Wall clock time and date at job start Tue Mar 31 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34709 * 117.00165 * 2 1 4 4 O 1.21479 * 119.99545 * 0.02562 * 3 2 1 5 5 C 1.47743 * 120.00330 * 179.97438 * 3 2 1 6 6 C 1.39664 * 120.11186 * 359.97438 * 5 3 2 7 7 C 1.37971 * 119.98538 * 179.97438 * 6 5 3 8 8 C 1.38257 * 120.22781 * 0.06835 * 7 6 5 9 9 C 1.38952 * 120.23744 * 359.95170 * 8 7 6 10 10 N 1.39952 * 119.99919 * 180.02562 * 9 8 7 11 11 C 1.34781 * 120.00347 * 144.88734 * 10 9 8 12 12 O 1.21290 * 119.99640 * 4.62132 * 11 10 9 13 13 C 1.50696 * 120.00304 * 184.62546 * 11 10 9 14 14 S 1.80999 * 109.47133 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99748 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00455 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99543 * 179.97438 * 15 14 13 18 18 N 1.31637 * 119.99719 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00408 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47136 * 89.99702 * 19 17 15 21 21 H 1.48496 * 109.47063 * 209.99657 * 19 17 15 22 22 H 1.48493 * 109.46766 * 329.99887 * 19 17 15 23 23 C 1.38617 * 120.00615 * 0.02562 * 9 8 7 24 24 H 1.09003 * 109.47392 * 60.00144 * 1 2 3 25 25 H 1.09001 * 109.47362 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47170 * 299.99837 * 1 2 3 27 27 H 1.07997 * 120.00732 * 0.04389 * 6 5 3 28 28 H 1.08004 * 119.88200 * 180.02562 * 7 6 5 29 29 H 1.08002 * 119.87993 * 179.97438 * 8 7 6 30 30 H 0.97007 * 119.99959 * 324.89550 * 10 9 8 31 31 H 1.09002 * 109.46572 * 300.00086 * 13 11 10 32 32 H 1.09001 * 109.47362 * 59.99657 * 13 11 10 33 33 H 0.96999 * 119.99991 * 179.97438 * 18 17 15 34 34 H 1.08005 * 120.11523 * 179.74720 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3020 0.1078 0.0017 7 6 5.6796 0.1831 0.0017 8 6 6.3094 1.4139 0.0020 9 6 5.5595 2.5837 0.0014 10 7 6.2022 3.8269 0.0012 11 6 5.6638 4.8638 -0.6707 12 8 4.5816 4.7439 -1.2050 13 6 6.4065 6.1722 -0.7582 14 16 5.4307 7.3568 -1.7177 15 6 6.5032 8.7537 -1.6608 16 1 7.4440 8.6911 -1.1343 17 6 6.1388 9.9345 -2.2927 18 7 6.9398 10.9782 -2.2498 19 14 4.5111 10.0431 -3.2029 20 1 3.4524 10.5064 -2.2703 21 1 4.6359 11.0051 -4.3273 22 1 4.1511 8.7042 -3.7346 23 6 4.1748 2.5194 0.0009 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.8137 -0.8555 0.0014 28 1 6.2680 -0.7226 0.0021 29 1 7.3882 1.4663 0.0024 30 1 7.0353 3.9423 0.4846 31 1 6.5698 6.5649 0.2454 32 1 7.3677 6.0125 -1.2467 33 1 6.6853 11.8034 -2.6918 34 1 3.5902 3.4275 0.0045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031545139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:36 Heat of formation + Delta-G solvation = -89.556815 kcal Electronic energy + Delta-G solvation = -20103.989730 eV Core-core repulsion = 16707.580925 eV Total energy + Delta-G solvation = -3396.408805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88746 -40.13077 -38.33273 -36.56370 -34.81022 -32.47478 -31.57843 -30.87880 -28.65264 -27.86999 -25.65689 -24.37765 -23.05417 -21.16545 -20.58229 -18.58599 -17.90528 -17.31914 -16.63545 -16.51511 -16.36626 -16.10824 -15.51049 -15.01821 -14.59004 -14.27216 -13.84403 -13.75034 -13.68131 -13.55598 -12.92403 -12.82691 -12.42657 -12.26733 -12.13344 -11.77543 -11.30153 -11.03217 -11.00868 -10.72743 -10.68977 -10.47175 -9.89533 -9.67847 -9.24017 -9.03559 -8.56470 -8.36059 -6.97592 -6.32408 -4.05287 0.47689 1.10978 2.31977 2.41381 2.62227 2.78026 3.17426 3.31950 3.48891 3.54850 3.60512 4.30126 4.45344 4.56907 4.64981 4.86038 4.87841 4.94653 4.95952 5.05638 5.06742 5.21260 5.22190 5.35043 5.63467 5.65340 5.89458 5.95554 6.06014 6.10796 6.18579 6.25745 6.75138 7.29582 7.58441 7.90494 8.20356 8.37735 9.13550 10.76690 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.021831 B = 0.003411 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.299533 B = 8205.714240 C = 9349.785088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.507 3.493 4 O -0.494 6.494 5 C -0.109 4.109 6 C -0.084 4.084 7 C -0.115 4.115 8 C -0.113 4.113 9 C 0.145 3.855 10 N -0.679 5.679 11 C 0.529 3.471 12 O -0.494 6.494 13 C -0.124 4.124 14 S -0.137 6.137 15 C -0.523 4.523 16 H 0.089 0.911 17 C 0.097 3.903 18 N -0.879 5.879 19 Si 0.856 3.144 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.235 1.235 23 C -0.059 4.059 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.414 0.586 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.271 0.729 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -25.097 6.982 26.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.351 3.649 4 O -0.382 6.382 5 C -0.111 4.111 6 C -0.103 4.103 7 C -0.133 4.133 8 C -0.133 4.133 9 C 0.050 3.950 10 N -0.326 5.326 11 C 0.316 3.684 12 O -0.366 6.366 13 C -0.274 4.274 14 S 0.089 5.911 15 C -0.670 4.670 16 H 0.107 0.893 17 C -0.112 4.112 18 N -0.515 5.515 19 Si 0.681 3.319 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.079 4.079 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.155 0.845 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.250 0.750 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.462 -24.708 6.009 26.008 hybrid contribution 0.956 0.634 0.420 1.221 sum -4.506 -24.075 6.428 25.322 Atomic orbital electron populations 1.23283 0.75944 1.03659 1.02846 1.86516 1.23578 1.32678 1.84615 1.21198 0.89141 0.81483 0.73088 1.90896 1.66619 1.35914 1.44740 1.18914 0.89014 0.94488 1.08699 1.21391 0.93919 0.97752 0.97230 1.20911 0.94174 0.97360 1.00862 1.21223 1.00290 0.91230 1.00584 1.17591 0.91293 0.85414 1.00687 1.43608 1.27561 1.08531 1.52905 1.20591 0.86131 0.84758 0.76925 1.90744 1.20017 1.82008 1.43794 1.23279 1.03398 0.94722 1.06043 1.84889 1.29558 1.08467 1.68175 1.22292 1.07396 0.96544 1.40807 0.89267 1.24706 0.97269 0.94366 0.94895 1.69935 1.36657 1.02509 1.42446 0.86748 0.83778 0.80839 0.80584 1.19125 1.19852 1.15917 1.21493 0.93464 0.98179 0.94807 0.91701 0.87983 0.91775 0.84473 0.84726 0.84867 0.75005 0.87978 0.87918 0.91869 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.91 9.81 -40.52 -0.40 -4.31 16 3 C 0.51 7.02 7.90 34.62 0.27 7.30 16 4 O -0.49 -8.51 16.13 -19.25 -0.31 -8.82 16 5 C -0.11 -1.41 5.87 -105.01 -0.62 -2.03 16 6 C -0.08 -0.80 9.61 -39.15 -0.38 -1.18 16 7 C -0.11 -0.92 10.02 -39.67 -0.40 -1.32 16 8 C -0.11 -1.02 9.96 -39.31 -0.39 -1.41 16 9 C 0.15 1.81 6.29 -83.75 -0.53 1.28 16 10 N -0.68 -8.41 5.34 -9.90 -0.05 -8.46 16 11 C 0.53 9.06 7.69 -10.99 -0.08 8.97 16 12 O -0.49 -10.42 13.30 5.55 0.07 -10.35 16 13 C -0.12 -2.28 6.16 36.00 0.22 -2.05 16 14 S -0.14 -3.42 18.55 -107.50 -1.99 -5.41 16 15 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 16 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 18 N -0.88 -26.35 13.97 55.49 0.78 -25.57 16 19 Si 0.86 21.74 27.74 -169.99 -4.72 17.02 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 23 C -0.06 -0.87 8.23 -38.97 -0.32 -1.19 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.14 1.02 7.61 -52.49 -0.40 0.62 16 28 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 29 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.41 3.53 8.82 -40.82 -0.36 3.17 16 31 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 32 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.16 2.83 5.82 -52.48 -0.31 2.52 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -35.78 319.04 -6.35 -42.13 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.60 Total: 1.06 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.94 Total: -2.10 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.72 Total: -34.04 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.63 Total: -23.48 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.78 -6.35 -42.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031545139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.429 kcal (2) G-P(sol) polarization free energy of solvation -35.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds