Wall clock time and date at job start Tue Mar 31 2020 06:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00165 * 2 1 4 4 O 1.20833 * 119.99430 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00297 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46699 * 179.97438 * 5 3 2 7 7 C 1.34783 * 119.99450 * 179.97438 * 6 5 3 8 8 O 1.21606 * 120.00135 * 0.02562 * 7 6 5 9 9 C 1.47433 * 119.99777 * 179.97438 * 7 6 5 10 10 C 1.39678 * 120.21285 * 359.97438 * 9 7 6 11 11 C 1.37809 * 119.93418 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.38295 * 0.02562 * 11 10 9 13 13 C 1.37910 * 120.43889 * 0.02562 * 12 11 10 14 14 C 1.39110 * 120.04977 * 359.97438 * 13 12 11 15 15 S 1.76195 * 120.19106 * 180.02562 * 14 13 12 16 16 C 1.76205 * 99.99901 * 6.85682 * 15 14 13 17 17 H 1.08005 * 119.99976 * 5.65159 * 16 15 14 18 18 C 1.38804 * 120.00248 * 185.65626 * 16 15 14 19 19 N 1.31554 * 120.00297 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 119.99901 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.46956 * 89.99761 * 20 18 16 22 22 H 1.48501 * 109.46925 * 210.00084 * 20 18 16 23 23 H 1.48502 * 109.47012 * 329.99898 * 20 18 16 24 24 H 1.09006 * 109.46703 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47399 * 299.99905 * 1 2 3 26 26 H 1.09002 * 109.47108 * 60.00224 * 1 2 3 27 27 H 1.09000 * 109.47436 * 60.00107 * 5 3 2 28 28 H 1.09003 * 109.46802 * 299.99743 * 5 3 2 29 29 H 0.97003 * 120.00826 * 359.97438 * 6 5 3 30 30 H 1.07994 * 120.03669 * 0.27820 * 10 9 7 31 31 H 1.08006 * 119.80802 * 179.97438 * 11 10 9 32 32 H 1.08007 * 119.77539 * 180.02562 * 12 11 10 33 33 H 1.07997 * 119.97290 * 179.97438 * 13 12 11 34 34 H 0.96996 * 120.00115 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 -0.0011 7 6 5.2920 2.9951 -0.0011 8 8 6.1295 2.1134 -0.0012 9 6 5.7100 4.4089 -0.0022 10 6 4.7517 5.4252 -0.0037 11 6 5.1488 6.7448 -0.0052 12 6 6.4963 7.0717 -0.0058 13 6 7.4556 6.0809 -0.0054 14 6 7.0751 4.7429 -0.0039 15 16 8.2975 3.4740 -0.0027 16 6 9.7506 4.4492 0.2032 17 1 9.6675 5.5121 0.3763 18 6 11.0019 3.8516 0.1428 19 7 12.0868 4.5798 0.2960 20 14 11.1456 2.0134 -0.1574 21 1 11.2263 1.7552 -1.6174 22 1 12.3707 1.4980 0.5050 23 1 9.9540 1.3260 0.4018 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.9558 0.7810 -0.8908 28 1 3.9564 0.7806 0.8892 29 1 3.3135 3.3831 -0.0014 30 1 3.7006 5.1771 0.0004 31 1 4.4061 7.5290 -0.0068 32 1 6.7966 8.1092 -0.0066 33 1 8.5030 6.3440 -0.0063 34 1 12.9612 4.1621 0.2542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035165165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:05 Heat of formation + Delta-G solvation = -85.780494 kcal Electronic energy + Delta-G solvation = -20441.757119 eV Core-core repulsion = 17045.512067 eV Total energy + Delta-G solvation = -3396.245052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91241 -39.56878 -37.65761 -36.90398 -34.46553 -32.72627 -31.09619 -30.39916 -29.13205 -26.99883 -25.92152 -23.33953 -22.09104 -21.36220 -20.37087 -18.75730 -17.74994 -17.43736 -17.00425 -16.52133 -15.91551 -15.55637 -15.13715 -15.08656 -14.54422 -14.03071 -13.83133 -13.77584 -13.54381 -13.16712 -12.81053 -12.61472 -12.38692 -12.01357 -11.90692 -11.34766 -11.19987 -11.19592 -10.97704 -10.86209 -10.52717 -9.93576 -9.71762 -9.47766 -9.11967 -8.85622 -8.44890 -8.28419 -6.82419 -6.49222 -4.20802 1.37340 1.79254 1.90958 2.15064 2.85006 3.19760 3.31455 3.35034 3.36700 3.46347 4.13832 4.35643 4.36050 4.62071 4.74078 4.81749 4.93903 5.06662 5.11983 5.15759 5.25920 5.32430 5.52548 5.84131 5.92374 6.04518 6.24390 6.37133 6.49368 6.73718 6.93006 7.04891 7.30310 7.43986 7.64806 7.74101 8.33363 8.50681 8.94676 10.57993 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.004292 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.472525 B = 6522.467806 C = 8013.554858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.461 3.539 4 O -0.505 6.505 5 C 0.131 3.869 6 N -0.732 5.732 7 C 0.561 3.439 8 O -0.509 6.509 9 C -0.173 4.173 10 C -0.063 4.063 11 C -0.176 4.176 12 C -0.074 4.074 13 C -0.145 4.145 14 C -0.028 4.028 15 S 0.086 5.914 16 C -0.579 4.579 17 H 0.106 0.894 18 C 0.103 3.897 19 N -0.862 5.862 20 Si 0.850 3.150 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.234 1.234 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.408 0.592 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.022 -4.956 -0.842 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.303 3.697 4 O -0.393 6.393 5 C 0.006 3.994 6 N -0.392 5.392 7 C 0.350 3.650 8 O -0.386 6.386 9 C -0.188 4.188 10 C -0.083 4.083 11 C -0.200 4.200 12 C -0.096 4.096 13 C -0.169 4.169 14 C -0.147 4.147 15 S 0.347 5.653 16 C -0.725 4.725 17 H 0.124 0.876 18 C -0.108 4.108 19 N -0.496 5.496 20 Si 0.674 3.326 21 H -0.187 1.187 22 H -0.194 1.194 23 H -0.158 1.158 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.246 0.754 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.165 0.835 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.212 -6.741 -0.931 20.381 hybrid contribution -0.208 1.188 -0.002 1.206 sum -19.420 -5.553 -0.933 20.220 Atomic orbital electron populations 1.23320 0.75744 1.03956 1.02761 1.86495 1.23835 1.32728 1.83930 1.23728 0.92097 0.81674 0.72161 1.90669 1.66894 1.36314 1.45407 1.20558 0.86113 0.86257 1.06498 1.45664 1.08366 1.06371 1.78785 1.18252 0.81007 0.89309 0.76392 1.90779 1.50143 1.49145 1.48564 1.19028 0.92703 0.91456 1.15581 1.20957 0.97392 0.92778 0.97195 1.20741 0.95840 0.95587 1.07837 1.21164 0.92924 0.98806 0.96733 1.21576 1.01302 0.91261 1.02796 1.22507 0.96199 0.98906 0.97130 1.84073 0.95608 1.06868 1.78702 1.23520 0.92318 0.99782 1.56922 0.87617 1.24810 0.94582 0.98822 0.92575 1.69906 0.98165 1.36551 1.44962 0.86870 0.80531 0.84869 0.80348 1.18731 1.19375 1.15755 0.87819 0.91684 0.91681 0.86954 0.86933 0.75393 0.86726 0.86671 0.86526 0.83536 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.28 10.57 -39.26 -0.41 -3.70 16 3 C 0.46 4.94 8.03 36.01 0.29 5.23 16 4 O -0.51 -6.43 15.42 -18.76 -0.29 -6.71 16 5 C 0.13 1.47 6.27 -5.19 -0.03 1.44 16 6 N -0.73 -10.10 5.48 -62.56 -0.34 -10.44 16 7 C 0.56 10.13 7.75 -12.51 -0.10 10.03 16 8 O -0.51 -10.78 13.77 5.27 0.07 -10.70 16 9 C -0.17 -3.28 5.89 -104.75 -0.62 -3.90 16 10 C -0.06 -0.98 9.53 -39.20 -0.37 -1.35 16 11 C -0.18 -2.65 10.02 -39.58 -0.40 -3.04 16 12 C -0.07 -1.25 10.03 -39.55 -0.40 -1.64 16 13 C -0.14 -2.99 9.22 -39.38 -0.36 -3.35 16 14 C -0.03 -0.63 6.14 -38.39 -0.24 -0.86 16 15 S 0.09 2.16 16.53 -107.50 -1.78 0.39 16 16 C -0.58 -16.11 9.54 30.94 0.30 -15.82 16 17 H 0.11 3.03 5.21 -52.48 -0.27 2.76 16 18 C 0.10 2.89 5.50 -17.46 -0.10 2.80 16 19 N -0.86 -24.98 13.96 55.49 0.77 -24.21 16 20 Si 0.85 20.65 27.74 -169.99 -4.71 15.94 16 21 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.23 -5.66 6.74 56.52 0.38 -5.28 16 24 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 27 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.41 5.12 5.47 -40.82 -0.22 4.90 16 30 H 0.11 1.41 6.40 -52.49 -0.34 1.07 16 31 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 32 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.15 3.29 5.04 -52.49 -0.26 3.03 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 310.13 15.07 4.67 4.67 Total: -1.00 -32.41 310.13 -6.19 -38.60 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.21 Total: 5.34 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -0.96 Total: -9.18 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.43 Total: -34.65 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.63 Total: -21.12 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.71 Total: 15.94 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.78 Total: 0.39 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.41 -6.19 -38.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035165165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.181 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds