Wall clock time and date at job start Tue Mar 31 2020 07:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 110.01712 * 2 1 4 4 C 1.53873 * 110.03351 * 121.38831 * 2 1 3 5 5 C 1.54270 * 106.59673 * 119.28602 * 4 2 1 6 6 C 1.54888 * 104.19438 * 336.39102 * 5 4 2 7 7 H 1.09008 * 110.75803 * 279.44268 * 6 5 4 8 8 C 1.50704 * 110.75706 * 156.25957 * 6 5 4 9 9 O 1.21288 * 119.99490 * 264.68627 * 8 6 5 10 10 N 1.34774 * 120.00038 * 84.68256 * 8 6 5 11 11 C 1.46926 * 120.62730 * 174.88423 * 10 8 6 12 12 C 1.53198 * 108.77323 * 233.62843 * 11 10 8 13 13 C 1.53039 * 109.31028 * 305.36452 * 12 11 10 14 14 C 1.53043 * 109.53758 * 61.36483 * 13 12 11 15 15 H 1.09000 * 109.52364 * 58.60106 * 14 13 12 16 16 N 1.46500 * 109.49571 * 178.68162 * 14 13 12 17 17 C 1.36938 * 119.99857 * 274.83646 * 16 14 13 18 18 H 1.07999 * 120.00313 * 0.02562 * 17 16 14 19 19 C 1.38811 * 119.99725 * 179.72447 * 17 16 14 20 20 N 1.31622 * 120.00261 * 180.27496 * 19 17 16 21 21 Si 1.86804 * 120.00092 * 0.27695 * 19 17 16 22 22 H 1.48504 * 109.46785 * 89.99964 * 21 19 17 23 23 H 1.48495 * 109.47217 * 209.99595 * 21 19 17 24 24 H 1.48490 * 109.47189 * 330.00117 * 21 19 17 25 25 C 1.46921 * 120.63096 * 354.90236 * 10 8 6 26 26 C 1.54262 * 110.03339 * 238.55958 * 2 1 3 27 27 H 1.09005 * 109.47288 * 300.06085 * 1 2 3 28 28 H 1.08998 * 109.47399 * 60.06185 * 1 2 3 29 29 H 1.09005 * 109.47361 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47527 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47176 * 299.93941 * 3 2 1 32 32 H 1.09000 * 109.47175 * 59.93664 * 3 2 1 33 33 H 1.09004 * 110.03622 * 0.02562 * 4 2 1 34 34 H 1.08997 * 110.03698 * 238.56734 * 4 2 1 35 35 H 1.09003 * 110.48765 * 217.71666 * 5 4 2 36 36 H 1.09001 * 110.60007 * 95.12077 * 5 4 2 37 37 H 1.09001 * 109.58912 * 353.41307 * 11 10 8 38 38 H 1.08998 * 109.59000 * 113.84499 * 11 10 8 39 39 H 1.09002 * 109.49567 * 65.31296 * 12 11 10 40 40 H 1.08998 * 109.49534 * 185.41130 * 12 11 10 41 41 H 1.09000 * 109.46202 * 301.34316 * 13 12 11 42 42 H 1.09003 * 109.45750 * 181.38497 * 13 12 11 43 43 H 0.96994 * 120.00117 * 94.84276 * 16 14 13 44 44 H 0.96996 * 120.00718 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.58971 * 6.57958 * 25 10 8 46 46 H 1.09008 * 109.58784 * 246.15504 * 25 10 8 47 47 H 1.09000 * 110.48964 * 145.64596 * 26 2 1 48 48 H 1.09003 * 110.48725 * 22.99826 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0571 -0.7529 1.2341 5 6 2.8875 -1.9403 0.7044 6 6 2.3281 -2.1904 -0.7181 7 1 1.4048 -2.7682 -0.6741 8 6 3.3504 -2.8862 -1.5794 9 8 4.0702 -2.2381 -2.3095 10 7 3.4649 -4.2284 -1.5383 11 6 4.3772 -4.9302 -2.4515 12 6 3.5922 -6.0153 -3.1953 13 6 2.8982 -6.9246 -2.1785 14 6 1.9135 -6.1018 -1.3445 15 1 1.1809 -5.6342 -2.0022 16 7 1.2269 -6.9789 -0.3928 17 6 0.1109 -7.6707 -0.7816 18 1 -0.2629 -7.5701 -1.7899 19 6 -0.5363 -8.5061 0.1184 20 7 -1.6058 -9.1753 -0.2568 21 14 0.1105 -8.6806 1.8622 22 1 -0.5284 -7.6602 2.7315 23 1 -0.2082 -10.0373 2.3749 24 1 1.5822 -8.4829 1.8663 25 6 2.6795 -5.0177 -0.5798 26 6 2.0584 -0.7560 -1.2365 27 1 -0.3634 0.5148 0.8895 28 1 -0.3634 0.5129 -0.8905 29 1 -0.3634 -1.0277 0.0005 30 1 3.1436 1.4273 0.0005 31 1 1.6962 1.9546 -0.8905 32 1 1.6944 1.9552 0.8894 33 1 1.2229 -1.1188 1.8328 34 1 2.6867 -0.0945 1.8325 35 1 2.7401 -2.8191 1.3322 36 1 3.9446 -1.6786 0.6579 37 1 4.7918 -4.2223 -3.1693 38 1 5.1841 -5.3895 -1.8805 39 1 2.8441 -5.5485 -3.8360 40 1 4.2761 -6.6061 -3.8045 41 1 3.6448 -7.3718 -1.5223 42 1 2.3589 -7.7123 -2.7046 43 1 1.5627 -7.0694 0.5126 44 1 -2.0579 -9.7593 0.3720 45 1 1.9739 -4.3677 -0.0625 46 1 3.3479 -5.4842 0.1439 47 1 2.9811 -0.3007 -1.5965 48 1 1.3061 -0.7705 -2.0251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000125708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:15 Heat of formation + Delta-G solvation = -64.547109 kcal Electronic energy + Delta-G solvation = -25085.188470 eV Core-core repulsion = 21752.329242 eV Total energy + Delta-G solvation = -3332.859228 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.62276 -39.67401 -38.52688 -36.13877 -34.14630 -33.58355 -32.66295 -30.46631 -29.88065 -28.12682 -26.91642 -25.51310 -25.41725 -23.44995 -22.49648 -21.25783 -20.18035 -19.66249 -19.39553 -18.37868 -17.02975 -16.79890 -16.37937 -16.00688 -15.59797 -15.45189 -15.21088 -14.92258 -14.65653 -14.63270 -14.49980 -14.18617 -14.06438 -13.96021 -13.78237 -13.10562 -12.96564 -12.90501 -12.59645 -12.52203 -12.39652 -12.18715 -12.06911 -11.94750 -11.81978 -11.78210 -11.68190 -11.60310 -11.43346 -11.38990 -11.29615 -10.97500 -10.68966 -9.71082 -9.29926 -7.99977 -5.35220 1.41526 1.45435 1.52553 1.55097 1.95676 2.51434 3.28789 3.31792 3.53647 3.60448 3.74905 3.86378 3.97302 4.05946 4.06330 4.25174 4.29577 4.30831 4.34783 4.36192 4.50716 4.55613 4.61572 4.64538 4.70478 4.80649 4.84123 4.87758 4.89560 4.99408 5.00117 5.03483 5.06390 5.11861 5.15785 5.22700 5.30886 5.34797 5.40881 5.46248 5.47513 5.53224 5.59456 5.78606 6.22545 6.35752 7.08684 7.12590 7.82085 8.03323 9.21468 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.004678 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.493214 B = 5983.979558 C = 7256.700719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.136 4.136 4 C -0.111 4.111 5 C -0.106 4.106 6 C -0.118 4.118 7 H 0.101 0.899 8 C 0.523 3.477 9 O -0.579 6.579 10 N -0.604 5.604 11 C 0.111 3.889 12 C -0.122 4.122 13 C -0.131 4.131 14 C 0.167 3.833 15 H 0.038 0.962 16 N -0.745 5.745 17 C -0.229 4.229 18 H 0.052 0.948 19 C -0.062 4.062 20 N -0.985 5.985 21 Si 0.955 3.045 22 H -0.275 1.275 23 H -0.301 1.301 24 H -0.246 1.246 25 C 0.108 3.892 26 C -0.095 4.095 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.042 0.958 43 H 0.369 0.631 44 H 0.257 0.743 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.533 17.976 2.978 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.193 4.193 4 C -0.149 4.149 5 C -0.144 4.144 6 C -0.139 4.139 7 H 0.119 0.881 8 C 0.313 3.687 9 O -0.460 6.460 10 N -0.336 5.336 11 C -0.010 4.010 12 C -0.160 4.160 13 C -0.171 4.171 14 C 0.058 3.942 15 H 0.056 0.944 16 N -0.388 5.388 17 C -0.360 4.360 18 H 0.070 0.930 19 C -0.253 4.253 20 N -0.636 5.636 21 Si 0.782 3.218 22 H -0.201 1.201 23 H -0.228 1.228 24 H -0.170 1.170 25 C -0.015 4.015 26 C -0.133 4.133 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.203 0.797 44 H 0.066 0.934 45 H 0.117 0.883 46 H 0.103 0.897 47 H 0.086 0.914 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.746 18.251 2.461 21.843 hybrid contribution -0.288 -0.923 0.518 1.097 sum 11.458 17.328 2.979 20.986 Atomic orbital electron populations 1.21931 0.93848 1.01732 1.02167 1.21170 0.95856 0.95739 0.94041 1.21882 1.00676 0.94586 1.02160 1.22284 0.99642 0.96024 0.96907 1.22313 0.99721 0.99780 0.92554 1.22374 0.97563 0.97547 0.96433 0.88063 1.20931 0.83886 0.81619 0.82250 1.90623 1.46791 1.65344 1.43205 1.48133 1.42603 1.05808 1.37062 1.21682 0.91951 0.94445 0.92970 1.21839 0.99641 0.96802 0.97749 1.22088 0.98569 0.98342 0.98085 1.20622 0.92538 0.90001 0.91063 0.94387 1.42573 1.31175 1.53481 1.11620 1.18921 1.01691 1.18328 0.97051 0.93004 1.25500 0.97864 0.99231 1.02698 1.69891 1.23078 1.33844 1.36763 0.85418 0.79487 0.76760 0.80158 1.20080 1.22836 1.17044 1.22031 0.94934 0.93535 0.91035 1.22365 1.01103 0.92341 0.97493 0.91572 0.92641 0.93116 0.92856 0.92712 0.91504 0.90639 0.90318 0.90050 0.91704 0.89791 0.89919 0.92927 0.88895 0.91544 0.93956 0.79747 0.93384 0.88327 0.89694 0.91381 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.14 71.98 0.59 -1.74 16 2 C -0.07 -1.18 0.94 -51.46 -0.05 -1.23 16 3 C -0.14 -2.06 8.16 71.98 0.59 -1.47 16 4 C -0.11 -1.80 6.11 31.32 0.19 -1.61 16 5 C -0.11 -2.00 6.09 31.67 0.19 -1.81 16 6 C -0.12 -2.73 2.24 -10.25 -0.02 -2.75 16 7 H 0.10 2.37 6.77 -2.38 -0.02 2.35 16 8 C 0.52 14.76 6.92 87.66 0.61 15.37 16 9 O -0.58 -19.67 15.17 -3.05 -0.05 -19.72 16 10 N -0.60 -16.04 2.97 -818.90 -2.43 -18.47 16 11 C 0.11 2.74 6.42 86.36 0.55 3.29 16 12 C -0.12 -3.11 6.08 30.67 0.19 -2.92 16 13 C -0.13 -4.15 5.47 30.62 0.17 -3.98 16 14 C 0.17 5.80 2.92 45.07 0.13 5.93 16 15 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 16 N -0.74 -31.86 4.93 -322.57 -1.59 -33.45 16 17 C -0.23 -12.46 10.41 84.03 0.88 -11.59 16 18 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 19 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 20 N -0.99 -61.83 13.97 21.65 0.30 -61.53 16 21 Si 0.95 43.02 27.74 68.60 1.90 44.92 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.25 -9.72 6.51 99.48 0.65 -9.08 16 25 C 0.11 2.89 5.74 86.36 0.50 3.39 16 26 C -0.10 -2.10 5.15 31.67 0.16 -1.94 16 27 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.16 7.67 -2.38 -0.02 1.14 16 34 H 0.08 1.11 7.67 -2.39 -0.02 1.09 16 35 H 0.08 1.41 7.65 -2.39 -0.02 1.39 16 36 H 0.06 1.30 8.04 -2.39 -0.02 1.28 16 37 H 0.08 2.17 7.04 -2.39 -0.02 2.16 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.37 14.72 5.66 -92.71 -0.52 14.20 16 44 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 45 H 0.10 2.46 5.04 -2.39 -0.01 2.45 16 46 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.07 1.72 6.96 -2.39 -0.02 1.70 16 48 H 0.06 1.41 7.84 -2.39 -0.02 1.40 16 Total: -1.00 -67.39 364.28 3.61 -63.78 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.34 Total: 30.56 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 5.13 Total: -6.09 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -3.72 Total: -113.45 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.05 Total: -19.72 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.90 Total: 44.92 kcal Total: -67.39 3.61 -63.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000125708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.763 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds