Wall clock time and date at job start Tue Mar 31 2020 06:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99897 * 2 1 4 4 C 1.50701 * 109.47164 * 270.00106 * 3 2 1 5 5 O 1.20823 * 120.00228 * 0.02562 * 4 3 2 6 6 O 1.34229 * 120.00117 * 180.02562 * 4 3 2 7 7 C 1.34775 * 119.99920 * 180.02562 * 2 1 3 8 8 O 1.21603 * 119.99877 * 174.66495 * 7 2 1 9 9 C 1.47436 * 120.00018 * 354.65744 * 7 2 1 10 10 C 1.39677 * 120.21538 * 309.09052 * 9 7 2 11 11 C 1.37800 * 119.93714 * 179.97438 * 10 9 7 12 12 C 1.38656 * 120.38372 * 0.02562 * 11 10 9 13 13 C 1.37908 * 120.43752 * 0.02562 * 12 11 10 14 14 C 1.39113 * 120.04873 * 359.97438 * 13 12 11 15 15 S 1.76207 * 120.18847 * 180.02562 * 14 13 12 16 16 C 1.76205 * 99.99930 * 351.74181 * 15 14 13 17 17 H 1.08001 * 119.99900 * 5.06203 * 16 15 14 18 18 C 1.38804 * 120.00114 * 185.06531 * 16 15 14 19 19 N 1.31562 * 119.99669 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47082 * 89.99950 * 20 18 16 22 22 H 1.48504 * 109.46902 * 210.00018 * 20 18 16 23 23 H 1.48502 * 109.47060 * 329.99805 * 20 18 16 24 24 H 1.09004 * 109.46728 * 274.36003 * 1 2 3 25 25 H 1.08996 * 109.47182 * 34.36121 * 1 2 3 26 26 H 1.08994 * 109.47204 * 154.36461 * 1 2 3 27 27 H 1.09000 * 109.47116 * 30.00060 * 3 2 1 28 28 H 1.09005 * 109.47083 * 150.00231 * 3 2 1 29 29 H 0.96695 * 117.00114 * 180.02562 * 6 4 3 30 30 H 1.08001 * 120.03148 * 0.25859 * 10 9 7 31 31 H 1.08004 * 119.81196 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.78136 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.97469 * 179.97438 * 13 12 11 34 34 H 0.96993 * 119.99343 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 8 2.0557 1.0241 -2.3392 6 8 3.1089 2.8464 -1.6661 7 6 2.1389 -1.1672 -0.0005 8 8 3.3510 -1.1694 -0.0984 9 6 1.4065 -2.4413 0.1178 10 6 0.4752 -2.6242 1.1426 11 6 -0.2065 -3.8172 1.2475 12 6 0.0266 -4.8401 0.3409 13 6 0.9434 -4.6768 -0.6763 14 6 1.6417 -3.4799 -0.7991 15 16 2.8134 -3.2670 -2.0978 16 6 2.8637 -4.9084 -2.7367 17 1 2.1935 -5.6603 -2.3470 18 6 3.7647 -5.2351 -3.7407 19 7 4.5808 -4.3190 -4.2157 20 14 3.8175 -6.9749 -4.4185 21 1 2.8803 -7.0882 -5.5648 22 1 5.1961 -7.2872 -4.8736 23 1 3.4180 -7.9324 -3.3560 24 1 -0.3633 0.0781 1.0247 25 1 -0.3633 0.8483 -0.5800 26 1 -0.3633 -0.9264 -0.4446 27 1 1.6084 2.0283 0.5138 28 1 3.1500 1.1384 0.5138 29 1 3.2456 3.0841 -2.5934 30 1 0.2862 -1.8297 1.8493 31 1 -0.9259 -3.9566 2.0409 32 1 -0.5129 -5.7713 0.4325 33 1 1.1193 -5.4787 -1.3780 34 1 5.2106 -4.5474 -4.9171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037438143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:45 Heat of formation + Delta-G solvation = -85.987236 kcal Electronic energy + Delta-G solvation = -21239.928209 eV Core-core repulsion = 17843.674192 eV Total energy + Delta-G solvation = -3396.254017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42513 -39.36162 -37.55652 -36.03562 -35.14206 -32.76456 -31.09171 -30.36617 -28.80157 -26.36847 -25.84225 -23.31570 -22.02848 -21.57013 -19.42910 -18.03957 -17.97030 -17.02946 -16.74720 -16.17811 -15.86791 -15.53592 -15.10847 -14.77103 -14.38320 -13.90827 -13.54643 -13.02311 -12.96658 -12.88856 -12.69601 -12.46973 -12.25013 -11.91287 -11.66819 -11.35452 -11.19702 -11.19048 -11.00691 -10.54495 -10.33075 -9.80329 -9.62384 -9.51941 -8.76424 -8.69857 -8.44500 -8.31829 -6.54273 -6.47621 -4.18427 1.61977 1.99334 2.35137 2.66185 3.08490 3.13141 3.19722 3.25831 3.38378 3.46173 4.02958 4.33779 4.76975 4.94382 5.08896 5.12223 5.18079 5.30135 5.34086 5.41193 5.57240 5.59430 5.84068 5.87517 6.11391 6.33397 6.46302 6.58817 6.60555 6.85873 6.97253 7.11153 7.42340 7.50832 7.57210 8.00717 8.15163 8.51652 8.98499 10.58027 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.005962 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.179174 B = 4695.006648 C = 6271.505981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.607 5.607 3 C 0.130 3.870 4 C 0.452 3.548 5 O -0.490 6.490 6 O -0.523 6.523 7 C 0.575 3.425 8 O -0.508 6.508 9 C -0.163 4.163 10 C -0.064 4.064 11 C -0.181 4.181 12 C -0.078 4.078 13 C -0.152 4.152 14 C -0.047 4.047 15 S 0.111 5.889 16 C -0.569 4.569 17 H 0.095 0.905 18 C 0.080 3.920 19 N -0.858 5.858 20 Si 0.925 3.075 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.267 1.267 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.408 0.592 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.139 0.861 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 9.886 9.282 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.343 5.343 3 C 0.005 3.995 4 C 0.291 3.709 5 O -0.375 6.375 6 O -0.335 6.335 7 C 0.364 3.636 8 O -0.382 6.382 9 C -0.178 4.178 10 C -0.084 4.084 11 C -0.206 4.206 12 C -0.100 4.100 13 C -0.178 4.178 14 C -0.166 4.166 15 S 0.373 5.627 16 C -0.716 4.716 17 H 0.112 0.888 18 C -0.131 4.131 19 N -0.491 5.491 20 Si 0.750 3.250 21 H -0.199 1.199 22 H -0.204 1.204 23 H -0.191 1.191 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.267 0.733 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.156 0.844 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.579 10.590 8.555 15.582 hybrid contribution -0.629 -1.927 -0.753 2.163 sum -8.208 8.663 7.803 14.259 Atomic orbital electron populations 1.21869 0.78668 1.04067 1.01305 1.47525 1.07232 1.04221 1.75284 1.20738 1.01250 0.87310 0.90215 1.24280 0.74630 0.78076 0.93914 1.90811 1.47364 1.52857 1.46495 1.84487 1.71321 1.41384 1.36344 1.18466 0.87126 0.83270 0.74704 1.90819 1.13700 1.86623 1.47030 1.18987 1.03813 0.94133 1.00826 1.20885 0.94006 0.97332 0.96210 1.20644 1.03744 0.94536 1.01677 1.21082 0.96660 0.97980 0.94246 1.21406 0.98071 0.97935 1.00380 1.22892 0.99849 0.94667 0.99206 1.84158 1.40699 1.14119 1.23680 1.23574 1.25530 0.96982 1.25524 0.88789 1.25133 0.93692 0.99102 0.95207 1.69990 1.19468 1.33840 1.25784 0.86058 0.77929 0.81755 0.79290 1.19854 1.20429 1.19140 0.92377 0.91737 0.89736 0.86402 0.85775 0.73290 0.86678 0.86904 0.86923 0.84366 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 9.17 59.85 0.55 1.52 16 2 N -0.61 -9.20 2.36 -184.23 -0.44 -9.63 16 3 C 0.13 1.60 5.98 -5.20 -0.03 1.57 16 4 C 0.45 6.62 8.40 36.01 0.30 6.92 16 5 O -0.49 -9.56 17.19 -18.75 -0.32 -9.88 16 6 O -0.52 -5.87 13.42 -39.26 -0.53 -6.39 16 7 C 0.57 11.48 6.60 -12.52 -0.08 11.40 16 8 O -0.51 -12.05 15.47 5.27 0.08 -11.97 16 9 C -0.16 -3.27 4.61 -104.75 -0.48 -3.75 16 10 C -0.06 -1.01 8.01 -39.20 -0.31 -1.33 16 11 C -0.18 -2.73 10.02 -39.59 -0.40 -3.13 16 12 C -0.08 -1.32 10.03 -39.55 -0.40 -1.71 16 13 C -0.15 -3.19 9.25 -39.38 -0.36 -3.55 16 14 C -0.05 -1.10 6.13 -38.39 -0.24 -1.33 16 15 S 0.11 3.08 19.78 -107.50 -2.13 0.96 16 16 C -0.57 -15.98 9.08 30.94 0.28 -15.70 16 17 H 0.09 2.48 4.86 -52.49 -0.26 2.22 16 18 C 0.08 2.22 5.49 -17.46 -0.10 2.13 16 19 N -0.86 -25.31 13.22 55.49 0.73 -24.58 16 20 Si 0.92 20.96 29.55 -169.99 -5.02 15.93 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 24 H 0.06 0.49 7.61 -51.93 -0.40 0.10 16 25 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.08 1.14 6.33 -51.93 -0.33 0.81 16 27 H 0.12 0.88 8.07 -51.93 -0.42 0.46 16 28 H 0.12 1.54 7.50 -51.93 -0.39 1.15 16 29 H 0.41 3.15 9.10 45.56 0.41 3.57 16 30 H 0.12 1.43 7.14 -52.49 -0.37 1.06 16 31 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.14 3.01 4.99 -52.49 -0.26 2.75 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 313.21 15.07 4.72 4.72 Total: -1.00 -36.63 313.21 -6.58 -43.21 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -2.41 Total: 4.60 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.27 Total: -6.97 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.30 Total: -34.21 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.77 Total: -28.24 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.13 Total: 0.96 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.63 -6.58 -43.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037438143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.775 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds