Wall clock time and date at job start Tue Mar 31 2020 07:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47377 * 2 1 4 4 N 1.46498 * 109.47206 * 239.99176 * 2 1 3 5 5 C 1.36931 * 119.99812 * 85.00695 * 4 2 1 6 6 H 1.08004 * 120.00238 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00138 * 179.72471 * 5 4 2 8 8 N 1.31612 * 119.99991 * 0.27063 * 7 5 4 9 9 Si 1.86800 * 119.99778 * 180.27423 * 7 5 4 10 10 H 1.48494 * 109.47420 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46908 * 120.00273 * 9 7 5 12 12 H 1.48507 * 109.46820 * 239.99712 * 9 7 5 13 13 C 1.53005 * 109.46664 * 119.99579 * 2 1 3 14 14 H 1.09006 * 110.88565 * 55.45666 * 13 2 1 15 15 C 1.55155 * 111.00325 * 291.53195 * 13 2 1 16 16 C 1.54326 * 102.93955 * 206.42467 * 15 13 2 17 17 N 1.47017 * 107.27349 * 22.19075 * 16 15 13 18 18 C 1.34778 * 125.64933 * 181.09302 * 17 16 15 19 19 O 1.21284 * 120.00032 * 179.97438 * 18 17 16 20 20 C 1.50694 * 119.99892 * 359.96173 * 18 17 16 21 21 H 1.09002 * 115.51365 * 34.41698 * 20 18 17 22 22 C 1.53004 * 117.43113 * 179.78386 * 20 18 17 23 23 H 1.08999 * 119.80801 * 355.37163 * 22 20 18 24 24 C 1.54486 * 118.06584 * 199.09855 * 22 20 18 25 25 O 1.46589 * 103.71089 * 272.60381 * 24 22 20 26 26 C 1.44421 * 105.42323 * 40.57236 * 25 24 22 27 27 C 1.52997 * 117.43579 * 249.04250 * 20 18 17 28 28 H 1.09000 * 119.80690 * 4.63621 * 27 20 18 29 29 C 1.47423 * 108.70311 * 1.06179 * 17 16 15 30 30 H 1.08999 * 109.46511 * 65.25360 * 1 2 3 31 31 H 1.08998 * 109.47219 * 185.25260 * 1 2 3 32 32 H 1.08994 * 109.47191 * 305.26254 * 1 2 3 33 33 H 0.97000 * 119.99993 * 265.00452 * 4 2 1 34 34 H 0.96998 * 120.00244 * 179.97438 * 8 7 5 35 35 H 1.08993 * 110.71951 * 324.78522 * 15 13 2 36 36 H 1.08999 * 110.72096 * 88.06444 * 15 13 2 37 37 H 1.09004 * 109.88073 * 262.77263 * 16 15 13 38 38 H 1.08999 * 110.01323 * 141.68469 * 16 15 13 39 39 H 1.09004 * 110.37063 * 32.01362 * 24 22 20 40 40 H 1.08995 * 110.36569 * 154.34216 * 24 22 20 41 41 H 1.09004 * 110.37169 * 200.52435 * 26 25 24 42 42 H 1.08995 * 110.37376 * 78.18492 * 26 25 24 43 43 H 1.08997 * 110.36852 * 217.03526 * 29 17 16 44 44 H 1.09003 * 110.37126 * 94.70538 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6908 -1.1960 5 6 2.1493 -0.0078 -2.3756 6 1 1.8921 1.0401 -2.4244 7 6 2.6175 -0.6608 -3.5076 8 7 2.9305 -1.9378 -3.4484 9 14 2.8033 0.2729 -5.1147 10 1 2.3871 1.6847 -4.9180 11 1 4.2222 0.2306 -5.5505 12 1 1.9475 -0.3548 -6.1536 13 6 2.0399 -0.7212 1.2494 14 1 1.6250 -1.7271 1.3140 15 6 1.7240 0.0950 2.5305 16 6 2.8268 -0.3588 3.5101 17 7 3.9375 -0.8853 2.7035 18 6 5.0846 -1.4010 3.1880 19 8 5.9359 -1.8081 2.4260 20 6 5.3096 -1.4714 4.6763 21 1 4.4203 -1.6620 5.2771 22 6 6.6303 -2.0723 5.1619 23 1 7.3297 -2.4969 4.4417 24 6 6.7098 -2.5676 6.6231 25 8 7.1010 -1.3714 7.3746 26 6 6.3437 -0.2878 6.7932 27 6 6.3791 -0.5535 5.2718 28 1 6.8887 0.1693 4.6346 29 6 3.5884 -0.7565 1.2770 30 1 -0.3632 0.4302 -0.9333 31 1 -0.3633 -1.0233 0.0941 32 1 -0.3633 0.5933 0.8391 33 1 2.2490 -1.6319 -1.1524 34 1 3.2572 -2.3943 -4.2394 35 1 1.7987 1.1646 2.3345 36 1 0.7369 -0.1595 2.9163 37 1 2.4418 -1.1400 4.1656 38 1 3.1693 0.4882 4.1046 39 1 5.7399 -2.9429 6.9498 40 1 7.4698 -3.3429 6.7200 41 1 6.8132 0.6689 7.0223 42 1 5.3166 -0.3043 7.1575 43 1 3.9582 -1.6153 0.7169 44 1 3.9962 0.1681 0.8685 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754797385.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:21 Heat of formation + Delta-G solvation = -57.124219 kcal Electronic energy + Delta-G solvation = -23862.871935 eV Core-core repulsion = 20394.501493 eV Total energy + Delta-G solvation = -3468.370442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.81313 -40.49481 -38.96649 -36.80760 -35.51748 -34.28534 -32.06004 -30.03968 -29.88405 -29.66817 -27.24160 -25.89381 -24.67012 -22.91357 -22.61503 -21.63843 -21.08571 -20.20304 -19.20277 -18.49235 -17.44966 -17.21190 -16.67539 -16.54520 -16.06350 -15.87916 -15.63373 -15.44719 -15.13438 -14.55581 -14.28172 -14.22235 -13.77643 -13.61764 -13.58442 -13.37370 -13.10972 -12.90162 -12.82468 -12.72075 -12.57794 -12.35479 -12.15984 -12.06047 -11.71502 -11.54092 -11.47279 -11.39999 -11.33828 -11.00433 -10.93219 -10.68277 -9.72339 -8.99801 -7.93748 -5.21247 1.25020 1.44876 1.45941 1.55378 1.80697 2.46522 2.55414 2.97469 3.23132 3.40420 3.47863 3.53667 3.66963 3.73847 3.85276 3.86597 4.01016 4.08715 4.18848 4.33180 4.40375 4.43722 4.54963 4.61925 4.67731 4.72404 4.76227 4.80995 4.87324 4.88899 4.95416 4.99466 5.01451 5.10776 5.13256 5.24267 5.34308 5.41512 5.52959 5.65672 5.65945 6.28706 6.46985 7.02387 7.34298 8.12550 8.33041 9.30191 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.003189 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.905663 B = 8777.241460 C = 9518.499619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 H 0.046 0.954 4 N -0.739 5.739 5 C -0.229 4.229 6 H 0.077 0.923 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.299 1.299 12 H -0.295 1.295 13 C -0.093 4.093 14 H 0.077 0.923 15 C -0.112 4.112 16 C 0.096 3.904 17 N -0.612 5.612 18 C 0.542 3.458 19 O -0.595 6.595 20 C -0.133 4.133 21 H 0.158 0.842 22 C -0.176 4.176 23 H 0.108 0.892 24 C 0.080 3.920 25 O -0.396 6.396 26 C 0.080 3.920 27 C -0.159 4.159 28 H 0.114 0.886 29 C 0.124 3.876 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.369 0.631 34 H 0.248 0.752 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.035 0.965 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 4.525 26.074 26.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.379 5.379 5 C -0.361 4.361 6 H 0.095 0.905 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.187 1.187 11 H -0.227 1.227 12 H -0.222 1.222 13 C -0.113 4.113 14 H 0.095 0.905 15 C -0.150 4.150 16 C -0.025 4.025 17 N -0.344 5.344 18 C 0.332 3.668 19 O -0.477 6.477 20 C -0.154 4.154 21 H 0.176 0.824 22 C -0.195 4.195 23 H 0.126 0.874 24 C 0.005 3.995 25 O -0.315 6.315 26 C 0.004 3.996 27 C -0.178 4.178 28 H 0.132 0.868 29 C 0.001 3.999 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.200 0.800 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.109 0.891 43 H 0.053 0.947 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.577 4.483 25.796 26.189 hybrid contribution 0.492 -0.363 -2.285 2.366 sum -0.085 4.120 23.511 23.869 Atomic orbital electron populations 1.22267 0.96819 1.01097 1.01037 1.20452 0.93288 0.94723 0.84581 0.93569 1.42684 1.78476 1.10257 1.06490 1.19636 1.34034 0.94157 0.88308 0.90476 1.25528 1.03367 0.96859 1.01504 1.69828 1.52936 1.10357 1.29227 0.85146 0.76512 0.78418 0.80189 1.18705 1.22717 1.22189 1.22507 0.92034 1.00555 0.96164 0.90460 1.22724 0.99635 1.00543 0.92114 1.22424 0.85673 1.00184 0.94187 1.48611 1.17572 1.60126 1.08079 1.19963 0.80140 0.76366 0.90327 1.90717 1.45255 1.50477 1.61223 1.22306 0.96577 1.05689 0.90829 0.82421 1.24169 0.98527 0.96948 0.99829 0.87421 1.23419 1.02781 0.88321 0.85021 1.89510 1.66354 1.17827 1.57840 1.23065 0.98115 0.91858 0.86587 1.24243 1.00844 0.93740 0.99008 0.86776 1.21965 0.96573 0.99899 0.81426 0.94887 0.93818 0.89999 0.79964 0.94338 0.89444 0.86711 0.88686 0.88617 0.88906 0.87159 0.86745 0.89117 0.94669 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 9.29 71.98 0.67 -4.07 16 2 C 0.18 6.42 2.42 44.99 0.11 6.53 16 3 H 0.05 1.70 8.01 -2.39 -0.02 1.68 16 4 N -0.74 -36.69 4.76 -322.93 -1.54 -38.22 16 5 C -0.23 -12.69 9.93 84.04 0.83 -11.85 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 8 N -0.97 -61.35 13.06 21.65 0.28 -61.07 16 9 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 12 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 13 C -0.09 -2.70 2.62 -9.40 -0.02 -2.72 16 14 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 15 C -0.11 -1.95 5.79 31.78 0.18 -1.77 16 16 C 0.10 1.55 6.31 86.73 0.55 2.10 16 17 N -0.61 -16.97 3.33 -811.80 -2.70 -19.67 16 18 C 0.54 16.57 7.63 87.65 0.67 17.24 16 19 O -0.60 -25.06 16.60 -3.04 -0.05 -25.11 16 20 C -0.13 -2.59 5.08 -11.54 -0.06 -2.64 16 21 H 0.16 1.90 7.67 -2.39 -0.02 1.88 16 22 C -0.18 -3.52 6.58 -9.83 -0.06 -3.59 16 23 H 0.11 2.74 7.81 -2.39 -0.02 2.72 16 24 C 0.08 1.16 7.59 72.49 0.55 1.71 16 25 O -0.40 -6.87 11.72 -148.98 -1.75 -8.61 16 26 C 0.08 0.99 7.45 72.48 0.54 1.53 16 27 C -0.16 -2.80 6.91 -9.84 -0.07 -2.87 16 28 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 29 C 0.12 4.43 6.03 86.86 0.52 4.95 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.83 7.75 -2.39 -0.02 1.81 16 33 H 0.37 20.24 7.80 -92.71 -0.72 19.51 16 34 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.09 1.43 7.98 -2.39 -0.02 1.41 16 36 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.05 7.98 -2.38 -0.02 1.03 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.03 1.57 8.04 -2.39 -0.02 1.55 16 44 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 Total: -1.00 -77.95 358.07 1.41 -76.53 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.26 Total: 26.64 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 4.88 Total: 0.27 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -3.95 Total: -118.96 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.80 Total: -33.72 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -77.95 1.41 -76.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754797385.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.409 kcal (2) G-P(sol) polarization free energy of solvation -77.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds