Wall clock time and date at job start Tue Mar 31 2020 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99786 * 2 1 4 4 O 1.21277 * 119.99871 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.00041 * 359.97438 * 3 2 1 6 6 S 1.80995 * 109.46963 * 180.02562 * 5 3 2 7 7 C 1.76197 * 99.99938 * 180.02562 * 6 5 3 8 8 H 1.07997 * 120.00169 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00225 * 180.02562 * 7 6 5 10 10 N 1.31636 * 119.99676 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00161 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47419 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46964 * 119.99769 * 11 9 7 14 14 H 1.48496 * 109.47526 * 239.99979 * 11 9 7 15 15 C 1.39250 * 120.00175 * 179.97438 * 2 1 3 16 16 C 1.38852 * 120.16776 * 89.99845 * 15 2 1 17 17 C 1.38022 * 120.07461 * 179.97438 * 16 15 2 18 18 C 1.38575 * 120.41731 * 0.02562 * 17 16 15 19 19 C 1.37775 * 120.33944 * 359.97438 * 18 17 16 20 20 C 1.39744 * 119.91728 * 359.97438 * 19 18 17 21 21 C 1.47387 * 120.20926 * 179.97438 * 20 19 18 22 22 O 1.21504 * 120.00192 * 180.02562 * 21 20 19 23 23 O 1.34756 * 119.99530 * 0.02562 * 21 20 19 24 24 H 1.09003 * 109.47351 * 270.00369 * 1 2 3 25 25 H 1.08999 * 109.47096 * 30.00413 * 1 2 3 26 26 H 1.09005 * 109.46999 * 150.00044 * 1 2 3 27 27 H 1.08995 * 109.46706 * 299.99992 * 5 3 2 28 28 H 1.09003 * 109.46853 * 60.00149 * 5 3 2 29 29 H 0.96998 * 119.99862 * 180.02562 * 10 9 7 30 30 H 1.07999 * 119.96249 * 359.95863 * 16 15 2 31 31 H 1.07992 * 119.78775 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.83253 * 180.02562 * 18 17 16 33 33 H 1.08008 * 120.04477 * 179.72133 * 19 18 17 34 34 H 0.96704 * 116.99632 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4724 -0.0006 6 16 2.5615 3.8481 -0.0012 7 6 1.4414 5.2082 -0.0010 8 1 0.3761 5.0305 -0.0011 9 6 1.9281 6.5082 -0.0019 10 7 3.2265 6.7248 -0.0024 11 14 0.7406 7.9501 -0.0025 12 1 -0.6549 7.4422 -0.0012 13 1 0.9666 8.7778 1.2095 14 1 0.9659 8.7765 -1.2155 15 6 2.1613 -1.2059 0.0005 16 6 2.5102 -1.8108 -1.1996 17 6 3.2008 -3.0058 -1.1969 18 6 3.5507 -3.6111 -0.0004 19 6 3.2132 -3.0260 1.2004 20 6 2.5149 -1.8156 1.2140 21 6 2.1501 -1.1843 2.4949 22 8 1.5426 -0.1321 2.5023 23 8 2.4905 -1.7741 3.6577 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.7590 2.5298 -0.8908 28 1 0.7583 2.5303 0.8892 29 1 3.5666 7.6331 -0.0027 30 1 2.2406 -1.3457 -2.1364 31 1 3.4702 -3.4719 -2.1330 32 1 4.0914 -4.5460 -0.0093 33 1 3.4843 -3.5042 2.1301 34 1 2.2298 -1.3222 4.4719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037435854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:40 Heat of formation + Delta-G solvation = -81.112282 kcal Electronic energy + Delta-G solvation = -21080.920070 eV Core-core repulsion = 17684.877447 eV Total energy + Delta-G solvation = -3396.042623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.92263 -39.43204 -38.25456 -36.13497 -35.17125 -32.39071 -31.63199 -31.02411 -28.61801 -26.61090 -25.46916 -24.68869 -22.90261 -21.56659 -19.53552 -18.17916 -17.70148 -17.47821 -16.82600 -16.17791 -15.93145 -15.55299 -15.13046 -14.77269 -14.57949 -14.37838 -13.92133 -13.37042 -13.13920 -12.97043 -12.75843 -12.60241 -12.37643 -12.14810 -11.85877 -11.62424 -11.53135 -11.04334 -10.97839 -10.73178 -10.57311 -9.78186 -9.45036 -9.27856 -9.03688 -9.02450 -8.67855 -8.17511 -6.45304 -6.18045 -3.87882 0.48644 1.04810 2.49401 2.86862 2.94229 3.10855 3.24027 3.28154 3.33589 3.53122 3.63593 4.23845 4.59515 4.71422 4.80289 5.01276 5.12050 5.14332 5.17079 5.23560 5.36124 5.49185 5.65163 5.66892 5.80021 5.91819 5.96430 6.13901 6.20400 6.22814 6.38783 6.43253 6.92996 7.45751 7.63766 7.86231 8.39400 8.58955 9.27249 10.89561 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.003893 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.562413 B = 7191.236034 C = 7505.480205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.583 5.583 3 C 0.550 3.450 4 O -0.511 6.511 5 C -0.144 4.144 6 S -0.063 6.063 7 C -0.532 4.532 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.868 5.868 11 Si 0.919 3.081 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.218 3.782 16 C -0.124 4.124 17 C -0.076 4.076 18 C -0.135 4.135 19 C -0.058 4.058 20 C -0.126 4.126 21 C 0.521 3.479 22 O -0.489 6.489 23 O -0.517 6.517 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.267 0.733 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -22.767 1.020 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.316 5.316 3 C 0.339 3.661 4 O -0.383 6.383 5 C -0.295 4.295 6 S 0.164 5.836 7 C -0.681 4.681 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.504 5.504 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.126 3.874 16 C -0.143 4.143 17 C -0.095 4.095 18 C -0.153 4.153 19 C -0.076 4.076 20 C -0.129 4.129 21 C 0.364 3.636 22 O -0.376 6.376 23 O -0.330 6.330 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.800 -22.480 0.661 22.663 hybrid contribution -2.343 1.240 0.638 2.726 sum -5.143 -21.240 1.299 21.892 Atomic orbital electron populations 1.21810 0.78054 1.02989 1.02618 1.45180 1.07046 1.03127 1.76285 1.20323 0.87755 0.83950 0.74038 1.90700 1.13776 1.86578 1.47286 1.23509 1.04516 0.96524 1.04909 1.85378 1.08169 0.93337 1.96698 1.22904 0.94359 0.92158 1.58639 0.90866 1.24993 0.95667 0.98354 0.94597 1.70037 1.11735 1.21488 1.47102 0.86112 0.80378 0.81117 0.77861 1.19599 1.20594 1.20582 1.17467 0.92585 0.86168 0.91169 1.21409 0.99422 0.95959 0.97500 1.21319 0.95180 0.94231 0.98722 1.21173 1.01236 1.00907 0.91979 1.21380 0.94088 0.92891 0.99277 1.19435 1.05586 0.97727 0.90131 1.20677 0.76303 0.82499 0.84125 1.90947 1.37275 1.21629 1.87768 1.84523 1.76138 1.55306 1.17001 0.91865 0.90077 0.91561 0.89243 0.88759 0.92291 0.84634 0.84871 0.84905 0.84205 0.72763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 9.88 59.85 0.59 1.68 16 2 N -0.58 -9.52 1.52 -120.59 -0.18 -9.70 16 3 C 0.55 11.55 6.74 -10.98 -0.07 11.48 16 4 O -0.51 -12.63 15.83 5.56 0.09 -12.55 16 5 C -0.14 -3.17 4.71 36.01 0.17 -3.00 16 6 S -0.06 -1.77 20.57 -107.50 -2.21 -3.99 16 7 C -0.53 -15.58 9.50 30.94 0.29 -15.28 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 10 N -0.87 -26.68 13.22 55.49 0.73 -25.95 16 11 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 C 0.22 3.20 4.44 -83.48 -0.37 2.83 16 16 C -0.12 -1.48 9.96 -39.43 -0.39 -1.87 16 17 C -0.08 -0.69 10.03 -39.54 -0.40 -1.09 16 18 C -0.13 -1.16 10.02 -39.63 -0.40 -1.56 16 19 C -0.06 -0.60 9.61 -39.19 -0.38 -0.98 16 20 C -0.13 -1.74 5.89 -104.83 -0.62 -2.35 16 21 C 0.52 7.58 8.26 34.45 0.28 7.86 16 22 O -0.49 -8.67 13.90 -19.27 -0.27 -8.93 16 23 O -0.52 -5.50 12.68 -40.65 -0.52 -6.02 16 24 H 0.06 0.82 7.18 -51.93 -0.37 0.44 16 25 H 0.08 0.96 6.44 -51.93 -0.33 0.63 16 26 H 0.07 0.63 8.05 -51.93 -0.42 0.22 16 27 H 0.09 1.77 7.40 -51.92 -0.38 1.38 16 28 H 0.09 2.01 8.11 -51.92 -0.42 1.59 16 29 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.14 1.17 7.61 -52.48 -0.40 0.78 16 34 H 0.41 2.72 9.11 45.56 0.42 3.14 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -38.37 317.31 -6.71 -45.07 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -2.73 Total: 0.75 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -1.38 Total: -0.25 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.55 Total: -35.65 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.70 Total: -27.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -38.37 -6.71 -45.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037435854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.040 kcal (2) G-P(sol) polarization free energy of solvation -38.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds