Wall clock time and date at job start Tue Mar 31 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34741 * 116.99893 * 2 1 4 4 O 1.21508 * 120.00326 * 359.97438 * 3 2 1 5 5 C 1.47467 * 119.99823 * 179.97438 * 3 2 1 6 6 C 1.39811 * 120.07862 * 0.25359 * 5 3 2 7 7 C 1.37643 * 119.91927 * 180.25049 * 6 5 3 8 8 C 1.39156 * 120.07823 * 359.49263 * 7 6 5 9 9 N 1.39410 * 119.91985 * 180.27150 * 8 7 6 10 10 C 1.34780 * 119.99722 * 144.85132 * 9 8 7 11 11 O 1.21276 * 119.99800 * 4.58173 * 10 9 8 12 12 C 1.50700 * 119.99707 * 184.58476 * 10 9 8 13 13 S 1.81001 * 109.46762 * 179.97438 * 12 10 9 14 14 C 1.76202 * 100.00078 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99547 * 0.02562 * 14 13 12 16 16 C 1.38796 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.31632 * 119.99924 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00033 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46940 * 60.00061 * 18 16 14 20 20 H 1.48496 * 109.47183 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47112 * 300.00202 * 18 16 14 22 22 C 1.39143 * 120.15543 * 0.25983 * 8 7 6 23 23 C 1.37648 * 120.08444 * 359.97438 * 22 8 7 24 24 H 1.08995 * 109.47097 * 299.99712 * 1 2 3 25 25 H 1.08997 * 109.47179 * 60.00386 * 1 2 3 26 26 H 1.09004 * 109.47346 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.03691 * 0.02562 * 6 5 3 28 28 H 1.07995 * 119.96333 * 179.76828 * 7 6 5 29 29 H 0.96996 * 120.00352 * 324.85216 * 9 8 7 30 30 H 1.08998 * 109.47369 * 299.99697 * 12 10 9 31 31 H 1.08997 * 109.47476 * 60.00208 * 12 10 9 32 32 H 0.97005 * 119.99575 * 180.02562 * 17 16 14 33 33 H 1.08008 * 119.95781 * 180.02562 * 22 8 7 34 34 H 1.07998 * 120.03924 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5363 1.2777 0.0006 6 6 4.2994 0.1062 -0.0042 7 6 5.6737 0.1820 0.0015 8 6 6.3038 1.4228 0.0015 9 7 7.6960 1.4957 0.0016 10 6 8.3190 2.4840 -0.6704 11 8 7.6690 3.3568 -1.2056 12 6 9.8234 2.5044 -0.7568 13 16 10.3530 3.9437 -1.7181 14 6 12.1004 3.7246 -1.6596 15 1 12.5215 2.8814 -1.1322 16 6 12.9356 4.6355 -2.2914 17 7 12.4223 5.6634 -2.9338 18 14 14.7880 4.4028 -2.2301 19 1 15.1440 3.1006 -2.8488 20 1 15.4501 5.5024 -2.9767 21 1 15.2425 4.4198 -0.8165 22 6 5.5475 2.5908 0.0010 23 6 4.1727 2.5226 0.0001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.8110 -0.8570 -0.0088 28 1 6.2638 -0.7224 0.0016 29 1 8.2162 0.8353 0.4853 30 1 10.2442 2.5626 0.2470 31 1 10.1717 1.5940 -1.2446 32 1 13.0060 6.2998 -3.3756 33 1 6.0398 3.5521 0.0006 34 1 3.5864 3.4296 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035249132.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:40 Heat of formation + Delta-G solvation = -91.854401 kcal Electronic energy + Delta-G solvation = -19714.576209 eV Core-core repulsion = 16318.067773 eV Total energy + Delta-G solvation = -3396.508436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.86230 -40.21281 -38.26603 -36.60956 -34.79079 -32.50091 -31.30018 -30.98146 -29.07529 -27.63580 -25.57476 -23.99163 -23.10177 -21.25068 -20.50640 -18.43460 -17.97827 -17.59450 -17.16526 -16.58123 -16.53857 -15.48182 -14.95997 -14.86779 -14.53274 -14.38200 -13.94336 -13.73550 -13.61431 -13.48230 -12.96321 -12.79337 -12.61065 -12.38099 -12.14347 -11.44162 -11.12446 -11.08883 -11.06987 -10.84613 -10.76446 -10.44367 -9.92492 -9.65379 -9.16466 -9.12749 -8.36562 -8.34991 -6.60450 -6.28705 -4.01041 0.48641 1.22064 2.28213 2.46311 2.73890 2.84454 3.19247 3.21457 3.25158 3.49009 3.65067 4.12722 4.49454 4.66676 4.75082 4.81907 4.87808 4.89097 5.06747 5.10745 5.18643 5.28671 5.35394 5.53412 5.70196 5.80998 5.89133 5.97286 6.07045 6.14089 6.20120 6.35120 6.79535 7.30179 7.52390 7.53855 8.22263 8.27707 9.16565 10.78593 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.056150 B = 0.002448 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.541883 B =11433.713976 C =11793.569198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.512 3.488 4 O -0.510 6.510 5 C -0.159 4.159 6 C -0.040 4.040 7 C -0.167 4.167 8 C 0.198 3.802 9 N -0.680 5.680 10 C 0.532 3.468 11 O -0.490 6.490 12 C -0.155 4.155 13 S -0.056 6.056 14 C -0.538 4.538 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.920 3.080 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.273 1.273 22 C -0.138 4.138 23 C -0.030 4.030 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.413 0.587 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.270 0.730 33 H 0.153 0.847 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.056 -14.592 8.410 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.358 3.642 4 O -0.399 6.399 5 C -0.161 4.161 6 C -0.059 4.059 7 C -0.188 4.188 8 C 0.101 3.899 9 N -0.326 5.326 10 C 0.320 3.680 11 O -0.361 6.361 12 C -0.305 4.305 13 S 0.171 5.829 14 C -0.687 4.687 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.746 3.254 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.158 4.158 23 C -0.049 4.049 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.157 0.843 28 H 0.153 0.847 29 H 0.250 0.750 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.171 0.829 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.236 -12.650 7.368 23.385 hybrid contribution 2.013 -1.477 0.831 2.631 sum -16.223 -14.127 8.199 23.022 Atomic orbital electron populations 1.23266 0.76099 1.03667 1.02661 1.86542 1.23476 1.32858 1.84549 1.21192 0.89181 0.81314 0.72493 1.90842 1.66858 1.36001 1.46232 1.19009 0.88710 0.95096 1.13265 1.21164 0.92947 0.97843 0.93955 1.20893 0.94710 0.96363 1.06811 1.18132 0.83408 0.93929 0.94383 1.43713 1.04427 1.31959 1.52528 1.20635 0.90463 0.80253 0.76697 1.90720 1.66762 1.35228 1.43423 1.23555 0.92093 1.08250 1.06593 1.85446 1.05396 1.25831 1.66235 1.22804 0.90905 1.14492 1.40450 0.90830 1.25002 0.99727 0.94400 0.94413 1.70001 1.35972 1.12312 1.31869 0.86200 0.82695 0.78036 0.78441 1.19895 1.20770 1.19885 1.21381 0.92967 0.99313 1.02169 1.21170 0.94049 0.96684 0.92978 0.91862 0.91813 0.88030 0.84267 0.84737 0.75035 0.88613 0.88617 0.92010 0.82929 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.36 -3.56 9.81 -40.60 -0.40 -3.96 16 3 C 0.51 6.25 7.89 34.49 0.27 6.52 16 4 O -0.51 -7.45 16.13 -19.27 -0.31 -7.76 16 5 C -0.16 -1.87 5.88 -104.96 -0.62 -2.49 16 6 C -0.04 -0.39 9.60 -39.21 -0.38 -0.77 16 7 C -0.17 -1.63 9.94 -39.46 -0.39 -2.02 16 8 C 0.20 2.45 6.30 -83.74 -0.53 1.93 16 9 N -0.68 -8.32 5.31 -9.86 -0.05 -8.37 16 10 C 0.53 9.02 7.68 -10.98 -0.08 8.94 16 11 O -0.49 -10.13 13.28 5.56 0.07 -10.06 16 12 C -0.15 -2.84 6.16 36.01 0.22 -2.62 16 13 S -0.06 -1.43 20.57 -107.50 -2.21 -3.65 16 14 C -0.54 -14.78 9.50 30.94 0.29 -14.48 16 15 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 16 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 17 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 18 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 C -0.14 -1.90 8.67 -39.46 -0.34 -2.24 16 23 C -0.03 -0.38 9.58 -39.21 -0.38 -0.76 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.14 1.04 7.60 -52.49 -0.40 0.64 16 28 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.41 3.51 8.82 -40.82 -0.36 3.15 16 30 H 0.10 1.59 8.14 -51.92 -0.42 1.16 16 31 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.15 2.38 6.21 -52.48 -0.33 2.05 16 34 H 0.14 1.72 7.64 -52.49 -0.40 1.32 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -34.39 321.59 -6.86 -41.25 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -3.57 Total: 1.38 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -0.96 Total: -4.70 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.68 Total: -33.18 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.64 Total: -21.78 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.65 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.39 -6.86 -41.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035249132.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.600 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds