Wall clock time and date at job start Tue Mar 31 2020 06:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99897 * 2 1 4 4 C 1.50701 * 109.47164 * 270.00106 * 3 2 1 5 5 O 1.20823 * 120.00228 * 0.02562 * 4 3 2 6 6 O 1.34229 * 120.00117 * 180.02562 * 4 3 2 7 7 C 1.34775 * 119.99920 * 180.02562 * 2 1 3 8 8 O 1.21603 * 119.99877 * 174.66495 * 7 2 1 9 9 C 1.47436 * 120.00018 * 354.65744 * 7 2 1 10 10 C 1.39677 * 120.21538 * 309.09052 * 9 7 2 11 11 C 1.37800 * 119.93714 * 179.97438 * 10 9 7 12 12 C 1.38656 * 120.38372 * 0.02562 * 11 10 9 13 13 C 1.37908 * 120.43752 * 0.02562 * 12 11 10 14 14 C 1.39113 * 120.04873 * 359.97438 * 13 12 11 15 15 S 1.76207 * 120.18847 * 180.02562 * 14 13 12 16 16 C 1.76205 * 99.99930 * 351.74181 * 15 14 13 17 17 H 1.08001 * 119.99900 * 5.06203 * 16 15 14 18 18 C 1.38804 * 120.00114 * 185.06531 * 16 15 14 19 19 N 1.31562 * 119.99669 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47082 * 89.99950 * 20 18 16 22 22 H 1.48504 * 109.46902 * 210.00018 * 20 18 16 23 23 H 1.48502 * 109.47060 * 329.99805 * 20 18 16 24 24 H 1.09004 * 109.46728 * 274.36003 * 1 2 3 25 25 H 1.08996 * 109.47182 * 34.36121 * 1 2 3 26 26 H 1.08994 * 109.47204 * 154.36461 * 1 2 3 27 27 H 1.09000 * 109.47116 * 30.00060 * 3 2 1 28 28 H 1.09005 * 109.47083 * 150.00231 * 3 2 1 29 29 H 0.96695 * 117.00114 * 180.02562 * 6 4 3 30 30 H 1.08001 * 120.03148 * 0.25859 * 10 9 7 31 31 H 1.08004 * 119.81196 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.78136 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.97469 * 179.97438 * 13 12 11 34 34 H 0.96993 * 119.99343 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 8 2.0557 1.0241 -2.3392 6 8 3.1089 2.8464 -1.6661 7 6 2.1389 -1.1672 -0.0005 8 8 3.3510 -1.1694 -0.0984 9 6 1.4065 -2.4413 0.1178 10 6 0.4752 -2.6242 1.1426 11 6 -0.2065 -3.8172 1.2475 12 6 0.0266 -4.8401 0.3409 13 6 0.9434 -4.6768 -0.6763 14 6 1.6417 -3.4799 -0.7991 15 16 2.8134 -3.2670 -2.0978 16 6 2.8637 -4.9084 -2.7367 17 1 2.1935 -5.6603 -2.3470 18 6 3.7647 -5.2351 -3.7407 19 7 4.5808 -4.3190 -4.2157 20 14 3.8175 -6.9749 -4.4185 21 1 2.8803 -7.0882 -5.5648 22 1 5.1961 -7.2872 -4.8736 23 1 3.4180 -7.9324 -3.3560 24 1 -0.3633 0.0781 1.0247 25 1 -0.3633 0.8483 -0.5800 26 1 -0.3633 -0.9264 -0.4446 27 1 1.6084 2.0283 0.5138 28 1 3.1500 1.1384 0.5138 29 1 3.2456 3.0841 -2.5934 30 1 0.2862 -1.8297 1.8493 31 1 -0.9259 -3.9566 2.0409 32 1 -0.5129 -5.7713 0.4325 33 1 1.1193 -5.4787 -1.3780 34 1 5.2106 -4.5474 -4.9171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037438143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:44 Heat of formation + Delta-G solvation = -113.450621 kcal Electronic energy + Delta-G solvation = -21241.119110 eV Core-core repulsion = 17843.674192 eV Total energy + Delta-G solvation = -3397.444918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.68776 -40.69928 -39.00973 -37.20498 -36.45130 -34.82087 -32.49182 -31.85723 -29.92817 -27.93154 -27.48452 -24.68326 -23.49179 -22.80343 -20.89318 -19.71568 -19.17063 -18.45859 -17.91295 -17.68233 -17.21241 -17.08863 -16.70067 -16.19435 -15.80948 -15.31847 -15.01641 -14.63727 -14.47295 -14.17199 -13.77350 -13.70376 -13.48577 -13.32532 -13.05576 -12.94874 -12.88450 -12.62711 -12.53224 -12.07740 -11.80702 -11.49900 -11.42715 -11.16194 -10.52422 -10.30265 -9.89608 -9.74627 -8.52297 -8.50980 -6.30715 0.15152 0.53087 1.19890 1.23146 1.35348 1.42187 1.45034 1.59609 1.96474 2.16499 2.36074 2.81168 2.95088 3.15527 3.60714 4.03545 4.16914 4.18812 4.26293 4.34070 4.37805 4.62224 4.62540 4.74652 4.83271 4.94419 5.10115 5.33971 5.38819 5.49001 5.54475 5.61898 5.67339 6.06449 6.14475 6.21307 6.89761 6.94783 7.10751 8.57062 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.005962 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.179174 B = 4695.006648 C = 6271.505981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.600 5.600 3 C 0.126 3.874 4 C 0.454 3.546 5 O -0.550 6.550 6 O -0.510 6.510 7 C 0.564 3.436 8 O -0.561 6.561 9 C -0.167 4.167 10 C -0.055 4.055 11 C -0.147 4.147 12 C -0.074 4.074 13 C -0.172 4.172 14 C -0.068 4.068 15 S -0.017 6.017 16 C -0.574 4.574 17 H 0.101 0.899 18 C 0.018 3.982 19 N -0.908 5.908 20 Si 1.003 2.997 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.255 1.255 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.180 0.820 28 H 0.122 0.878 29 H 0.424 0.576 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.151 0.849 33 H 0.118 0.882 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.519 9.972 12.782 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.333 5.333 3 C 0.001 3.999 4 C 0.296 3.704 5 O -0.440 6.440 6 O -0.322 6.322 7 C 0.354 3.646 8 O -0.440 6.440 9 C -0.179 4.179 10 C -0.075 4.075 11 C -0.170 4.170 12 C -0.094 4.094 13 C -0.197 4.197 14 C -0.185 4.185 15 S 0.239 5.761 16 C -0.721 4.721 17 H 0.119 0.881 18 C -0.188 4.188 19 N -0.543 5.543 20 Si 0.823 3.177 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.179 1.179 24 H 0.124 0.876 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.197 0.803 28 H 0.140 0.860 29 H 0.285 0.715 30 H 0.181 0.819 31 H 0.187 0.813 32 H 0.169 0.831 33 H 0.136 0.864 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.093 10.738 12.147 19.645 hybrid contribution 0.179 -1.760 -1.534 2.342 sum -10.915 8.978 10.612 17.673 Atomic orbital electron populations 1.22178 0.76215 1.03756 1.04400 1.47555 1.08786 1.03783 1.73166 1.21196 1.02280 0.87330 0.89053 1.24813 0.73393 0.77831 0.94361 1.90811 1.50123 1.54683 1.48395 1.84450 1.70137 1.39812 1.37834 1.18661 0.86646 0.84770 0.74510 1.90789 1.15999 1.87532 1.49652 1.19381 1.04108 0.93545 1.00900 1.21430 0.91920 0.99186 0.94949 1.21356 1.02181 0.92570 1.00879 1.21529 0.94999 1.00256 0.92608 1.21429 0.99625 0.96757 1.01872 1.22736 0.99763 0.97012 0.99032 1.84313 1.46429 1.16172 1.29167 1.23814 1.25826 0.96695 1.25727 0.88128 1.26284 0.93108 1.03908 0.95453 1.70162 1.20842 1.36346 1.26938 0.84900 0.78226 0.75806 0.78791 1.18769 1.19817 1.17873 0.87565 0.90030 0.91979 0.80298 0.85970 0.71514 0.81922 0.81263 0.83107 0.86415 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 9.17 127.77 1.17 2.66 16 2 N -0.60 -17.18 2.36 -855.04 -2.02 -19.20 16 3 C 0.13 2.84 5.98 85.63 0.51 3.35 16 4 C 0.45 13.25 8.40 71.24 0.60 13.85 16 5 O -0.55 -22.47 17.19 21.97 0.38 -22.09 16 6 O -0.51 -11.00 13.42 -51.41 -0.69 -11.69 16 7 C 0.56 22.81 6.60 86.67 0.57 23.38 16 8 O -0.56 -28.18 15.47 -4.04 -0.06 -28.25 16 9 C -0.17 -6.59 4.61 -19.95 -0.09 -6.68 16 10 C -0.06 -1.48 8.01 22.51 0.18 -1.30 16 11 C -0.15 -3.50 10.02 22.27 0.22 -3.28 16 12 C -0.07 -2.19 10.03 22.29 0.22 -1.96 16 13 C -0.17 -7.21 9.25 22.40 0.21 -7.01 16 14 C -0.07 -3.30 6.13 23.04 0.14 -3.16 16 15 S -0.02 -1.02 19.78 -56.49 -1.12 -2.14 16 16 C -0.57 -34.48 9.08 67.96 0.62 -33.86 16 17 H 0.10 5.64 4.86 -2.91 -0.01 5.62 16 18 C 0.02 1.04 5.49 84.87 0.47 1.51 16 19 N -0.91 -57.46 13.22 21.65 0.29 -57.17 16 20 Si 1.00 44.84 29.55 68.60 2.03 46.87 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 24 H 0.11 1.10 7.61 -2.39 -0.02 1.09 16 25 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 26 H 0.06 1.52 6.33 -2.39 -0.02 1.51 16 27 H 0.18 1.81 8.07 -2.39 -0.02 1.79 16 28 H 0.12 2.91 7.50 -2.38 -0.02 2.89 16 29 H 0.42 6.41 9.10 -74.06 -0.67 5.74 16 30 H 0.16 2.88 7.14 -2.91 -0.02 2.86 16 31 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.12 5.35 4.99 -2.91 -0.01 5.33 16 34 H 0.28 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -92.72 313.21 4.11 -88.61 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.49 Total: 17.56 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 4.82 Total: -12.50 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -1.73 Total: -76.37 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: -0.38 Total: -62.03 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -1.12 Total: -2.14 kcal Total: -92.72 4.11 -88.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037438143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.845 kcal (2) G-P(sol) polarization free energy of solvation -92.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds