97002 * 120.00217 * 95.00144 * 4 2 1 34 34 H 0.97001 * 119.99547 * 180.02562 * 8 7 5 35 35 H 1.09005 * 110.72271 * 324.79205 * 15 13 2 36 36 H 1.09001 * 110.71968 * 88.05789 * 15 13 2 37 37 H 1.08998 * 109.98674 * 263.05147 * 16 15 13 38 38 H 1.09002 * 109.77884 * 141.88670 * 16 15 13 39 39 H 1.09000 * 110.36904 * 32.00140 * 24 22 20 40 40 H 1.09000 * 110.37305 * 154.34302 * 24 22 20 41 41 H 1.09003 * 110.37408 * 200.45967 * 26 25 24 42 42 H 1.08999 * 110.37329 * 78.12844 * 26 25 24 43 43 H 1.08998 * 110.37077 * 94.94138 * 29 17 16 44 44 H 1.09005 * 110.36578 * 217.15160 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1491 -0.0074 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6123 -0.6617 3.5090 8 7 2.9254 -1.9387 3.4499 9 14 2.7913 0.2704 5.1179 10 1 1.4691 0.8072 5.5288 11 1 3.3001 -0.6480 6.1681 12 1 3.7465 1.3928 4.9361 13 6 2.0400 -0.7213 -1.2492 14 1 1.7474 -1.7712 -1.2391 15 6 3.5784 -0.5739 -1.3874 16 6 3.8020 -0.7165 -2.9076 17 7 2.5332 -0.3788 -3.5691 18 6 2.3103 -0.4003 -4.8981 19 8 1.2175 -0.1066 -5.3345 20 6 3.4188 -0.7895 -5.8419 21 1 4.1067 -1.5490 -5.4704 22 6 3.0997 -0.7990 -7.3383 23 1 2.0818 -0.6050 -7.6765 24 6 4.0309 -1.6002 -8.2749 25 8 5.0895 -0.6420 -8.6145 26 6 5.3776 0.0628 -7.3872 27 6 3.9969 0.3070 -6.7388 28 1 3.6566 1.3361 -6.6242 29 6 1.5434 -0.0189 -2.5375 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2491 -1.6317 1.1526 34 1 3.2487 -2.3959 4.2419 35 1 3.9052 0.4048 -1.0360 36 1 4.0920 -1.3697 -0.8480 37 1 4.0841 -1.7415 -3.1481 38 1 4.5834 -0.0290 -3.2315 39 1 4.4338 -2.4700 -7.7561 40 1 3.4934 -1.9077 -9.1720 41 1 5.8696 1.0117 -7.6010 42 1 6.0001 -0.5497 -6.7350 43 1 1.5193 1.0615 -2.3954 44 1 0.5555 -0.3864 -2.8151 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754797384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:19 Heat of formation + Delta-G solvation = -55.162177 kcal Electronic energy + Delta-G solvation = -23717.651268 eV Core-core repulsion = 20249.365907 eV Total energy + Delta-G solvation = -3468.285362 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80075 -40.49969 -38.95441 -36.80331 -35.49866 -34.24049 -31.96482 -30.83838 -29.67722 -29.06544 -27.28805 -26.08704 -24.60499 -22.84213 -22.67676 -21.62551 -21.07706 -20.19234 -19.16468 -18.53074 -17.54060 -17.22893 -16.66586 -16.46439 -16.06489 -15.86950 -15.66472 -15.38068 -14.86136 -14.65522 -14.28379 -14.08505 -13.92976 -13.71753 -13.60230 -13.43656 -13.20635 -12.90210 -12.81296 -12.74293 -12.57776 -12.32795 -12.22254 -11.95825 -11.68697 -11.56397 -11.46795 -11.40178 -11.32745 -10.98958 -10.89140 -10.68563 -9.73292 -8.97300 -7.90460 -5.17502 1.25453 1.49694 1.51197 1.57094 1.79475 2.47377 2.58782 2.97617 3.20161 3.42766 3.49197 3.54309 3.66090 3.71554 3.84558 3.86596 4.02672 4.09247 4.22182 4.30503 4.37075 4.40314 4.50729 4.60299 4.63469 4.68517 4.75595 4.76338 4.80905 4.88053 4.96145 4.97019 5.01940 5.05891 5.15819 5.21067 5.31930 5.38142 5.55248 5.59867 5.64838 6.31674 6.43026 7.00062 7.38820 8.14537 8.38233 9.32638 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.002804 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.762707 B = 9981.974848 C =10441.364439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.048 0.952 4 N -0.730 5.730 5 C -0.233 4.233 6 H 0.073 0.927 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.283 1.283 11 H -0.298 1.298 12 H -0.278 1.278 13 C -0.094 4.094 14 H 0.075 0.925 15 C -0.114 4.114 16 C 0.104 3.896 17 N -0.611 5.611 18 C 0.552 3.448 19 O -0.585 6.585 20 C -0.142 4.142 21 H 0.148 0.852 22 C -0.168 4.168 23 H 0.117 0.883 24 C 0.076 3.924 25 O -0.397 6.397 26 C 0.076 3.924 27 C -0.159 4.159 28 H 0.121 0.879 29 C 0.120 3.880 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 1.985 -21.762 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.066 0.934 4 N -0.370 5.370 5 C -0.365 4.365 6 H 0.091 0.909 7 C -0.265 4.265 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.209 1.209 11 H -0.225 1.225 12 H -0.204 1.204 13 C -0.113 4.113 14 H 0.093 0.907 15 C -0.152 4.152 16 C -0.017 4.017 17 N -0.343 5.343 18 C 0.342 3.658 19 O -0.466 6.466 20 C -0.163 4.163 21 H 0.166 0.834 22 C -0.187 4.187 23 H 0.135 0.865 24 C 0.001 3.999 25 O -0.316 6.316 26 C 0.000 4.000 27 C -0.178 4.178 28 H 0.139 0.861 29 C -0.003 4.003 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.988 2.325 -22.164 22.837 hybrid contribution -0.435 -0.004 1.688 1.743 sum 4.553 2.322 -20.476 21.104 Atomic orbital electron populations 1.22380 0.98348 1.00771 1.00558 1.20291 0.92257 0.94935 0.85097 0.93436 1.42506 1.78342 1.10273 1.05918 1.19516 1.34578 0.94056 0.88342 0.90925 1.25430 1.03242 0.96799 1.01055 1.69790 1.52753 1.10036 1.29309 0.85331 0.77771 0.77425 0.79952 1.20936 1.22456 1.20400 1.22443 0.96244 0.99741 0.92920 0.90654 1.22525 0.95137 1.03284 0.94259 1.22261 0.85261 1.02241 0.91977 1.48529 1.14490 1.66432 1.04817 1.19679 0.88327 0.76505 0.81297 1.90684 1.27283 1.51477 1.77113 1.22344 0.99312 1.03567 0.91087 0.83412 1.24174 1.01249 1.01492 0.91780 0.86501 1.23475 0.86484 0.91172 0.98797 1.89540 1.56811 1.53132 1.32142 1.23055 0.92843 0.98726 0.85375 1.24253 0.96807 0.95592 1.01157 0.86124 1.22173 0.92431 0.99667 0.86073 0.94001 0.94465 0.91612 0.79459 0.94183 0.90866 0.90334 0.89406 0.88984 0.89431 0.86858 0.86770 0.89845 0.90969 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 9.27 71.98 0.67 -4.86 16 2 C 0.18 6.64 2.42 44.99 0.11 6.75 16 3 H 0.05 1.75 8.02 -2.39 -0.02 1.73 16 4 N -0.73 -34.35 4.97 -322.95 -1.61 -35.95 16 5 C -0.23 -12.34 9.93 84.03 0.83 -11.50 16 6 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 7 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 8 N -0.97 -57.28 13.06 21.65 0.28 -57.00 16 9 Si 0.97 45.02 29.55 68.60 2.03 47.04 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 C -0.09 -2.74 2.65 -9.40 -0.02 -2.77 16 14 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.11 -2.94 6.28 31.78 0.20 -2.74 16 16 C 0.10 2.00 6.30 86.72 0.55 2.55 16 17 N -0.61 -14.71 3.33 -811.82 -2.70 -17.41 16 18 C 0.55 14.11 7.63 87.66 0.67 14.78 16 19 O -0.58 -19.66 16.60 -3.04 -0.05 -19.71 16 20 C -0.14 -2.49 5.08 -11.54 -0.06 -2.54 16 21 H 0.15 1.84 7.67 -2.39 -0.02 1.82 16 22 C -0.17 -2.90 6.59 -9.77 -0.06 -2.97 16 23 H 0.12 2.43 7.81 -2.39 -0.02 2.41 16 24 C 0.08 1.01 7.60 72.49 0.55 1.56 16 25 O -0.40 -6.71 11.72 -148.98 -1.75 -8.45 16 26 C 0.08 0.95 7.45 72.48 0.54 1.49 16 27 C -0.16 -2.51 6.91 -9.78 -0.07 -2.57 16 28 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 29 C 0.12 3.22 5.27 86.86 0.46 3.67 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.88 7.23 -2.38 -0.02 1.86 16 33 H 0.37 18.92 7.80 -92.71 -0.72 18.20 16 34 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.07 1.99 7.99 -2.38 -0.02 1.97 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.09 1.38 7.98 -2.39 -0.02 1.36 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 44 H 0.07 1.99 7.94 -2.38 -0.02 1.97 16 Total: -1.00 -67.60 357.47 1.29 -66.31 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.26 Total: 27.92 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 4.82 Total: -2.74 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -4.02 Total: -110.37 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.80 Total: -28.16 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -67.60 1.29 -66.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754797384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.143 kcal (2) G-P(sol) polarization free energy of solvation -67.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds