Wall clock time and date at job start Tue Mar 31 2020 07:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 119.99855 * 2 1 4 4 H 1.48499 * 109.47005 * 269.99751 * 3 2 1 5 5 H 1.48494 * 109.47488 * 29.99704 * 3 2 1 6 6 H 1.48496 * 109.46912 * 150.00080 * 3 2 1 7 7 C 1.38799 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00008 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99581 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99863 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47209 * 179.97438 * 10 9 7 12 12 O 1.21299 * 119.99880 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00348 * 179.97438 * 11 10 9 14 14 C 1.40094 * 120.00512 * 175.36974 * 13 11 10 15 15 C 1.38870 * 119.99834 * 35.34247 * 14 13 11 16 16 C 1.38045 * 119.99774 * 180.20603 * 15 14 13 17 17 C 1.38859 * 120.00120 * 359.52316 * 16 15 14 18 18 N 1.40110 * 119.99926 * 180.27045 * 17 16 15 19 19 C 1.34779 * 120.00303 * 324.90530 * 18 17 16 20 20 N 1.34772 * 119.99951 * 184.61781 * 19 18 17 21 21 O 1.21582 * 119.99697 * 4.61827 * 19 18 17 22 22 C 1.38864 * 120.00019 * 0.24874 * 17 16 15 23 23 C 1.38048 * 120.00012 * 359.97438 * 22 17 16 24 24 H 0.97001 * 120.00065 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47014 * 60.00040 * 10 9 7 26 26 H 1.08998 * 109.47031 * 299.99994 * 10 9 7 27 27 H 0.97002 * 119.99757 * 355.37215 * 13 11 10 28 28 H 1.07999 * 119.99997 * 0.02562 * 15 14 13 29 29 H 1.07995 * 120.00048 * 179.79039 * 16 15 14 30 30 H 0.97005 * 119.99534 * 144.90165 * 18 17 16 31 31 H 0.96997 * 120.00537 * 0.02562 * 20 19 18 32 32 H 0.97004 * 120.00171 * 179.97438 * 20 19 18 33 33 H 1.08004 * 119.99835 * 179.97438 * 22 17 16 34 34 H 1.08003 * 119.99707 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5730 -3.2325 0.0008 12 8 6.3440 -2.2962 0.0005 13 7 6.0456 -4.4947 0.0011 14 6 7.4238 -4.7267 -0.0969 15 6 8.3194 -3.8547 0.5080 16 6 9.6775 -4.0810 0.4078 17 6 10.1477 -5.1859 -0.2895 18 7 11.5259 -5.4187 -0.3863 19 6 12.3798 -4.3801 -0.4803 20 7 13.6956 -4.6043 -0.6670 21 8 11.9631 -3.2410 -0.3966 22 6 9.2519 -6.0605 -0.8903 23 6 7.8940 -5.8317 -0.7940 24 1 -0.4850 0.8401 -0.0004 25 1 3.6440 -3.4314 -0.8893 26 1 3.6433 -3.4318 0.8906 27 1 5.4316 -5.2425 0.0692 28 1 7.9535 -2.9980 1.0544 29 1 10.3742 -3.4010 0.8754 30 1 11.8656 -6.3273 -0.3857 31 1 14.0281 -5.5131 -0.7341 32 1 14.3102 -3.8569 -0.7349 33 1 9.6177 -6.9197 -1.4330 34 1 7.1973 -6.5122 -1.2611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032937365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:20 Heat of formation + Delta-G solvation = -32.125780 kcal Electronic energy + Delta-G solvation = -19939.632835 eV Core-core repulsion = 16578.007177 eV Total energy + Delta-G solvation = -3361.625657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88092 -40.00143 -38.18198 -35.38255 -34.31938 -33.35393 -32.44417 -30.99721 -30.03071 -27.71339 -25.61930 -23.29527 -23.11395 -21.21256 -20.45962 -18.78753 -18.30651 -18.01274 -17.40734 -16.52407 -16.32684 -15.72325 -15.25124 -14.99432 -14.76653 -14.43985 -14.28280 -13.87037 -13.52522 -13.37953 -12.96353 -12.79215 -12.72569 -12.23925 -11.68956 -11.27391 -11.00782 -10.82202 -10.64216 -10.36664 -10.08788 -9.86275 -9.71255 -9.54617 -9.00592 -8.92178 -8.52193 -7.75586 -6.93436 -6.29442 -4.01763 1.18015 1.37091 2.43882 2.69801 2.74214 2.93567 3.27014 3.34557 3.51499 3.61306 3.79781 4.03032 4.33094 4.67101 4.79803 4.89863 5.09684 5.16679 5.31099 5.39603 5.49961 5.70351 5.75086 5.96052 5.99028 6.04231 6.34791 6.41725 6.46285 6.53750 6.60625 7.06152 7.47037 7.49291 7.93500 8.20566 8.34761 8.40881 9.16618 10.79660 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.032453 B = 0.002867 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.580980 B = 9765.017830 C =10520.796176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.138 6.138 10 C -0.124 4.124 11 C 0.529 3.471 12 O -0.497 6.497 13 N -0.679 5.679 14 C 0.142 3.858 15 C -0.103 4.103 16 C -0.098 4.098 17 C 0.135 3.865 18 N -0.683 5.683 19 C 0.702 3.298 20 N -0.864 5.864 21 O -0.571 6.571 22 C -0.127 4.127 23 C -0.131 4.131 24 H 0.271 0.729 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.410 0.590 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.405 0.595 31 H 0.397 0.603 32 H 0.418 0.582 33 H 0.126 0.874 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.036 -18.042 -0.579 30.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.088 5.912 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.369 6.369 13 N -0.326 5.326 14 C 0.047 3.953 15 C -0.123 4.123 16 C -0.119 4.119 17 C 0.040 3.960 18 N -0.332 5.332 19 C 0.401 3.599 20 N -0.433 5.433 21 O -0.447 6.447 22 C -0.148 4.148 23 C -0.152 4.152 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.246 0.754 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.240 0.760 31 H 0.225 0.775 32 H 0.250 0.750 33 H 0.144 0.856 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 24.617 -15.410 -0.513 29.047 hybrid contribution -0.507 -1.365 -0.208 1.471 sum 24.110 -16.775 -0.721 29.380 Atomic orbital electron populations 1.69937 1.05907 1.27803 1.47962 1.24711 0.94462 0.98986 0.93137 0.86737 0.81902 0.83257 0.79987 1.19177 1.19911 1.15880 1.22305 0.88165 0.97576 1.58930 0.89305 1.84852 1.09410 0.99491 1.97440 1.23280 0.93108 1.04911 1.06153 1.20501 0.90991 0.81916 0.74982 1.90723 1.58380 1.41999 1.45845 1.43605 1.05530 1.09111 1.74308 1.17827 0.83445 0.96357 0.97716 1.21314 0.91883 1.00119 0.99034 1.21216 0.95422 0.97242 0.98014 1.17450 0.81159 0.97793 0.99591 1.42477 1.04764 1.08756 1.77231 1.15983 0.81445 0.84775 0.77736 1.42969 1.06913 1.12497 1.80883 1.91034 1.76503 1.20633 1.56502 1.20551 0.92236 1.00891 1.01158 1.20648 0.95159 0.98882 1.00478 0.91912 0.88114 0.88071 0.75417 0.83761 0.84031 0.76028 0.77523 0.74967 0.85612 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.53 13.97 55.49 0.78 -25.76 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.90 27.74 -169.99 -4.72 17.18 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.23 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 10 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 11 C 0.53 9.40 7.69 -10.99 -0.08 9.31 16 12 O -0.50 -10.72 13.31 5.54 0.07 -10.65 16 13 N -0.68 -9.01 5.34 -9.82 -0.05 -9.06 16 14 C 0.14 1.91 6.30 -83.62 -0.53 1.39 16 15 C -0.10 -1.57 8.69 -39.42 -0.34 -1.91 16 16 C -0.10 -1.38 8.69 -39.42 -0.34 -1.72 16 17 C 0.13 1.50 6.30 -83.61 -0.53 0.98 16 18 N -0.68 -5.48 5.35 -14.19 -0.08 -5.56 16 19 C 0.70 6.95 8.68 -86.92 -0.75 6.20 16 20 N -0.86 -4.15 8.88 27.63 0.25 -3.90 16 21 O -0.57 -8.71 14.61 5.29 0.08 -8.63 16 22 C -0.13 -1.20 9.96 -39.42 -0.39 -1.59 16 23 C -0.13 -1.37 9.96 -39.42 -0.39 -1.76 16 24 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 26 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 27 H 0.41 3.90 8.82 -40.82 -0.36 3.54 16 28 H 0.14 2.51 6.24 -52.49 -0.33 2.18 16 29 H 0.14 2.15 6.22 -52.49 -0.33 1.83 16 30 H 0.40 1.56 8.84 -40.82 -0.36 1.20 16 31 H 0.40 0.46 8.85 -40.82 -0.36 0.10 16 32 H 0.42 1.74 8.93 -40.82 -0.36 1.37 16 33 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 34 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -38.10 313.30 -7.24 -45.34 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.37 Total: 4.99 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.93 Total: -3.19 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.89 Total: -44.28 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.15 Total: -19.28 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -38.10 -7.24 -45.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032937365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.216 kcal (2) G-P(sol) polarization free energy of solvation -38.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds