Wall clock time and date at job start Tue Mar 31 2020 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99786 * 2 1 4 4 O 1.21277 * 119.99871 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.00041 * 359.97438 * 3 2 1 6 6 S 1.80995 * 109.46963 * 180.02562 * 5 3 2 7 7 C 1.76197 * 99.99938 * 180.02562 * 6 5 3 8 8 H 1.07997 * 120.00169 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00225 * 180.02562 * 7 6 5 10 10 N 1.31636 * 119.99676 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00161 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47419 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46964 * 119.99769 * 11 9 7 14 14 H 1.48496 * 109.47526 * 239.99979 * 11 9 7 15 15 C 1.39250 * 120.00175 * 179.97438 * 2 1 3 16 16 C 1.38852 * 120.16776 * 89.99845 * 15 2 1 17 17 C 1.38022 * 120.07461 * 179.97438 * 16 15 2 18 18 C 1.38575 * 120.41731 * 0.02562 * 17 16 15 19 19 C 1.37775 * 120.33944 * 359.97438 * 18 17 16 20 20 C 1.39744 * 119.91728 * 359.97438 * 19 18 17 21 21 C 1.47387 * 120.20926 * 179.97438 * 20 19 18 22 22 O 1.21504 * 120.00192 * 180.02562 * 21 20 19 23 23 O 1.34756 * 119.99530 * 0.02562 * 21 20 19 24 24 H 1.09003 * 109.47351 * 270.00369 * 1 2 3 25 25 H 1.08999 * 109.47096 * 30.00413 * 1 2 3 26 26 H 1.09005 * 109.46999 * 150.00044 * 1 2 3 27 27 H 1.08995 * 109.46706 * 299.99992 * 5 3 2 28 28 H 1.09003 * 109.46853 * 60.00149 * 5 3 2 29 29 H 0.96998 * 119.99862 * 180.02562 * 10 9 7 30 30 H 1.07999 * 119.96249 * 359.95863 * 16 15 2 31 31 H 1.07992 * 119.78775 * 180.02562 * 17 16 15 32 32 H 1.08000 * 119.83253 * 180.02562 * 18 17 16 33 33 H 1.08008 * 120.04477 * 179.72133 * 19 18 17 34 34 H 0.96704 * 116.99632 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4724 -0.0006 6 16 2.5615 3.8481 -0.0012 7 6 1.4414 5.2082 -0.0010 8 1 0.3761 5.0305 -0.0011 9 6 1.9281 6.5082 -0.0019 10 7 3.2265 6.7248 -0.0024 11 14 0.7406 7.9501 -0.0025 12 1 -0.6549 7.4422 -0.0012 13 1 0.9666 8.7778 1.2095 14 1 0.9659 8.7765 -1.2155 15 6 2.1613 -1.2059 0.0005 16 6 2.5102 -1.8108 -1.1996 17 6 3.2008 -3.0058 -1.1969 18 6 3.5507 -3.6111 -0.0004 19 6 3.2132 -3.0260 1.2004 20 6 2.5149 -1.8156 1.2140 21 6 2.1501 -1.1843 2.4949 22 8 1.5426 -0.1321 2.5023 23 8 2.4905 -1.7741 3.6577 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.7590 2.5298 -0.8908 28 1 0.7583 2.5303 0.8892 29 1 3.5666 7.6331 -0.0027 30 1 2.2406 -1.3457 -2.1364 31 1 3.4702 -3.4719 -2.1330 32 1 4.0914 -4.5460 -0.0093 33 1 3.4843 -3.5042 2.1301 34 1 2.2298 -1.3222 4.4719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037435854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:40 Heat of formation + Delta-G solvation = -107.751407 kcal Electronic energy + Delta-G solvation = -21082.075229 eV Core-core repulsion = 17684.877447 eV Total energy + Delta-G solvation = -3397.197782 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03332 -40.66681 -39.34318 -37.21770 -36.45834 -34.60855 -32.50049 -32.20427 -30.06331 -27.76839 -27.65754 -25.67766 -23.89453 -22.60334 -20.82957 -19.67120 -19.15435 -18.67354 -18.06431 -17.52966 -17.11934 -16.90550 -16.64884 -16.25420 -15.84988 -15.69641 -15.24713 -14.66960 -14.48983 -14.35854 -14.11064 -13.65562 -13.61655 -13.37071 -13.18352 -12.95970 -12.91719 -12.63269 -12.58969 -12.42780 -11.74455 -11.68146 -11.17568 -11.06887 -10.32352 -10.12759 -9.96025 -9.91112 -8.71039 -8.36773 -6.15913 -0.43181 0.20521 1.21295 1.40386 1.41770 1.48699 1.51424 1.56357 1.96781 2.07160 2.24995 2.67266 2.97258 3.23659 3.71511 3.77994 4.02755 4.04692 4.09863 4.19863 4.33476 4.37669 4.41027 4.53845 4.59050 4.80234 4.88043 5.17152 5.31153 5.38238 5.39526 5.51811 5.54710 5.89393 6.07182 6.18132 6.90894 7.03939 7.06921 8.73124 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.003893 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.562413 B = 7191.236034 C = 7505.480205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.568 5.568 3 C 0.548 3.452 4 O -0.560 6.560 5 C -0.118 4.118 6 S -0.149 6.149 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.014 3.986 10 N -0.911 5.911 11 Si 1.002 2.998 12 H -0.257 1.257 13 H -0.273 1.273 14 H -0.270 1.270 15 C 0.177 3.823 16 C -0.135 4.135 17 C -0.064 4.064 18 C -0.122 4.122 19 C -0.055 4.055 20 C -0.155 4.155 21 C 0.519 3.481 22 O -0.535 6.535 23 O -0.504 6.504 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.272 0.728 30 H 0.139 0.861 31 H 0.171 0.829 32 H 0.175 0.825 33 H 0.160 0.840 34 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -24.912 0.450 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.298 5.298 3 C 0.338 3.662 4 O -0.438 6.438 5 C -0.269 4.269 6 S 0.078 5.922 7 C -0.694 4.694 8 H 0.100 0.900 9 C -0.191 4.191 10 N -0.548 5.548 11 Si 0.823 3.177 12 H -0.181 1.181 13 H -0.199 1.199 14 H -0.196 1.196 15 C 0.086 3.914 16 C -0.154 4.154 17 C -0.083 4.083 18 C -0.139 4.139 19 C -0.073 4.073 20 C -0.157 4.157 21 C 0.364 3.636 22 O -0.426 6.426 23 O -0.318 6.318 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.157 0.843 31 H 0.188 0.812 32 H 0.192 0.808 33 H 0.178 0.822 34 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -3.965 -24.696 0.112 25.013 hybrid contribution -1.965 1.650 0.847 2.702 sum -5.931 -23.046 0.959 23.816 Atomic orbital electron populations 1.22048 0.76060 1.04946 1.02915 1.44986 1.08304 1.02593 1.73925 1.20078 0.87108 0.84921 0.74123 1.90660 1.15571 1.87358 1.50177 1.23304 1.02758 0.94745 1.06084 1.85524 1.12567 0.97089 1.97015 1.23217 0.94547 0.92576 1.59052 0.90029 1.26159 0.97697 1.01639 0.93571 1.70197 1.14145 1.22489 1.47956 0.84865 0.78050 0.76557 0.78211 1.18071 1.19882 1.19564 1.17839 0.94799 0.85988 0.92782 1.21581 1.00052 0.97221 0.96575 1.21780 0.93033 0.92741 1.00699 1.21684 0.99667 1.01737 0.90810 1.21699 0.92851 0.91590 1.01180 1.19606 1.07385 0.99420 0.89333 1.21028 0.75375 0.81935 0.85285 1.90918 1.39605 1.23556 1.88482 1.84479 1.75429 1.54832 1.17011 0.92359 0.89554 0.88157 0.86956 0.88375 0.91910 0.84334 0.81193 0.80778 0.82232 0.70834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.98 9.88 127.77 1.26 3.25 16 2 N -0.57 -18.70 1.52 -653.82 -0.99 -19.69 16 3 C 0.55 23.81 6.74 87.66 0.59 24.40 16 4 O -0.56 -29.06 15.83 -3.02 -0.05 -29.11 16 5 C -0.12 -5.33 4.71 71.24 0.34 -4.99 16 6 S -0.15 -8.83 20.57 -56.49 -1.16 -9.99 16 7 C -0.55 -32.56 9.50 67.96 0.65 -31.92 16 8 H 0.08 4.55 7.80 -2.91 -0.02 4.53 16 9 C 0.01 0.82 5.49 84.86 0.47 1.29 16 10 N -0.91 -57.39 13.22 21.65 0.29 -57.11 16 11 Si 1.00 44.78 29.55 68.60 2.03 46.80 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 15 C 0.18 5.12 4.44 38.62 0.17 5.29 16 16 C -0.14 -3.02 9.96 22.37 0.22 -2.79 16 17 C -0.06 -0.94 10.03 22.30 0.22 -0.71 16 18 C -0.12 -1.58 10.02 22.24 0.22 -1.36 16 19 C -0.05 -1.00 9.61 22.52 0.22 -0.78 16 20 C -0.15 -4.17 5.89 -20.00 -0.12 -4.28 16 21 C 0.52 15.22 8.26 70.23 0.58 15.80 16 22 O -0.53 -19.64 13.90 19.82 0.28 -19.36 16 23 O -0.50 -10.35 12.68 -56.67 -0.72 -11.07 16 24 H 0.06 1.51 7.18 -2.39 -0.02 1.49 16 25 H 0.09 1.98 6.44 -2.39 -0.02 1.97 16 26 H 0.10 1.76 8.05 -2.38 -0.02 1.74 16 27 H 0.11 4.47 7.40 -2.40 -0.02 4.45 16 28 H 0.10 4.31 8.11 -2.39 -0.02 4.30 16 29 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 31 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.16 2.18 7.61 -2.91 -0.02 2.16 16 34 H 0.43 5.43 9.11 -74.05 -0.67 4.76 16 Total: -1.00 -88.08 317.31 4.96 -83.12 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.47 Total: 13.22 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 4.82 Total: 3.18 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -0.71 Total: -76.80 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -0.49 Total: -59.54 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -88.08 4.96 -83.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037435854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.630 kcal (2) G-P(sol) polarization free energy of solvation -88.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds