Wall clock time and date at job start Tue Mar 31 2020 07:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46627 * 2 1 4 4 C 1.53001 * 109.46873 * 240.00523 * 2 1 3 5 5 C 1.53000 * 109.47210 * 62.32349 * 4 2 1 6 6 C 1.53002 * 109.47124 * 67.31185 * 5 4 2 7 7 C 1.53000 * 109.47124 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46917 * 299.99635 * 7 6 5 9 9 C 1.52999 * 109.47253 * 60.00098 * 8 7 6 10 10 C 1.52995 * 109.47064 * 187.30556 * 5 4 2 11 11 C 1.50696 * 109.47012 * 120.00241 * 2 1 3 12 12 O 1.20825 * 119.99564 * 121.25714 * 11 2 1 13 13 O 1.34229 * 120.00003 * 301.25092 * 11 2 1 14 14 C 1.45202 * 116.99839 * 185.09088 * 13 11 2 15 15 C 1.53000 * 109.47212 * 184.78800 * 14 13 11 16 16 C 1.50703 * 115.55050 * 65.69268 * 15 14 13 17 17 H 1.07997 * 119.99663 * 270.46120 * 16 15 14 18 18 C 1.37875 * 119.99583 * 90.46289 * 16 15 14 19 19 N 1.31515 * 119.99783 * 181.39466 * 18 16 15 20 20 Si 1.86798 * 120.00289 * 1.38575 * 18 16 15 21 21 H 1.48500 * 109.46878 * 92.89857 * 20 18 16 22 22 H 1.48504 * 109.47091 * 212.89945 * 20 18 16 23 23 H 1.48497 * 109.47360 * 332.89781 * 20 18 16 24 24 C 1.53005 * 117.49579 * 280.02394 * 15 14 13 25 25 C 1.52998 * 117.49972 * 211.36484 * 15 14 13 26 26 H 1.08999 * 109.46816 * 294.36623 * 1 2 3 27 27 H 1.09000 * 109.47076 * 54.36979 * 1 2 3 28 28 H 1.09001 * 109.46559 * 174.36806 * 1 2 3 29 29 H 1.08998 * 109.46834 * 302.31992 * 4 2 1 30 30 H 1.08999 * 109.46756 * 182.32285 * 4 2 1 31 31 H 1.08993 * 109.46981 * 307.31081 * 5 4 2 32 32 H 1.09000 * 109.47602 * 59.99486 * 6 5 4 33 33 H 1.09011 * 109.46934 * 299.99735 * 6 5 4 34 34 H 1.09005 * 109.46840 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47415 * 59.99840 * 7 6 5 36 36 H 1.09001 * 109.46956 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.46863 * 299.99935 * 8 7 6 38 38 H 1.08993 * 109.46994 * 59.99526 * 9 8 7 39 39 H 1.08994 * 109.47288 * 180.02562 * 9 8 7 40 40 H 1.09007 * 109.47635 * 300.00301 * 10 5 4 41 41 H 1.09003 * 109.47265 * 59.99741 * 10 5 4 42 42 H 1.09001 * 109.47019 * 304.78568 * 14 13 11 43 43 H 1.08996 * 109.47123 * 64.78691 * 14 13 11 44 44 H 0.97001 * 120.00342 * 180.02562 * 19 18 16 45 45 H 1.08999 * 117.50150 * 0.02562 * 24 15 14 46 46 H 1.09007 * 117.49597 * 145.01808 * 24 15 14 47 47 H 1.08994 * 117.50252 * 214.97595 * 25 15 14 48 48 H 1.09003 * 117.50025 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5783 0.0332 -2.4978 6 6 2.2795 1.3915 -2.5614 7 6 1.8183 2.1456 -3.8103 8 6 2.1702 1.3312 -5.0568 9 6 1.4690 -0.0272 -4.9932 10 6 1.9297 -0.7809 -3.7446 11 6 2.0323 -0.7104 1.2304 12 8 2.7456 -1.6794 1.1196 13 8 1.6875 -0.2667 2.4494 14 6 2.2978 -0.9284 3.5887 15 6 1.6989 -0.3726 4.8823 16 6 0.2365 -0.6649 5.0996 17 1 -0.5119 0.0187 4.7268 18 6 -0.1457 -1.8049 5.7743 19 7 -1.4224 -2.0740 5.9400 20 14 1.1495 -2.9673 6.4529 21 1 1.4485 -2.6069 7.8621 22 1 0.6421 -4.3617 6.3955 23 1 2.3877 -2.8573 5.6405 24 6 2.2345 0.9677 5.3900 25 6 2.6015 -0.3285 6.1169 26 1 -0.3633 0.4240 0.9361 27 1 -0.3633 0.5987 -0.8353 28 1 -0.3632 -1.0227 -0.1009 29 1 1.6430 -1.7361 -1.2704 30 1 3.1292 -0.7574 -1.2287 31 1 0.4996 0.1829 -2.4536 32 1 3.3583 1.2419 -2.6055 33 1 2.0292 1.9716 -1.6731 34 1 2.3176 3.1135 -3.8553 35 1 0.7395 2.2953 -3.7666 36 1 1.8420 1.8686 -5.9465 37 1 3.2490 1.1815 -5.1004 38 1 0.3903 0.1225 -4.9495 39 1 1.7200 -0.6076 -5.8810 40 1 3.0085 -0.9307 -3.7888 41 1 1.4302 -1.7487 -3.6993 42 1 2.1074 -2.0001 3.5314 43 1 3.3729 -0.7493 3.5798 44 1 -1.6914 -2.8758 6.4151 45 1 3.0132 1.4537 4.8022 46 1 1.5292 1.6379 5.8815 47 1 2.1377 -0.5104 7.0862 48 1 3.6219 -0.6958 6.0077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327424708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:45 Heat of formation + Delta-G solvation = -118.327081 kcal Electronic energy + Delta-G solvation = -24331.419977 eV Core-core repulsion = 20963.935923 eV Total energy + Delta-G solvation = -3367.484054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.198 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62683 -39.80783 -38.84302 -37.09210 -35.90603 -34.27154 -31.87444 -31.47484 -29.01004 -27.44831 -27.29301 -25.03230 -23.48597 -23.39292 -22.22526 -21.06174 -20.75425 -20.34603 -18.71859 -18.40257 -17.49822 -17.33497 -16.68562 -16.12787 -15.86756 -15.57329 -15.03793 -14.90570 -14.84734 -14.72225 -14.31190 -14.22235 -14.00842 -13.72747 -13.19784 -13.10606 -13.02678 -12.86569 -12.78914 -12.68798 -12.27342 -12.20110 -12.05831 -11.99253 -11.92306 -11.78455 -11.60825 -11.57635 -11.33811 -11.13307 -10.95621 -10.88635 -10.75503 -10.64626 -10.38273 -8.32827 -6.39962 1.21760 1.30067 1.35278 1.45701 1.75978 2.32485 3.00341 3.14936 3.60657 3.67371 3.79254 3.94326 3.98109 4.01201 4.10804 4.20578 4.24230 4.30770 4.35656 4.38063 4.49063 4.54376 4.62613 4.66410 4.67712 4.71805 4.78916 4.81270 4.87141 4.91658 4.94718 5.01021 5.12546 5.18726 5.19604 5.24029 5.27928 5.33408 5.38613 5.42872 5.43429 5.46409 5.54434 5.63864 5.64642 5.68913 6.27829 6.67742 6.80755 7.28895 8.82788 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.003177 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.907078 B = 8811.911905 C = 9004.791378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 H 0.130 0.870 4 C -0.092 4.092 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.117 4.117 10 C -0.115 4.115 11 C 0.451 3.549 12 O -0.549 6.549 13 O -0.346 6.346 14 C 0.113 3.887 15 C -0.038 4.038 16 C -0.482 4.482 17 H 0.035 0.965 18 C 0.020 3.980 19 N -0.946 5.946 20 Si 0.936 3.064 21 H -0.260 1.260 22 H -0.299 1.299 23 H -0.240 1.240 24 C -0.153 4.153 25 C -0.182 4.182 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.266 0.734 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.088 7.608 -19.966 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 H 0.147 0.853 4 C -0.130 4.130 5 C -0.099 4.099 6 C -0.156 4.156 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.155 4.155 10 C -0.152 4.152 11 C 0.296 3.704 12 O -0.441 6.441 13 O -0.261 6.261 14 C 0.039 3.961 15 C -0.039 4.039 16 C -0.519 4.519 17 H 0.053 0.947 18 C -0.178 4.178 19 N -0.585 5.585 20 Si 0.760 3.240 21 H -0.185 1.185 22 H -0.227 1.227 23 H -0.164 1.164 24 C -0.190 4.190 25 C -0.219 4.219 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.124 0.876 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.160 7.198 -19.872 23.035 hybrid contribution 0.035 -1.156 0.855 1.438 sum 9.195 6.042 -19.017 21.971 Atomic orbital electron populations 1.21816 0.91526 1.02848 1.03807 1.21226 0.98711 1.01454 0.87923 0.85267 1.21500 1.00966 0.98691 0.91822 1.21188 1.01057 0.95021 0.92653 1.21679 1.00105 0.95315 0.98544 1.21529 1.01452 0.98433 0.94157 1.21544 1.00366 0.95802 0.97986 1.21508 1.00456 0.96224 0.97280 1.21560 1.01142 0.98357 0.94179 1.24753 0.76894 0.82565 0.86192 1.90578 1.37582 1.27932 1.87967 1.86551 1.65184 1.59316 1.15086 1.22734 0.94939 0.95397 0.82988 1.19224 0.93510 1.00831 0.90316 1.20362 0.89627 1.06921 1.35038 0.94673 1.25848 0.97045 0.98998 0.95909 1.70031 1.17329 1.27607 1.43567 0.85943 0.80681 0.77145 0.80208 1.18497 1.22663 1.16355 1.22907 1.02560 0.90289 1.03199 1.23066 0.99565 1.03235 0.96033 0.92700 0.87934 0.93122 0.92491 0.91811 0.89932 0.92213 0.91441 0.91546 0.91714 0.91465 0.92301 0.91807 0.91657 0.92312 0.92303 0.94094 0.91184 0.92493 0.87582 0.89654 0.89734 0.87575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.71 71.98 0.63 -2.97 16 2 C -0.07 -1.93 2.70 -11.54 -0.03 -1.96 16 3 H 0.13 2.75 6.55 -2.38 -0.02 2.73 16 4 C -0.09 -2.09 3.48 30.59 0.11 -1.99 16 5 C -0.08 -1.35 2.04 -10.79 -0.02 -1.38 16 6 C -0.12 -1.77 5.00 30.60 0.15 -1.62 16 7 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 8 C -0.12 -1.45 5.92 30.59 0.18 -1.27 16 9 C -0.12 -1.52 5.92 30.58 0.18 -1.34 16 10 C -0.11 -1.80 5.20 30.58 0.16 -1.64 16 11 C 0.45 16.61 7.26 71.23 0.52 17.13 16 12 O -0.55 -22.81 15.62 21.97 0.34 -22.46 16 13 O -0.35 -14.57 9.92 -51.41 -0.51 -15.08 16 14 C 0.11 4.95 5.09 71.98 0.37 5.32 16 15 C -0.04 -1.75 1.07 -52.93 -0.06 -1.80 16 16 C -0.48 -27.65 9.40 25.60 0.24 -27.41 16 17 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 18 C 0.02 1.14 5.47 84.65 0.46 1.61 16 19 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 20 Si 0.94 44.77 24.73 68.60 1.70 46.47 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 23 H -0.24 -10.64 5.99 99.48 0.60 -10.05 16 24 C -0.15 -5.81 9.96 30.62 0.30 -5.50 16 25 C -0.18 -7.14 7.22 30.62 0.22 -6.92 16 26 H 0.05 1.64 7.95 -2.39 -0.02 1.62 16 27 H 0.10 1.85 6.62 -2.39 -0.02 1.84 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.53 8.02 -2.39 -0.02 1.52 16 31 H 0.08 1.31 6.27 -2.39 -0.01 1.30 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.98 6.60 -2.38 -0.02 0.96 16 34 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.04 1.96 7.34 -2.39 -0.02 1.94 16 43 H 0.07 2.67 8.09 -2.39 -0.02 2.65 16 44 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 45 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 46 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 47 H 0.08 3.48 6.72 -2.39 -0.02 3.46 16 48 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -68.91 369.30 6.21 -62.70 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.79 Total: 20.59 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 3.59 Total: -33.04 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.30 Total: -59.16 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.17 Total: -37.55 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.70 Total: 46.47 kcal Total: -68.91 6.21 -62.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327424708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.629 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds