Wall clock time and date at job start Tue Mar 31 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34709 * 117.00165 * 2 1 4 4 O 1.21479 * 119.99545 * 0.02562 * 3 2 1 5 5 C 1.47743 * 120.00330 * 179.97438 * 3 2 1 6 6 C 1.39664 * 120.11186 * 359.97438 * 5 3 2 7 7 C 1.37971 * 119.98538 * 179.97438 * 6 5 3 8 8 C 1.38257 * 120.22781 * 0.06835 * 7 6 5 9 9 C 1.38952 * 120.23744 * 359.95170 * 8 7 6 10 10 N 1.39952 * 119.99919 * 180.02562 * 9 8 7 11 11 C 1.34781 * 120.00347 * 144.88734 * 10 9 8 12 12 O 1.21290 * 119.99640 * 4.62132 * 11 10 9 13 13 C 1.50696 * 120.00304 * 184.62546 * 11 10 9 14 14 S 1.80999 * 109.47133 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99748 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00455 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99543 * 179.97438 * 15 14 13 18 18 N 1.31637 * 119.99719 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 120.00408 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47136 * 89.99702 * 19 17 15 21 21 H 1.48496 * 109.47063 * 209.99657 * 19 17 15 22 22 H 1.48493 * 109.46766 * 329.99887 * 19 17 15 23 23 C 1.38617 * 120.00615 * 0.02562 * 9 8 7 24 24 H 1.09003 * 109.47392 * 60.00144 * 1 2 3 25 25 H 1.09001 * 109.47362 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47170 * 299.99837 * 1 2 3 27 27 H 1.07997 * 120.00732 * 0.04389 * 6 5 3 28 28 H 1.08004 * 119.88200 * 180.02562 * 7 6 5 29 29 H 1.08002 * 119.87993 * 179.97438 * 8 7 6 30 30 H 0.97007 * 119.99959 * 324.89550 * 10 9 8 31 31 H 1.09002 * 109.46572 * 300.00086 * 13 11 10 32 32 H 1.09001 * 109.47362 * 59.99657 * 13 11 10 33 33 H 0.96999 * 119.99991 * 179.97438 * 18 17 15 34 34 H 1.08005 * 120.11523 * 179.74720 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3020 0.1078 0.0017 7 6 5.6796 0.1831 0.0017 8 6 6.3094 1.4139 0.0020 9 6 5.5595 2.5837 0.0014 10 7 6.2022 3.8269 0.0012 11 6 5.6638 4.8638 -0.6707 12 8 4.5816 4.7439 -1.2050 13 6 6.4065 6.1722 -0.7582 14 16 5.4307 7.3568 -1.7177 15 6 6.5032 8.7537 -1.6608 16 1 7.4440 8.6911 -1.1343 17 6 6.1388 9.9345 -2.2927 18 7 6.9398 10.9782 -2.2498 19 14 4.5111 10.0431 -3.2029 20 1 3.4524 10.5064 -2.2703 21 1 4.6359 11.0051 -4.3273 22 1 4.1511 8.7042 -3.7346 23 6 4.1748 2.5194 0.0009 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.8137 -0.8555 0.0014 28 1 6.2680 -0.7226 0.0021 29 1 7.3882 1.4663 0.0024 30 1 7.0353 3.9423 0.4846 31 1 6.5698 6.5649 0.2454 32 1 7.3677 6.0125 -1.2467 33 1 6.6853 11.8034 -2.6918 34 1 3.5902 3.4275 0.0045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031545139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:36 Heat of formation + Delta-G solvation = -114.637585 kcal Electronic energy + Delta-G solvation = -20105.077314 eV Core-core repulsion = 16707.580925 eV Total energy + Delta-G solvation = -3397.496389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.90687 -41.25036 -39.36720 -37.57417 -35.95298 -34.69107 -32.44940 -32.07013 -29.82394 -28.64033 -27.86657 -25.26250 -24.03542 -22.10655 -21.77258 -19.99635 -19.43682 -18.41012 -17.93172 -17.46716 -17.37319 -17.11631 -16.99132 -16.72886 -15.91546 -15.61790 -15.15232 -14.88709 -14.71753 -14.62381 -14.57306 -13.99795 -13.54807 -13.38078 -13.16571 -13.04920 -12.91185 -12.72959 -12.63653 -11.90052 -11.88839 -11.78738 -11.52357 -11.19535 -11.01698 -10.56253 -10.09296 -9.32246 -9.02494 -8.53855 -6.24801 -0.40765 0.21944 0.92774 1.28943 1.30014 1.42015 1.49340 1.52236 1.61187 2.06921 2.22536 2.67031 2.74282 2.84653 3.60382 3.67286 3.91594 4.09063 4.15546 4.18545 4.28332 4.28734 4.36841 4.40691 4.48110 4.66494 4.84659 5.09846 5.22609 5.25987 5.31088 5.38124 5.69142 5.86214 6.10101 6.27109 6.59310 6.91776 7.00708 8.58396 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.021831 B = 0.003411 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.299533 B = 8205.714240 C = 9349.785088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.505 3.495 4 O -0.544 6.544 5 C -0.133 4.133 6 C -0.068 4.068 7 C -0.101 4.101 8 C -0.091 4.091 9 C 0.121 3.879 10 N -0.654 5.654 11 C 0.532 3.468 12 O -0.541 6.541 13 C -0.107 4.107 14 S -0.181 6.181 15 C -0.525 4.525 16 H 0.068 0.932 17 C 0.048 3.952 18 N -0.915 5.915 19 Si 0.910 3.090 20 H -0.265 1.265 21 H -0.258 1.258 22 H -0.239 1.239 23 C -0.089 4.089 24 H 0.056 0.944 25 H 0.143 0.857 26 H 0.060 0.940 27 H 0.164 0.836 28 H 0.182 0.818 29 H 0.172 0.828 30 H 0.434 0.566 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.277 0.723 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -28.761 7.386 29.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.352 3.648 4 O -0.435 6.435 5 C -0.135 4.135 6 C -0.087 4.087 7 C -0.119 4.119 8 C -0.111 4.111 9 C 0.027 3.973 10 N -0.302 5.302 11 C 0.319 3.681 12 O -0.417 6.417 13 C -0.258 4.258 14 S 0.046 5.954 15 C -0.673 4.673 16 H 0.086 0.914 17 C -0.158 4.158 18 N -0.553 5.553 19 Si 0.733 3.267 20 H -0.189 1.189 21 H -0.182 1.182 22 H -0.163 1.163 23 C -0.110 4.110 24 H 0.075 0.925 25 H 0.161 0.839 26 H 0.079 0.921 27 H 0.181 0.819 28 H 0.200 0.800 29 H 0.190 0.810 30 H 0.274 0.726 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.131 -28.425 6.445 29.438 hybrid contribution 0.617 1.526 0.409 1.696 sum -3.515 -26.899 6.854 27.980 Atomic orbital electron populations 1.23616 0.74333 1.06168 1.02388 1.86505 1.25142 1.30933 1.83860 1.21583 0.89828 0.81545 0.71835 1.90866 1.67725 1.37598 1.47349 1.18993 0.88665 0.95193 1.10609 1.21762 0.94752 0.97299 0.94855 1.21474 0.93614 0.98607 0.98157 1.21663 1.01980 0.89938 0.97515 1.17773 0.90662 0.86184 1.02659 1.43207 1.27773 1.07671 1.51588 1.20297 0.85387 0.85231 0.77168 1.90753 1.21941 1.82770 1.46267 1.23236 1.02977 0.93671 1.05913 1.84892 1.31011 1.09263 1.70273 1.22430 1.07007 0.97965 1.39907 0.91430 1.25504 1.00226 0.94255 0.95807 1.70006 1.38361 1.03228 1.43716 0.85924 0.80085 0.80801 0.79914 1.18937 1.18174 1.16345 1.21259 0.94647 0.97439 0.97656 0.92490 0.83868 0.92073 0.81869 0.80049 0.81023 0.72565 0.86049 0.85689 0.91329 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.33 9.81 -56.19 -0.55 -7.88 16 3 C 0.51 14.46 7.90 70.34 0.56 15.01 16 4 O -0.54 -20.22 16.13 19.90 0.32 -19.90 16 5 C -0.13 -3.39 5.87 -20.11 -0.12 -3.51 16 6 C -0.07 -1.06 9.61 22.55 0.22 -0.85 16 7 C -0.10 -1.07 10.02 22.21 0.22 -0.85 16 8 C -0.09 -1.23 9.96 22.45 0.22 -1.01 16 9 C 0.12 2.82 6.29 38.11 0.24 3.06 16 10 N -0.65 -15.14 5.34 -303.61 -1.62 -16.76 16 11 C 0.53 18.16 7.69 87.66 0.67 18.84 16 12 O -0.54 -23.79 13.30 -3.06 -0.04 -23.83 16 13 C -0.11 -3.87 6.16 71.23 0.44 -3.43 16 14 S -0.18 -9.15 18.55 -56.49 -1.05 -10.19 16 15 C -0.53 -30.33 10.04 67.95 0.68 -29.65 16 16 H 0.07 4.06 8.03 -2.91 -0.02 4.04 16 17 C 0.05 2.80 5.50 84.86 0.47 3.27 16 18 N -0.92 -55.63 13.97 21.65 0.30 -55.32 16 19 Si 0.91 45.55 27.74 68.60 1.90 47.45 16 20 H -0.26 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 23 C -0.09 -2.71 8.23 22.67 0.19 -2.53 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.16 1.68 7.61 -2.91 -0.02 1.66 16 28 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 29 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 30 H 0.43 6.11 8.82 -92.70 -0.82 5.29 16 31 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 32 H 0.13 3.98 8.14 -2.39 -0.02 3.96 16 33 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 34 H 0.11 4.42 5.82 -2.91 -0.02 4.40 16 Total: -1.00 -83.71 319.04 4.54 -79.17 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.29 Total: 7.29 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 4.99 Total: -0.01 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -1.32 Total: -72.09 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.27 Total: -51.62 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -1.05 Total: -10.19 kcal Total: -83.71 4.54 -79.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031545139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.469 kcal (2) G-P(sol) polarization free energy of solvation -83.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds