Wall clock time and date at job start Tue Mar 31 2020 07:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47377 * 2 1 4 4 N 1.46498 * 109.47206 * 239.99176 * 2 1 3 5 5 C 1.36931 * 119.99812 * 85.00695 * 4 2 1 6 6 H 1.08004 * 120.00238 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00138 * 179.72471 * 5 4 2 8 8 N 1.31612 * 119.99991 * 0.27063 * 7 5 4 9 9 Si 1.86800 * 119.99778 * 180.27423 * 7 5 4 10 10 H 1.48494 * 109.47420 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46908 * 120.00273 * 9 7 5 12 12 H 1.48507 * 109.46820 * 239.99712 * 9 7 5 13 13 C 1.53005 * 109.46664 * 119.99579 * 2 1 3 14 14 H 1.09006 * 110.88565 * 55.45666 * 13 2 1 15 15 C 1.55155 * 111.00325 * 291.53195 * 13 2 1 16 16 C 1.54326 * 102.93955 * 206.42467 * 15 13 2 17 17 N 1.47017 * 107.27349 * 22.19075 * 16 15 13 18 18 C 1.34778 * 125.64933 * 181.09302 * 17 16 15 19 19 O 1.21284 * 120.00032 * 179.97438 * 18 17 16 20 20 C 1.50694 * 119.99892 * 359.96173 * 18 17 16 21 21 H 1.09002 * 115.51365 * 34.41698 * 20 18 17 22 22 C 1.53004 * 117.43113 * 179.78386 * 20 18 17 23 23 H 1.08999 * 119.80801 * 355.37163 * 22 20 18 24 24 C 1.54486 * 118.06584 * 199.09855 * 22 20 18 25 25 O 1.46589 * 103.71089 * 272.60381 * 24 22 20 26 26 C 1.44421 * 105.42323 * 40.57236 * 25 24 22 27 27 C 1.52997 * 117.43579 * 249.04250 * 20 18 17 28 28 H 1.09000 * 119.80690 * 4.63621 * 27 20 18 29 29 C 1.47423 * 108.70311 * 1.06179 * 17 16 15 30 30 H 1.08999 * 109.46511 * 65.25360 * 1 2 3 31 31 H 1.08998 * 109.47219 * 185.25260 * 1 2 3 32 32 H 1.08994 * 109.47191 * 305.26254 * 1 2 3 33 33 H 0.97000 * 119.99993 * 265.00452 * 4 2 1 34 34 H 0.96998 * 120.00244 * 179.97438 * 8 7 5 35 35 H 1.08993 * 110.71951 * 324.78522 * 15 13 2 36 36 H 1.08999 * 110.72096 * 88.06444 * 15 13 2 37 37 H 1.09004 * 109.88073 * 262.77263 * 16 15 13 38 38 H 1.08999 * 110.01323 * 141.68469 * 16 15 13 39 39 H 1.09004 * 110.37063 * 32.01362 * 24 22 20 40 40 H 1.08995 * 110.36569 * 154.34216 * 24 22 20 41 41 H 1.09004 * 110.37169 * 200.52435 * 26 25 24 42 42 H 1.08995 * 110.37376 * 78.18492 * 26 25 24 43 43 H 1.08997 * 110.36852 * 217.03526 * 29 17 16 44 44 H 1.09003 * 110.37126 * 94.70538 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6908 -1.1960 5 6 2.1493 -0.0078 -2.3756 6 1 1.8921 1.0401 -2.4244 7 6 2.6175 -0.6608 -3.5076 8 7 2.9305 -1.9378 -3.4484 9 14 2.8033 0.2729 -5.1147 10 1 2.3871 1.6847 -4.9180 11 1 4.2222 0.2306 -5.5505 12 1 1.9475 -0.3548 -6.1536 13 6 2.0399 -0.7212 1.2494 14 1 1.6250 -1.7271 1.3140 15 6 1.7240 0.0950 2.5305 16 6 2.8268 -0.3588 3.5101 17 7 3.9375 -0.8853 2.7035 18 6 5.0846 -1.4010 3.1880 19 8 5.9359 -1.8081 2.4260 20 6 5.3096 -1.4714 4.6763 21 1 4.4203 -1.6620 5.2771 22 6 6.6303 -2.0723 5.1619 23 1 7.3297 -2.4969 4.4417 24 6 6.7098 -2.5676 6.6231 25 8 7.1010 -1.3714 7.3746 26 6 6.3437 -0.2878 6.7932 27 6 6.3791 -0.5535 5.2718 28 1 6.8887 0.1693 4.6346 29 6 3.5884 -0.7565 1.2770 30 1 -0.3632 0.4302 -0.9333 31 1 -0.3633 -1.0233 0.0941 32 1 -0.3633 0.5933 0.8391 33 1 2.2490 -1.6319 -1.1524 34 1 3.2572 -2.3943 -4.2394 35 1 1.7987 1.1646 2.3345 36 1 0.7369 -0.1595 2.9163 37 1 2.4418 -1.1400 4.1656 38 1 3.1693 0.4882 4.1046 39 1 5.7399 -2.9429 6.9498 40 1 7.4698 -3.3429 6.7200 41 1 6.8132 0.6689 7.0223 42 1 5.3166 -0.3043 7.1575 43 1 3.9582 -1.6153 0.7169 44 1 3.9962 0.1681 0.8685 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754797385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:22 Heat of formation + Delta-G solvation = -34.393091 kcal Electronic energy + Delta-G solvation = -23861.886239 eV Core-core repulsion = 20394.501493 eV Total energy + Delta-G solvation = -3467.384746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.89333 -39.47832 -37.71133 -35.21339 -34.69432 -32.48408 -30.57846 -29.05794 -28.81109 -28.28347 -26.33385 -24.01305 -23.59483 -21.92335 -21.40708 -20.88634 -19.67277 -19.15751 -17.70107 -17.00345 -16.35230 -16.08401 -15.84460 -15.42397 -14.97413 -14.78935 -14.23526 -13.84513 -13.67041 -13.44972 -13.13084 -13.01136 -12.73085 -12.60047 -12.23790 -12.10426 -11.96432 -11.85409 -11.68575 -11.34671 -10.91401 -10.79776 -10.69934 -10.64830 -10.58212 -10.50956 -10.21657 -10.04177 -9.92239 -9.75516 -9.62949 -8.92202 -8.53930 -6.96706 -5.75872 -3.05122 2.32830 2.89186 3.34545 3.43839 3.49124 3.51724 3.61270 4.08116 4.26243 4.47371 4.55441 4.56569 4.65273 4.71052 4.78016 4.94381 4.95806 4.99139 5.29631 5.31523 5.32218 5.36536 5.47598 5.54920 5.64069 5.67665 5.81842 5.86676 5.87062 5.90833 6.04409 6.14457 6.26436 6.30268 6.35222 6.37541 6.55191 6.61411 6.83002 7.05707 7.58242 7.70607 8.19440 8.41990 9.53489 10.10077 10.44421 11.46661 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.003189 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.905663 B = 8777.241460 C = 9518.499619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.124 4.124 16 C 0.101 3.899 17 N -0.613 5.613 18 C 0.553 3.447 19 O -0.534 6.534 20 C -0.143 4.143 21 H 0.122 0.878 22 C -0.161 4.161 23 H 0.135 0.865 24 C 0.074 3.926 25 O -0.376 6.376 26 C 0.076 3.924 27 C -0.167 4.167 28 H 0.128 0.872 29 C 0.120 3.880 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 2.789 22.621 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.163 4.163 16 C -0.022 4.022 17 N -0.347 5.347 18 C 0.341 3.659 19 O -0.411 6.411 20 C -0.164 4.164 21 H 0.140 0.860 22 C -0.180 4.180 23 H 0.153 0.847 24 C -0.002 4.002 25 O -0.295 6.295 26 C -0.001 4.001 27 C -0.186 4.186 28 H 0.146 0.854 29 C -0.001 4.001 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.504 2.682 22.275 22.487 hybrid contribution -0.149 0.131 -1.246 1.261 sum 1.355 2.813 21.030 21.260 Atomic orbital electron populations 1.22441 0.99070 1.00518 1.00382 1.20161 0.91922 0.95137 0.85347 0.93314 1.42429 1.78161 1.10741 1.05287 1.19237 1.36519 0.93878 0.87335 0.91175 1.24736 1.02080 0.95963 0.98073 1.69663 1.50671 1.08680 1.28855 0.86156 0.77338 0.78786 0.84133 1.20593 1.21887 1.21937 1.22688 0.94183 1.00103 0.95236 0.90136 1.22679 0.97672 1.00925 0.95005 1.22063 0.87446 0.98210 0.94475 1.48505 1.16605 1.60614 1.08971 1.19058 0.80840 0.77527 0.88480 1.90749 1.43179 1.47852 1.59270 1.22376 0.95061 1.04898 0.94099 0.86026 1.24142 0.99047 0.95904 0.98927 0.84703 1.23334 1.01240 0.88609 0.87054 1.89523 1.65477 1.16932 1.57608 1.22900 0.96647 0.91830 0.88717 1.24176 1.02162 0.94560 0.97716 0.85440 1.22281 0.94907 1.03264 0.79637 0.92558 0.93645 0.94441 0.78269 0.93547 0.90298 0.90028 0.91734 0.91539 0.91221 0.87916 0.88101 0.91742 0.89772 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.29 37.16 0.35 -2.39 16 2 C 0.18 3.39 2.42 -67.93 -0.16 3.23 16 3 H 0.05 0.92 8.01 -51.93 -0.42 0.50 16 4 N -0.72 -17.48 4.76 -53.42 -0.25 -17.73 16 5 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 9 Si 0.90 22.42 29.55 -169.99 -5.02 17.40 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 C -0.10 -1.54 2.62 -88.47 -0.23 -1.77 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -1.35 5.79 -24.90 -0.14 -1.49 16 16 C 0.10 1.03 6.31 -3.07 -0.02 1.01 16 17 N -0.61 -8.73 3.33 -170.52 -0.57 -9.30 16 18 C 0.55 8.37 7.63 -10.99 -0.08 8.29 16 19 O -0.53 -10.47 16.60 5.55 0.09 -10.37 16 20 C -0.14 -1.53 5.08 -91.77 -0.47 -2.00 16 21 H 0.12 1.02 7.67 -51.93 -0.40 0.62 16 22 C -0.16 -1.67 6.58 -89.14 -0.59 -2.26 16 23 H 0.14 1.60 7.81 -51.93 -0.41 1.19 16 24 C 0.07 0.62 7.59 37.94 0.29 0.91 16 25 O -0.38 -3.78 11.72 -35.23 -0.41 -4.20 16 26 C 0.08 0.60 7.45 37.93 0.28 0.89 16 27 C -0.17 -1.62 6.91 -89.15 -0.62 -2.23 16 28 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 29 C 0.12 2.06 6.03 -2.53 -0.02 2.04 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.50 7.75 -51.93 -0.40 0.10 16 33 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 34 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.08 0.83 7.98 -51.93 -0.41 0.42 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.55 7.98 -51.93 -0.41 0.13 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 1.72 8.04 -51.93 -0.42 1.30 16 44 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -32.95 358.07 -9.08 -42.03 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.38 Total: 7.06 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.66 Total: -2.86 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.10 Total: -54.45 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.32 Total: -14.57 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.95 -9.08 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754797385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.636 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds