Wall clock time and date at job start Tue Mar 31 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34749 * 116.99512 * 2 1 4 4 O 1.21520 * 120.00677 * 0.02562 * 3 2 1 5 5 C 1.47390 * 119.99906 * 180.02562 * 3 2 1 6 6 C 1.39738 * 120.20171 * 355.04838 * 5 3 2 7 7 C 1.37776 * 119.91518 * 179.97438 * 6 5 3 8 8 C 1.38583 * 120.33932 * 359.97438 * 7 6 5 9 9 C 1.38016 * 120.41514 * 359.97438 * 8 7 6 10 10 C 1.38851 * 120.07463 * 0.03175 * 9 8 7 11 11 N 1.39261 * 120.16838 * 179.97438 * 10 9 8 12 12 C 1.34773 * 119.99692 * 34.93298 * 11 10 9 13 13 O 1.21273 * 120.00513 * 5.28041 * 12 11 10 14 14 C 1.50706 * 119.99930 * 185.27611 * 12 11 10 15 15 S 1.80994 * 109.47269 * 180.02562 * 14 12 11 16 16 C 1.76196 * 100.00189 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99737 * 359.97438 * 16 15 14 18 18 C 1.38796 * 120.00481 * 179.97438 * 16 15 14 19 19 N 1.31639 * 119.99786 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00593 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.46955 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47333 * 119.99732 * 20 18 16 23 23 H 1.48499 * 109.47185 * 240.00015 * 20 18 16 24 24 H 1.09000 * 109.46608 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46876 * 299.99223 * 1 2 3 26 26 H 1.08998 * 109.47361 * 60.00177 * 1 2 3 27 27 H 1.08002 * 120.04541 * 359.97082 * 6 5 3 28 28 H 1.08001 * 119.83417 * 179.97438 * 7 6 5 29 29 H 1.07998 * 119.79389 * 180.02562 * 8 7 6 30 30 H 1.07995 * 119.96528 * 179.74569 * 9 8 7 31 31 H 0.97004 * 120.00091 * 214.93345 * 11 10 9 32 32 H 1.09003 * 109.46913 * 300.00464 * 14 12 11 33 33 H 1.08996 * 109.46937 * 59.99995 * 14 12 11 34 34 H 0.96996 * 119.99818 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5356 1.2779 -0.0006 6 6 4.3007 0.1132 0.1031 7 6 5.6762 0.1922 0.1015 8 6 6.3066 1.4219 -0.0031 9 6 5.5645 2.5809 -0.1073 10 6 4.1772 2.5213 -0.1073 11 7 3.4265 3.6896 -0.2118 12 6 3.8717 4.7110 -0.9700 13 8 4.8761 4.5786 -1.6366 14 6 3.1214 6.0178 -0.9894 15 16 3.9619 7.1798 -2.0935 16 6 2.9032 8.5786 -1.9290 17 1 2.0383 8.5283 -1.2841 18 6 3.1806 9.7451 -2.6282 19 7 4.2351 9.8066 -3.4138 20 14 2.0578 11.2278 -2.4544 21 1 0.9508 10.9034 -1.5191 22 1 2.8341 12.3771 -1.9236 23 1 1.4956 11.5813 -3.7826 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 3.8144 -0.8477 0.1845 28 1 6.2662 -0.7088 0.1821 29 1 7.3853 1.4736 -0.0040 30 1 6.0632 3.5357 -0.1843 31 1 2.5832 3.7681 0.2611 32 1 2.1055 5.8482 -1.3462 33 1 3.0881 6.4326 0.0180 34 1 4.4292 10.6219 -3.9021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035249130.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:38 Heat of formation + Delta-G solvation = -110.076139 kcal Electronic energy + Delta-G solvation = -20459.642450 eV Core-core repulsion = 17062.343860 eV Total energy + Delta-G solvation = -3397.298590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.16437 -41.01636 -39.35717 -37.63918 -35.81781 -34.61802 -32.62324 -31.99086 -29.82104 -28.58096 -27.69489 -25.07122 -24.16805 -22.20477 -21.67330 -19.90749 -19.11527 -18.66722 -18.06329 -17.92517 -17.45800 -16.91131 -16.76848 -16.29085 -15.87288 -15.60463 -15.30354 -14.87786 -14.56284 -14.51236 -14.41827 -13.92529 -13.54638 -13.27929 -13.18990 -12.93311 -12.88558 -12.65659 -12.54743 -11.87037 -11.82264 -11.75087 -11.44138 -11.18394 -11.04274 -10.36216 -10.11745 -9.31018 -8.71472 -8.38229 -6.16958 -0.44421 0.24164 1.17504 1.39626 1.40279 1.41140 1.43688 1.55361 1.61372 2.06182 2.23204 2.74732 2.96212 3.22487 3.59334 3.71519 3.80991 4.07160 4.16238 4.27182 4.33242 4.34946 4.36846 4.37795 4.42924 4.71215 4.88789 5.08704 5.16854 5.23898 5.37752 5.39431 5.46121 5.87023 6.16992 6.22576 6.55897 6.93607 7.03309 8.71342 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.003548 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.728956 B = 7890.062410 C = 9009.510507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.348 6.348 3 C 0.514 3.486 4 O -0.538 6.538 5 C -0.182 4.182 6 C -0.034 4.034 7 C -0.140 4.140 8 C -0.053 4.053 9 C -0.160 4.160 10 C 0.195 3.805 11 N -0.659 5.659 12 C 0.537 3.463 13 O -0.531 6.531 14 C -0.131 4.131 15 S -0.134 6.134 16 C -0.550 4.550 17 H 0.081 0.919 18 C 0.016 3.984 19 N -0.909 5.909 20 Si 1.000 3.000 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 H 0.138 0.862 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.169 0.831 28 H 0.174 0.826 29 H 0.159 0.841 30 H 0.120 0.880 31 H 0.427 0.573 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 -24.013 11.115 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.362 3.638 4 O -0.430 6.430 5 C -0.185 4.185 6 C -0.052 4.052 7 C -0.159 4.159 8 C -0.072 4.072 9 C -0.181 4.181 10 C 0.098 3.902 11 N -0.310 5.310 12 C 0.324 3.676 13 O -0.407 6.407 14 C -0.282 4.282 15 S 0.093 5.907 16 C -0.698 4.698 17 H 0.099 0.901 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.821 3.179 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.198 1.198 24 H 0.156 0.844 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.186 0.814 28 H 0.191 0.809 29 H 0.177 0.823 30 H 0.138 0.862 31 H 0.270 0.730 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.952 -23.790 9.909 25.845 hybrid contribution -2.257 1.630 0.709 2.873 sum -4.210 -22.160 10.619 24.931 Atomic orbital electron populations 1.23614 0.74128 1.06058 1.02595 1.86522 1.25249 1.30867 1.83779 1.21198 0.88982 0.81804 0.71813 1.90682 1.67362 1.36735 1.48254 1.18999 0.89321 0.93764 1.16455 1.21644 0.94299 0.96953 0.92322 1.21563 0.94088 0.98875 1.01339 1.21693 1.01767 0.91214 0.92488 1.21223 0.91555 1.01079 1.04234 1.18008 0.91619 0.84778 0.95746 1.43772 1.25828 1.12963 1.48415 1.20285 0.84481 0.84869 0.77931 1.90693 1.26203 1.82299 1.41499 1.23362 1.03560 0.95250 1.06026 1.85444 1.38406 1.08670 1.58209 1.23240 1.13993 0.99361 1.33220 0.90057 1.26115 0.97315 1.01793 0.93688 1.70176 1.27520 1.29183 1.27691 0.84893 0.77857 0.76586 0.78525 1.18276 1.19653 1.19799 0.84357 0.91582 0.92410 0.81364 0.80854 0.82297 0.86218 0.72972 0.87534 0.86793 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.35 -6.56 9.83 -56.59 -0.56 -7.12 16 3 C 0.51 12.77 7.88 70.23 0.55 13.32 16 4 O -0.54 -15.95 13.68 19.77 0.27 -15.68 16 5 C -0.18 -4.39 5.89 -20.00 -0.12 -4.51 16 6 C -0.03 -0.55 9.61 22.52 0.22 -0.34 16 7 C -0.14 -1.93 10.02 22.24 0.22 -1.71 16 8 C -0.05 -0.99 10.03 22.30 0.22 -0.77 16 9 C -0.16 -4.50 8.63 22.36 0.19 -4.30 16 10 C 0.20 5.80 6.26 38.62 0.24 6.04 16 11 N -0.66 -21.83 4.69 -302.93 -1.42 -23.25 16 12 C 0.54 21.77 7.57 87.66 0.66 22.44 16 13 O -0.53 -24.91 13.66 -3.01 -0.04 -24.95 16 14 C -0.13 -5.61 6.16 71.24 0.44 -5.17 16 15 S -0.13 -7.59 20.57 -56.49 -1.16 -8.75 16 16 C -0.55 -32.06 9.50 67.95 0.65 -31.42 16 17 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 18 C 0.02 0.91 5.49 84.86 0.47 1.38 16 19 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 20 Si 1.00 44.19 29.55 68.60 2.03 46.22 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.17 1.74 7.62 -2.91 -0.02 1.72 16 28 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 29 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.12 3.97 6.54 -2.91 -0.02 3.95 16 31 H 0.43 13.03 6.31 -92.71 -0.59 12.45 16 32 H 0.11 4.29 8.14 -2.39 -0.02 4.28 16 33 H 0.11 4.41 8.14 -2.40 -0.02 4.39 16 34 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -78.11 317.52 4.91 -73.21 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.56 Total: 19.55 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 4.94 Total: -3.46 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -1.13 Total: -79.01 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -0.33 Total: -47.75 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -7.59 SS G_CDS: -1.16 Total: -8.75 kcal Total: -78.11 4.91 -73.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035249130.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.868 kcal (2) G-P(sol) polarization free energy of solvation -78.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds