Wall clock time and date at job start Tue Mar 31 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46991 * 2 1 4 4 C 1.52999 * 115.55213 * 325.67275 * 3 2 1 5 5 C 1.53003 * 117.49578 * 111.38376 * 3 2 1 6 6 C 1.52996 * 60.00099 * 107.48740 * 5 3 2 7 7 H 1.08997 * 117.51933 * 252.51233 * 6 5 3 8 8 C 1.50707 * 117.49882 * 107.48822 * 6 5 3 9 9 O 1.21276 * 119.99680 * 291.37751 * 8 6 5 10 10 N 1.34780 * 119.99740 * 111.37502 * 8 6 5 11 11 C 1.46496 * 119.99688 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.46445 * 299.97497 * 11 10 8 13 13 C 1.53038 * 109.46010 * 180.02562 * 11 10 8 14 14 C 1.53186 * 109.31572 * 301.36268 * 13 11 10 15 15 N 1.46930 * 108.77387 * 305.36553 * 14 13 11 16 16 C 1.36939 * 120.62706 * 233.58343 * 15 14 13 17 17 H 1.08008 * 119.99778 * 152.32467 * 16 15 14 18 18 C 1.38804 * 120.00453 * 332.05007 * 16 15 14 19 19 N 1.31620 * 120.00038 * 343.04343 * 18 16 15 20 20 Si 1.86801 * 120.00150 * 163.04087 * 18 16 15 21 21 H 1.48491 * 109.47171 * 60.00079 * 20 18 16 22 22 H 1.48504 * 109.46780 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47267 * 299.99706 * 20 18 16 24 24 C 1.46923 * 118.74105 * 53.85762 * 15 14 13 25 25 C 1.53043 * 109.44857 * 59.94148 * 11 10 8 26 26 H 1.08995 * 109.47872 * 59.99909 * 1 2 3 27 27 H 1.09004 * 109.46999 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47036 * 299.99459 * 1 2 3 29 29 H 1.09008 * 109.46829 * 240.00200 * 2 1 3 30 30 H 1.09001 * 109.47107 * 120.00480 * 2 1 3 31 31 H 1.08995 * 109.46886 * 274.32837 * 4 3 2 32 32 H 1.08997 * 109.47017 * 34.33045 * 4 3 2 33 33 H 1.09003 * 109.46771 * 154.33046 * 4 3 2 34 34 H 1.08994 * 117.49927 * 359.97438 * 5 3 2 35 35 H 1.09008 * 117.49452 * 214.97892 * 5 3 2 36 36 H 0.96994 * 119.99939 * 0.02562 * 10 8 6 37 37 H 1.08998 * 109.46997 * 300.02827 * 12 11 10 38 38 H 1.08998 * 109.46989 * 60.02339 * 12 11 10 39 39 H 1.08996 * 109.47149 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.50150 * 181.40440 * 13 11 10 41 41 H 1.09004 * 109.52450 * 61.32831 * 13 11 10 42 42 H 1.08996 * 109.58919 * 185.57576 * 14 13 11 43 43 H 1.09000 * 109.58687 * 65.14593 * 14 13 11 44 44 H 0.96999 * 120.00551 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.58490 * 65.92491 * 24 15 14 46 46 H 1.09001 * 109.58884 * 186.35424 * 24 15 14 47 47 H 1.09005 * 109.49625 * 178.59659 * 25 11 10 48 48 H 1.08993 * 109.49817 * 298.69616 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1851 2.4446 -0.7784 5 6 2.7419 1.9435 1.2638 6 6 3.5549 1.6561 0.0000 7 1 4.1884 0.7691 -0.0005 8 6 4.0910 2.8379 -0.7663 9 8 3.3286 3.5768 -1.3526 10 7 5.4176 3.0737 -0.8000 11 6 5.9387 4.2221 -1.5454 12 6 5.5490 4.0927 -3.0193 13 6 7.4637 4.2599 -1.4232 14 6 7.8513 4.3543 0.0558 15 7 7.1694 5.5121 0.6503 16 6 7.8800 6.4713 1.3214 17 1 7.5108 7.4854 1.3646 18 6 9.0717 6.1392 1.9508 19 7 9.3570 4.8780 2.1963 20 14 10.2705 7.4821 2.4495 21 1 9.6078 8.4085 3.4021 22 1 11.4577 6.8698 3.0984 23 1 10.6996 8.2354 1.2437 24 6 5.7102 5.6181 0.5164 25 6 5.3468 5.5122 -0.9731 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.4776 2.4332 -1.8283 32 1 0.1338 2.1704 -0.6910 33 1 1.3351 3.4442 -0.3703 34 1 2.8400 1.2457 2.0952 35 1 2.5947 2.9875 1.5410 36 1 6.0272 2.4825 -0.3314 37 1 5.9695 3.1733 -3.4269 38 1 4.4629 4.0655 -3.1070 39 1 5.9371 4.9469 -3.5741 40 1 7.8501 5.1282 -1.9568 41 1 7.8862 3.3514 -1.8526 42 1 8.9303 4.4811 0.1434 43 1 7.5449 3.4449 0.5727 44 1 10.1896 4.6458 2.6365 45 1 5.2328 4.8095 1.0700 46 1 5.3760 6.5789 0.9080 47 1 5.7531 6.3689 -1.5109 48 1 4.2624 5.4946 -1.0820 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045605021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:14 Heat of formation + Delta-G solvation = -0.521335 kcal Electronic energy + Delta-G solvation = -25446.748177 eV Core-core repulsion = 22116.665314 eV Total energy + Delta-G solvation = -3330.082862 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.37381 -38.54035 -36.61420 -34.32299 -32.46385 -31.77072 -30.71302 -29.86288 -27.97316 -27.38160 -24.56966 -24.01318 -23.71181 -22.26073 -21.01863 -20.04900 -18.83480 -18.50496 -16.95942 -16.70582 -15.32150 -14.89051 -14.81778 -14.70237 -14.41287 -14.02665 -13.76147 -13.43525 -13.22505 -13.06107 -12.90874 -12.65882 -12.35651 -12.26778 -12.20040 -11.89855 -11.61585 -11.53902 -11.27555 -11.21654 -11.13404 -10.90396 -10.88493 -10.69695 -10.36952 -10.27189 -10.03834 -9.85247 -9.78623 -9.61117 -9.53918 -8.87237 -8.53860 -8.42923 -6.64628 -5.78999 -3.20324 2.84570 3.38411 3.43826 3.45653 3.47798 3.90232 4.50352 4.63908 4.68015 4.86270 4.97790 5.17161 5.19400 5.34214 5.34843 5.40521 5.50147 5.54422 5.58947 5.65561 5.77185 5.78068 5.83456 5.95434 5.99641 6.04260 6.09227 6.11114 6.16442 6.22833 6.23381 6.35111 6.36024 6.44800 6.55716 6.63039 6.73490 6.74871 6.86661 7.00417 7.15733 7.31540 7.59807 7.79377 8.02322 8.45636 8.68185 9.22143 9.85760 10.43068 11.29411 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.003929 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.311533 B = 7125.505791 C = 7591.818521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.092 4.092 4 C -0.105 4.105 5 C -0.145 4.145 6 C -0.187 4.187 7 H 0.116 0.884 8 C 0.545 3.455 9 O -0.539 6.539 10 N -0.707 5.707 11 C 0.185 3.815 12 C -0.159 4.159 13 C -0.146 4.146 14 C 0.173 3.827 15 N -0.591 5.591 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.905 5.905 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.151 3.849 25 C -0.142 4.142 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.399 0.601 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.015 0.985 44 H 0.253 0.747 45 H 0.015 0.985 46 H 0.049 0.951 47 H 0.061 0.939 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.474 -9.645 -6.218 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.162 4.162 5 C -0.182 4.182 6 C -0.208 4.208 7 H 0.134 0.866 8 C 0.331 3.669 9 O -0.418 6.418 10 N -0.357 5.357 11 C 0.099 3.901 12 C -0.218 4.218 13 C -0.186 4.186 14 C 0.047 3.953 15 N -0.314 5.314 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.549 5.549 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.025 3.975 25 C -0.182 4.182 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.234 0.766 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.840 -9.153 -6.545 17.072 hybrid contribution 1.311 0.271 0.615 1.473 sum -11.528 -8.882 -5.930 15.715 Atomic orbital electron populations 1.21822 0.95426 1.01227 1.02291 1.21085 0.96118 0.93363 1.01890 1.21555 0.91047 0.96689 0.99975 1.21432 0.96979 0.97440 1.00354 1.23171 1.01576 1.02898 0.90582 1.22382 0.95638 0.99539 1.03271 0.86571 1.19484 0.82296 0.84861 0.80212 1.90598 1.56926 1.48753 1.45510 1.46126 1.06873 1.29822 1.52882 1.20240 0.94191 0.85560 0.90061 1.22218 1.03119 1.00877 0.95540 1.22520 0.92645 1.01046 1.02348 1.20728 0.99300 0.88945 0.86326 1.44044 1.00220 1.25117 1.61970 1.19170 1.03407 0.89281 1.26166 0.91810 1.25016 1.00490 0.96002 0.98150 1.70007 1.24631 1.15720 1.44586 0.86374 0.80771 0.81395 0.78265 1.20937 1.21674 1.21078 1.20918 0.85942 0.98330 0.92305 1.22464 1.00842 0.95767 0.99086 0.92011 0.92991 0.92531 0.91666 0.91794 0.91612 0.92991 0.91679 0.88202 0.88224 0.76607 0.93508 0.90889 0.92422 0.91148 0.92872 0.89343 0.96654 0.93668 0.96674 0.93283 0.92040 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.92 37.16 0.33 -0.89 16 2 C -0.09 -0.80 6.12 -26.73 -0.16 -0.96 16 3 C -0.09 -1.05 2.47 -154.51 -0.38 -1.43 16 4 C -0.11 -1.31 7.73 37.16 0.29 -1.02 16 5 C -0.14 -1.73 9.53 -26.73 -0.25 -1.99 16 6 C -0.19 -2.38 5.91 -91.77 -0.54 -2.92 16 7 H 0.12 1.29 8.14 -51.93 -0.42 0.86 16 8 C 0.55 8.48 7.01 -10.98 -0.08 8.40 16 9 O -0.54 -9.39 9.32 5.56 0.05 -9.33 16 10 N -0.71 -11.26 4.09 -47.57 -0.19 -11.45 16 11 C 0.18 3.16 0.66 -131.78 -0.09 3.08 16 12 C -0.16 -2.47 8.40 37.16 0.31 -2.15 16 13 C -0.15 -2.68 4.96 -26.62 -0.13 -2.81 16 14 C 0.17 3.94 5.03 -3.71 -0.02 3.92 16 15 N -0.59 -14.65 2.99 -172.03 -0.51 -15.17 16 16 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 17 H 0.06 1.74 7.89 -52.48 -0.41 1.32 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 19 N -0.90 -25.77 11.18 55.49 0.62 -25.15 16 20 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 C 0.15 3.31 6.28 -3.46 -0.02 3.29 16 25 C -0.14 -2.69 4.69 -26.36 -0.12 -2.82 16 26 H 0.06 0.51 6.45 -51.93 -0.33 0.17 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 31 H 0.06 0.90 7.26 -51.93 -0.38 0.53 16 32 H 0.05 0.54 5.58 -51.93 -0.29 0.25 16 33 H 0.06 0.93 7.01 -51.93 -0.36 0.56 16 34 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 35 H 0.10 1.33 8.05 -51.92 -0.42 0.91 16 36 H 0.40 6.11 7.27 -40.82 -0.30 5.81 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.21 6.17 -51.93 -0.32 0.89 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.09 2.29 6.04 -51.93 -0.31 1.97 16 43 H 0.02 0.36 6.94 -51.93 -0.36 0.00 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.02 0.34 7.73 -51.93 -0.40 -0.06 16 46 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.07 1.39 6.20 -51.93 -0.32 1.07 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -29.29 358.76 -9.15 -38.44 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.39 Total: 6.00 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.10 Total: -5.36 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.09 Total: -51.77 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.05 Total: -9.33 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.29 -9.15 -38.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045605021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.923 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds