Wall clock time and date at job start Tue Mar 31 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34741 * 116.99893 * 2 1 4 4 O 1.21508 * 120.00326 * 359.97438 * 3 2 1 5 5 C 1.47467 * 119.99823 * 179.97438 * 3 2 1 6 6 C 1.39811 * 120.07862 * 0.25359 * 5 3 2 7 7 C 1.37643 * 119.91927 * 180.25049 * 6 5 3 8 8 C 1.39156 * 120.07823 * 359.49263 * 7 6 5 9 9 N 1.39410 * 119.91985 * 180.27150 * 8 7 6 10 10 C 1.34780 * 119.99722 * 144.85132 * 9 8 7 11 11 O 1.21276 * 119.99800 * 4.58173 * 10 9 8 12 12 C 1.50700 * 119.99707 * 184.58476 * 10 9 8 13 13 S 1.81001 * 109.46762 * 179.97438 * 12 10 9 14 14 C 1.76202 * 100.00078 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99547 * 0.02562 * 14 13 12 16 16 C 1.38796 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.31632 * 119.99924 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00033 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46940 * 60.00061 * 18 16 14 20 20 H 1.48496 * 109.47183 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47112 * 300.00202 * 18 16 14 22 22 C 1.39143 * 120.15543 * 0.25983 * 8 7 6 23 23 C 1.37648 * 120.08444 * 359.97438 * 22 8 7 24 24 H 1.08995 * 109.47097 * 299.99712 * 1 2 3 25 25 H 1.08997 * 109.47179 * 60.00386 * 1 2 3 26 26 H 1.09004 * 109.47346 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.03691 * 0.02562 * 6 5 3 28 28 H 1.07995 * 119.96333 * 179.76828 * 7 6 5 29 29 H 0.96996 * 120.00352 * 324.85216 * 9 8 7 30 30 H 1.08998 * 109.47369 * 299.99697 * 12 10 9 31 31 H 1.08997 * 109.47476 * 60.00208 * 12 10 9 32 32 H 0.97005 * 119.99575 * 180.02562 * 17 16 14 33 33 H 1.08008 * 119.95781 * 180.02562 * 22 8 7 34 34 H 1.07998 * 120.03924 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5363 1.2777 0.0006 6 6 4.2994 0.1062 -0.0042 7 6 5.6737 0.1820 0.0015 8 6 6.3038 1.4228 0.0015 9 7 7.6960 1.4957 0.0016 10 6 8.3190 2.4840 -0.6704 11 8 7.6690 3.3568 -1.2056 12 6 9.8234 2.5044 -0.7568 13 16 10.3530 3.9437 -1.7181 14 6 12.1004 3.7246 -1.6596 15 1 12.5215 2.8814 -1.1322 16 6 12.9356 4.6355 -2.2914 17 7 12.4223 5.6634 -2.9338 18 14 14.7880 4.4028 -2.2301 19 1 15.1440 3.1006 -2.8488 20 1 15.4501 5.5024 -2.9767 21 1 15.2425 4.4198 -0.8165 22 6 5.5475 2.5908 0.0010 23 6 4.1727 2.5226 0.0001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.8110 -0.8570 -0.0088 28 1 6.2638 -0.7224 0.0016 29 1 8.2162 0.8353 0.4853 30 1 10.2442 2.5626 0.2470 31 1 10.1717 1.5940 -1.2446 32 1 13.0060 6.2998 -3.3756 33 1 6.0398 3.5521 0.0006 34 1 3.5864 3.4296 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035249132.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:40 Heat of formation + Delta-G solvation = -114.700217 kcal Electronic energy + Delta-G solvation = -19715.566878 eV Core-core repulsion = 16318.067773 eV Total energy + Delta-G solvation = -3397.499105 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.85845 -41.28034 -39.33756 -37.51196 -35.95521 -34.58208 -32.31454 -32.04399 -30.26630 -28.37705 -27.65279 -24.97913 -24.03891 -22.24304 -21.64721 -19.94111 -19.18810 -18.70903 -18.13964 -17.87783 -17.39106 -16.87390 -16.72818 -16.15630 -15.84963 -15.44711 -15.14090 -14.79616 -14.56525 -14.52624 -14.39818 -13.96355 -13.70164 -13.45944 -13.17274 -13.02480 -12.86107 -12.63816 -12.35720 -11.82352 -11.77195 -11.73218 -11.55130 -11.12414 -10.98411 -10.29309 -10.07765 -9.36425 -8.67393 -8.34665 -6.12969 -0.47353 0.33131 1.20905 1.23806 1.44784 1.44932 1.54748 1.62405 1.67489 2.08416 2.26987 2.72574 3.00016 3.27010 3.64502 3.75677 3.90231 3.91971 4.22358 4.27012 4.32425 4.34459 4.34949 4.46478 4.53518 4.71612 4.92917 5.03250 5.18909 5.23745 5.24733 5.38437 5.42498 5.81956 6.19782 6.28291 6.64407 7.01965 7.07090 8.74055 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.056150 B = 0.002448 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.541883 B =11433.713976 C =11793.569198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.514 3.486 4 O -0.543 6.543 5 C -0.165 4.165 6 C -0.027 4.027 7 C -0.146 4.146 8 C 0.182 3.818 9 N -0.655 5.655 10 C 0.535 3.465 11 O -0.536 6.536 12 C -0.128 4.128 13 S -0.150 6.150 14 C -0.545 4.545 15 H 0.087 0.913 16 C 0.012 3.988 17 N -0.912 5.912 18 Si 0.998 3.002 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.261 1.261 22 C -0.157 4.157 23 C -0.042 4.042 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.138 0.862 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.435 0.565 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.271 0.729 33 H 0.125 0.875 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.628 -18.414 9.531 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.361 3.639 4 O -0.435 6.435 5 C -0.167 4.167 6 C -0.046 4.046 7 C -0.166 4.166 8 C 0.086 3.914 9 N -0.302 5.302 10 C 0.323 3.677 11 O -0.411 6.411 12 C -0.279 4.279 13 S 0.077 5.923 14 C -0.693 4.693 15 H 0.105 0.895 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.186 1.186 20 H -0.207 1.207 21 H -0.186 1.186 22 C -0.177 4.177 23 C -0.061 4.061 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.156 0.844 27 H 0.190 0.810 28 H 0.193 0.807 29 H 0.275 0.725 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.080 0.920 33 H 0.142 0.858 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.824 -16.544 8.530 25.771 hybrid contribution 1.676 -0.413 0.548 1.811 sum -16.148 -16.956 9.079 25.114 Atomic orbital electron populations 1.23603 0.74289 1.06034 1.02523 1.86524 1.25194 1.31271 1.83864 1.21285 0.89324 0.81542 0.71718 1.90829 1.67566 1.37234 1.47883 1.19136 0.88938 0.95430 1.13212 1.21530 0.92885 0.98227 0.91957 1.21247 0.94876 0.96333 1.04171 1.18283 0.83022 0.94575 0.95560 1.43276 1.04655 1.30902 1.51370 1.20363 0.89799 0.80682 0.76857 1.90728 1.67333 1.37292 1.45748 1.23365 0.93257 1.04940 1.06382 1.85650 1.06383 1.31478 1.68821 1.23176 0.91130 1.14791 1.40216 0.89527 1.26132 1.05329 0.93934 0.93848 1.70178 1.37893 1.13539 1.33207 0.85007 0.75779 0.78278 0.78972 1.18570 1.20703 1.18597 1.21208 0.93523 0.99095 1.03872 1.21094 0.93715 0.97319 0.93933 0.91915 0.92167 0.84382 0.81000 0.80722 0.72481 0.86261 0.86226 0.92039 0.85752 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.35 -6.21 9.81 -56.52 -0.55 -6.76 16 3 C 0.51 12.08 7.89 70.25 0.55 12.64 16 4 O -0.54 -16.07 16.13 19.81 0.32 -15.75 16 5 C -0.17 -3.70 5.88 -20.09 -0.12 -3.82 16 6 C -0.03 -0.44 9.60 22.51 0.22 -0.22 16 7 C -0.15 -2.27 9.94 22.35 0.22 -2.05 16 8 C 0.18 4.18 6.30 38.37 0.24 4.42 16 9 N -0.65 -14.58 5.31 -303.49 -1.61 -16.19 16 10 C 0.54 17.87 7.68 87.66 0.67 18.54 16 11 O -0.54 -22.99 13.28 -3.02 -0.04 -23.03 16 12 C -0.13 -4.57 6.16 71.24 0.44 -4.13 16 13 S -0.15 -7.97 20.57 -56.49 -1.16 -9.14 16 14 C -0.55 -29.95 9.50 67.95 0.65 -29.30 16 15 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 16 C 0.01 0.69 5.49 84.86 0.47 1.15 16 17 N -0.91 -55.12 13.22 21.65 0.29 -54.84 16 18 Si 1.00 42.45 29.55 68.60 2.03 44.48 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 22 C -0.16 -4.44 8.67 22.35 0.19 -4.25 16 23 C -0.04 -1.10 9.58 22.51 0.22 -0.88 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.14 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.17 1.67 7.60 -2.91 -0.02 1.65 16 28 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 29 H 0.43 5.74 8.82 -92.71 -0.82 4.92 16 30 H 0.12 3.69 8.14 -2.40 -0.02 3.67 16 31 H 0.12 3.71 8.14 -2.40 -0.02 3.69 16 32 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 33 H 0.12 4.23 6.21 -2.91 -0.02 4.21 16 34 H 0.13 3.53 7.64 -2.91 -0.02 3.51 16 Total: -1.00 -78.96 321.59 4.54 -74.42 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.33 Total: 13.16 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 4.95 Total: -6.36 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.33 Total: -71.03 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.27 Total: -45.55 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.14 kcal Total: -78.96 4.54 -74.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035249132.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.279 kcal (2) G-P(sol) polarization free energy of solvation -78.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds