Wall clock time and date at job start Tue Mar 31 2020 07:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 119.99855 * 2 1 4 4 H 1.48499 * 109.47005 * 269.99751 * 3 2 1 5 5 H 1.48494 * 109.47488 * 29.99704 * 3 2 1 6 6 H 1.48496 * 109.46912 * 150.00080 * 3 2 1 7 7 C 1.38799 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00008 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99581 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99863 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47209 * 179.97438 * 10 9 7 12 12 O 1.21299 * 119.99880 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00348 * 179.97438 * 11 10 9 14 14 C 1.40094 * 120.00512 * 175.36974 * 13 11 10 15 15 C 1.38870 * 119.99834 * 35.34247 * 14 13 11 16 16 C 1.38045 * 119.99774 * 180.20603 * 15 14 13 17 17 C 1.38859 * 120.00120 * 359.52316 * 16 15 14 18 18 N 1.40110 * 119.99926 * 180.27045 * 17 16 15 19 19 C 1.34779 * 120.00303 * 324.90530 * 18 17 16 20 20 N 1.34772 * 119.99951 * 184.61781 * 19 18 17 21 21 O 1.21582 * 119.99697 * 4.61827 * 19 18 17 22 22 C 1.38864 * 120.00019 * 0.24874 * 17 16 15 23 23 C 1.38048 * 120.00012 * 359.97438 * 22 17 16 24 24 H 0.97001 * 120.00065 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47014 * 60.00040 * 10 9 7 26 26 H 1.08998 * 109.47031 * 299.99994 * 10 9 7 27 27 H 0.97002 * 119.99757 * 355.37215 * 13 11 10 28 28 H 1.07999 * 119.99997 * 0.02562 * 15 14 13 29 29 H 1.07995 * 120.00048 * 179.79039 * 16 15 14 30 30 H 0.97005 * 119.99534 * 144.90165 * 18 17 16 31 31 H 0.96997 * 120.00537 * 0.02562 * 20 19 18 32 32 H 0.97004 * 120.00171 * 179.97438 * 20 19 18 33 33 H 1.08004 * 119.99835 * 179.97438 * 22 17 16 34 34 H 1.08003 * 119.99707 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5730 -3.2325 0.0008 12 8 6.3440 -2.2962 0.0005 13 7 6.0456 -4.4947 0.0011 14 6 7.4238 -4.7267 -0.0969 15 6 8.3194 -3.8547 0.5080 16 6 9.6775 -4.0810 0.4078 17 6 10.1477 -5.1859 -0.2895 18 7 11.5259 -5.4187 -0.3863 19 6 12.3798 -4.3801 -0.4803 20 7 13.6956 -4.6043 -0.6670 21 8 11.9631 -3.2410 -0.3966 22 6 9.2519 -6.0605 -0.8903 23 6 7.8940 -5.8317 -0.7940 24 1 -0.4850 0.8401 -0.0004 25 1 3.6440 -3.4314 -0.8893 26 1 3.6433 -3.4318 0.8906 27 1 5.4316 -5.2425 0.0692 28 1 7.9535 -2.9980 1.0544 29 1 10.3742 -3.4010 0.8754 30 1 11.8656 -6.3273 -0.3857 31 1 14.0281 -5.5131 -0.7341 32 1 14.3102 -3.8569 -0.7349 33 1 9.6177 -6.9197 -1.4330 34 1 7.1973 -6.5122 -1.2611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032937365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:20 Heat of formation + Delta-G solvation = -63.915172 kcal Electronic energy + Delta-G solvation = -19941.011326 eV Core-core repulsion = 16578.007177 eV Total energy + Delta-G solvation = -3363.004149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.79865 -41.11073 -39.23776 -36.43116 -35.19748 -34.67697 -34.19831 -31.93174 -31.38507 -28.79579 -27.83543 -24.22940 -24.10189 -22.05661 -21.69004 -20.01849 -19.40622 -19.02476 -18.65586 -17.93078 -17.12071 -17.00480 -16.78739 -16.31817 -16.03234 -15.66197 -15.28001 -15.22566 -14.93667 -14.78696 -14.36572 -13.98006 -13.68970 -13.58652 -13.35062 -13.03202 -12.69903 -12.67888 -11.89854 -11.80973 -11.30427 -11.17968 -10.96850 -10.82704 -10.58256 -10.54314 -9.87951 -9.02136 -8.69493 -8.52273 -6.23015 0.19682 0.45089 0.95655 1.30410 1.44917 1.47594 1.53262 1.78516 2.03976 2.16567 2.24478 2.69727 2.85943 2.86984 3.53279 3.72058 4.00373 4.06334 4.21208 4.40562 4.43994 4.49971 4.58087 4.81361 5.14153 5.29101 5.37174 5.51394 5.54963 5.70572 5.86858 5.95694 6.08858 6.11469 6.37533 6.93240 6.99863 7.09384 7.55577 8.59913 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.032453 B = 0.002867 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.580980 B = 9765.017830 C =10520.796176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.239 1.239 7 C -0.526 4.526 8 H 0.067 0.933 9 S -0.179 6.179 10 C -0.108 4.108 11 C 0.532 3.468 12 O -0.543 6.543 13 N -0.653 5.653 14 C 0.117 3.883 15 C -0.127 4.127 16 C -0.121 4.121 17 C 0.139 3.861 18 N -0.667 5.667 19 C 0.694 3.306 20 N -0.838 5.838 21 O -0.631 6.631 22 C -0.112 4.112 23 C -0.113 4.113 24 H 0.277 0.723 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.431 0.569 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.429 0.571 31 H 0.418 0.582 32 H 0.423 0.577 33 H 0.173 0.827 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.893 -21.152 -1.751 33.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.163 1.163 7 C -0.674 4.674 8 H 0.085 0.915 9 S 0.047 5.953 10 C -0.258 4.258 11 C 0.319 3.681 12 O -0.419 6.419 13 N -0.301 5.301 14 C 0.023 3.977 15 C -0.148 4.148 16 C -0.143 4.143 17 C 0.043 3.957 18 N -0.318 5.318 19 C 0.393 3.607 20 N -0.407 5.407 21 O -0.511 6.511 22 C -0.133 4.133 23 C -0.134 4.134 24 H 0.086 0.914 25 H 0.139 0.861 26 H 0.140 0.860 27 H 0.270 0.730 28 H 0.127 0.873 29 H 0.136 0.864 30 H 0.268 0.732 31 H 0.250 0.750 32 H 0.257 0.743 33 H 0.191 0.809 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 26.527 -18.647 -1.686 32.469 hybrid contribution -0.926 -0.620 0.148 1.125 sum 25.601 -19.267 -1.538 32.078 Atomic orbital electron populations 1.70008 1.07174 1.28987 1.49150 1.25519 0.95258 1.02116 0.92996 0.85904 0.80658 0.79894 0.80153 1.18812 1.18296 1.16301 1.22441 0.89995 0.96799 1.58137 0.91525 1.84846 1.06744 1.06057 1.97614 1.23239 0.94572 0.99846 1.08168 1.20240 0.89993 0.82959 0.74895 1.90729 1.59063 1.43777 1.48378 1.43223 1.06176 1.08054 1.72671 1.17975 0.82732 0.97612 0.99393 1.21096 0.93026 1.00135 1.00501 1.21074 0.94613 0.98749 0.99821 1.17584 0.82908 0.96833 0.98382 1.42266 1.03455 1.09671 1.76375 1.16286 0.82780 0.84159 0.77511 1.42730 1.05029 1.14109 1.78869 1.91015 1.77805 1.23192 1.59126 1.21023 0.91361 1.01195 0.99674 1.21060 0.96370 0.97481 0.98485 0.91358 0.86059 0.86040 0.72976 0.87325 0.86439 0.73184 0.74989 0.74334 0.80928 0.81543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.86 13.97 21.65 0.30 -55.55 16 2 C 0.05 2.75 5.50 84.86 0.47 3.22 16 3 Si 0.91 45.71 27.74 68.60 1.90 47.62 16 4 H -0.26 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 7 C -0.53 -30.59 10.04 67.95 0.68 -29.91 16 8 H 0.07 4.04 8.03 -2.91 -0.02 4.02 16 9 S -0.18 -9.13 18.55 -56.49 -1.05 -10.17 16 10 C -0.11 -3.98 6.16 71.23 0.44 -3.54 16 11 C 0.53 18.74 7.69 87.66 0.67 19.41 16 12 O -0.54 -24.21 13.31 -3.09 -0.04 -24.25 16 13 N -0.65 -16.25 5.34 -303.38 -1.62 -17.87 16 14 C 0.12 3.01 6.30 38.12 0.24 3.25 16 15 C -0.13 -4.03 8.69 22.38 0.19 -3.84 16 16 C -0.12 -3.54 8.69 22.37 0.19 -3.35 16 17 C 0.14 2.82 6.30 38.12 0.24 3.06 16 18 N -0.67 -8.99 5.35 -317.06 -1.70 -10.68 16 19 C 0.69 12.92 8.68 179.06 1.55 14.47 16 20 N -0.84 -6.19 8.88 -184.75 -1.64 -7.83 16 21 O -0.63 -19.80 14.61 -3.97 -0.06 -19.86 16 22 C -0.11 -1.61 9.96 22.37 0.22 -1.39 16 23 C -0.11 -1.91 9.96 22.37 0.22 -1.69 16 24 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 25 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 26 H 0.12 4.01 8.14 -2.40 -0.02 3.99 16 27 H 0.43 6.88 8.82 -92.71 -0.82 6.06 16 28 H 0.11 4.17 6.24 -2.91 -0.02 4.15 16 29 H 0.12 3.93 6.22 -2.91 -0.02 3.91 16 30 H 0.43 1.52 8.84 -92.70 -0.82 0.70 16 31 H 0.42 -0.44 8.85 -92.71 -0.82 -1.26 16 32 H 0.42 2.79 8.93 -92.71 -0.83 1.96 16 33 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 34 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -88.20 313.30 -0.88 -89.08 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -2.12 Total: 9.82 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.13 Total: -0.29 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -4.65 Total: -91.94 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.10 Total: -44.12 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.62 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.05 Total: -10.17 kcal Total: -88.20 -0.88 -89.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032937365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.168 kcal (2) G-P(sol) polarization free energy of solvation -88.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds