Wall clock time and date at job start Tue Mar 31 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34749 * 116.99512 * 2 1 4 4 O 1.21520 * 120.00677 * 0.02562 * 3 2 1 5 5 C 1.47390 * 119.99906 * 180.02562 * 3 2 1 6 6 C 1.39738 * 120.20171 * 355.04838 * 5 3 2 7 7 C 1.37776 * 119.91518 * 179.97438 * 6 5 3 8 8 C 1.38583 * 120.33932 * 359.97438 * 7 6 5 9 9 C 1.38016 * 120.41514 * 359.97438 * 8 7 6 10 10 C 1.38851 * 120.07463 * 0.03175 * 9 8 7 11 11 N 1.39261 * 120.16838 * 179.97438 * 10 9 8 12 12 C 1.34773 * 119.99692 * 34.93298 * 11 10 9 13 13 O 1.21273 * 120.00513 * 5.28041 * 12 11 10 14 14 C 1.50706 * 119.99930 * 185.27611 * 12 11 10 15 15 S 1.80994 * 109.47269 * 180.02562 * 14 12 11 16 16 C 1.76196 * 100.00189 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99737 * 359.97438 * 16 15 14 18 18 C 1.38796 * 120.00481 * 179.97438 * 16 15 14 19 19 N 1.31639 * 119.99786 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00593 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.46955 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47333 * 119.99732 * 20 18 16 23 23 H 1.48499 * 109.47185 * 240.00015 * 20 18 16 24 24 H 1.09000 * 109.46608 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46876 * 299.99223 * 1 2 3 26 26 H 1.08998 * 109.47361 * 60.00177 * 1 2 3 27 27 H 1.08002 * 120.04541 * 359.97082 * 6 5 3 28 28 H 1.08001 * 119.83417 * 179.97438 * 7 6 5 29 29 H 1.07998 * 119.79389 * 180.02562 * 8 7 6 30 30 H 1.07995 * 119.96528 * 179.74569 * 9 8 7 31 31 H 0.97004 * 120.00091 * 214.93345 * 11 10 9 32 32 H 1.09003 * 109.46913 * 300.00464 * 14 12 11 33 33 H 1.08996 * 109.46937 * 59.99995 * 14 12 11 34 34 H 0.96996 * 119.99818 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5356 1.2779 -0.0006 6 6 4.3007 0.1132 0.1031 7 6 5.6762 0.1922 0.1015 8 6 6.3066 1.4219 -0.0031 9 6 5.5645 2.5809 -0.1073 10 6 4.1772 2.5213 -0.1073 11 7 3.4265 3.6896 -0.2118 12 6 3.8717 4.7110 -0.9700 13 8 4.8761 4.5786 -1.6366 14 6 3.1214 6.0178 -0.9894 15 16 3.9619 7.1798 -2.0935 16 6 2.9032 8.5786 -1.9290 17 1 2.0383 8.5283 -1.2841 18 6 3.1806 9.7451 -2.6282 19 7 4.2351 9.8066 -3.4138 20 14 2.0578 11.2278 -2.4544 21 1 0.9508 10.9034 -1.5191 22 1 2.8341 12.3771 -1.9236 23 1 1.4956 11.5813 -3.7826 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 3.8144 -0.8477 0.1845 28 1 6.2662 -0.7088 0.1821 29 1 7.3853 1.4736 -0.0040 30 1 6.0632 3.5357 -0.1843 31 1 2.5832 3.7681 0.2611 32 1 2.1055 5.8482 -1.3462 33 1 3.0881 6.4326 0.0180 34 1 4.4292 10.6219 -3.9021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035249130.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:38 Heat of formation + Delta-G solvation = -87.696724 kcal Electronic energy + Delta-G solvation = -20458.672005 eV Core-core repulsion = 17062.343860 eV Total energy + Delta-G solvation = -3396.328146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.10534 -39.85153 -38.25041 -36.70387 -34.54520 -32.44576 -31.71794 -30.65085 -28.55915 -27.82211 -25.51151 -24.17686 -23.07526 -21.26173 -20.33136 -18.20350 -17.97491 -17.51099 -17.01682 -16.61395 -16.45380 -15.40149 -15.20568 -14.81670 -14.52912 -14.45188 -13.93601 -13.72625 -13.57848 -13.30799 -12.84338 -12.61781 -12.51795 -12.15848 -12.04425 -11.67516 -11.07736 -11.06740 -11.03962 -10.79697 -10.75798 -10.29353 -9.84174 -9.58864 -9.18913 -9.08875 -8.28621 -8.23599 -6.53412 -6.23736 -3.94775 0.50036 1.18387 2.34586 2.45246 2.86547 2.91041 3.21286 3.26783 3.31676 3.59974 3.68407 4.18181 4.45511 4.67506 4.81890 4.84561 4.93789 4.96467 5.11890 5.12144 5.24368 5.27158 5.35247 5.58044 5.77473 5.83031 6.01408 6.02453 6.10075 6.13237 6.30655 6.42621 6.83216 7.46657 7.55550 7.59175 8.34028 8.36266 9.22029 10.83815 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.003548 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.728956 B = 7890.062410 C = 9009.510507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.516 3.484 4 O -0.511 6.511 5 C -0.174 4.174 6 C -0.042 4.042 7 C -0.160 4.160 8 C -0.058 4.058 9 C -0.139 4.139 10 C 0.233 3.767 11 N -0.672 5.672 12 C 0.533 3.467 13 O -0.495 6.495 14 C -0.153 4.153 15 S -0.057 6.057 16 C -0.535 4.535 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.920 3.080 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.280 1.280 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.138 0.862 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.147 0.853 31 H 0.422 0.578 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.532 -21.721 9.884 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.363 3.637 4 O -0.400 6.400 5 C -0.178 4.178 6 C -0.061 4.061 7 C -0.179 4.179 8 C -0.077 4.077 9 C -0.159 4.159 10 C 0.134 3.866 11 N -0.323 5.323 12 C 0.321 3.679 13 O -0.368 6.368 14 C -0.304 4.304 15 S 0.170 5.830 16 C -0.683 4.683 17 H 0.093 0.907 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.120 0.880 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.165 0.835 31 H 0.265 0.735 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.065 -21.433 8.648 23.136 hybrid contribution -2.546 1.180 1.021 2.986 sum -3.611 -20.253 9.669 22.732 Atomic orbital electron populations 1.23299 0.75814 1.03745 1.02873 1.86535 1.23668 1.32408 1.84428 1.21059 0.88788 0.81482 0.72411 1.90705 1.66767 1.35706 1.46840 1.18843 0.89002 0.93639 1.16348 1.21220 0.93840 0.96910 0.94145 1.21070 0.94191 0.98163 1.04429 1.21340 1.00495 0.91793 0.94026 1.21258 0.91499 1.00683 1.02462 1.17764 0.91214 0.84764 0.92838 1.44098 1.25794 1.13083 1.49304 1.20621 0.85055 0.84587 0.77650 1.90712 1.24739 1.81683 1.39643 1.23545 1.03933 0.95929 1.06945 1.85349 1.36042 1.06246 1.55407 1.22908 1.13774 0.98842 1.32826 0.90741 1.24995 0.95721 0.98412 0.94426 1.70027 1.25531 1.28037 1.26696 0.86097 0.79992 0.81152 0.78151 1.19572 1.20531 1.20543 0.87978 0.91713 0.91633 0.84380 0.85141 0.84902 0.83526 0.73469 0.88635 0.88617 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.35 -3.72 9.83 -40.62 -0.40 -4.12 16 3 C 0.52 6.67 7.88 34.46 0.27 6.94 16 4 O -0.51 -7.58 13.68 -19.28 -0.26 -7.85 16 5 C -0.17 -2.22 5.89 -104.83 -0.62 -2.83 16 6 C -0.04 -0.42 9.61 -39.19 -0.38 -0.80 16 7 C -0.16 -1.43 10.02 -39.62 -0.40 -1.83 16 8 C -0.06 -0.60 10.03 -39.54 -0.40 -1.00 16 9 C -0.14 -1.92 8.63 -39.44 -0.34 -2.26 16 10 C 0.23 3.43 6.26 -83.47 -0.52 2.90 16 11 N -0.67 -10.80 4.69 -9.68 -0.05 -10.85 16 12 C 0.53 10.37 7.57 -10.98 -0.08 10.29 16 13 O -0.50 -11.00 13.66 5.56 0.08 -10.92 16 14 C -0.15 -3.19 6.16 36.01 0.22 -2.96 16 15 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 16 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 17 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 20 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.14 1.05 7.62 -52.49 -0.40 0.65 16 28 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.15 2.26 6.54 -52.49 -0.34 1.92 16 31 H 0.42 6.29 6.31 -40.82 -0.26 6.04 16 32 H 0.10 1.89 8.14 -51.91 -0.42 1.47 16 33 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 317.52 15.07 4.78 4.78 Total: -1.00 -34.38 317.52 -6.83 -41.20 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -3.50 Total: 3.62 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.97 Total: -3.20 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.69 Total: -36.23 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.59 Total: -22.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.38 -6.83 -41.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035249130.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.494 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds